Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01006131001 Vitis vinifera HOM05D027982 ORTHO05D026067 5.4e-31 137.1 74 100.0
GSVIVG01006509001 Vitis vinifera HOM05D027982 ORTHO05D026067 5.4e-31 137.1 74 100.0
GSVIVG01023964001 Vitis vinifera HOM05D001734 ORTHO05D006943 2.8e-19 98.2 59 88.1
MD05G1126600 Malus domestica HOM05D001734 ORTHO05D006943 1.2e-17 92.8 59 83.1
Hund00010 Selenicereus undatus HOM05D001734 ORTHO05D006943 1.5e-17 92.4 59 81.4
CSS0001027 Camellia sinensis var. sinensis HOM05D001734 ORTHO05D006943 2.0e-17 92.0 59 81.4
CSS0020547 Camellia sinensis var. sinensis HOM05D001734 ORTHO05D006943 2.0e-17 92.0 59 81.4
Thecc.02G053500 Theobroma cacao HOM05D001734 ORTHO05D006943 2.6e-17 91.7 71 73.2
Hma1.2p1_0032F.1_g019090 Hydrangea macrophylla HOM05D001734 ORTHO05D006943 4.5e-17 90.9 59 79.7
MD10G1129700 Malus domestica HOM05D001734 ORTHO05D006943 4.5e-17 90.9 58 81.0
Prupe.8G170300 Prunus persica HOM05D001734 ORTHO05D006943 7.6e-17 90.1 59 81.4
QL11p052553 Quercus lobata HOM05D001734 ORTHO05D006943 7.6e-17 90.1 59 81.4
TWI79G0733 Tripterygium wilfordii HOM05D001734 ORTHO05D006943 7.6e-17 90.1 59 79.7
vmacro02297 Vaccinium macrocarpon HOM05D001734 ORTHO05D006943 7.6e-17 90.1 59 79.7
Cfa005298 Carpinus fangiana HOM05D001734 ORTHO05D006943 9.9e-17 89.7 59 81.4
Haze_02089 Corylus avellana HOM05D001734 ORTHO05D006943 9.9e-17 89.7 59 81.4
Duzib052G0295 Durio zibethinus HOM05D001734 ORTHO05D006943 9.9e-17 89.7 59 79.7
RcHm_v2.0_Chr6g0279121 Rosa chinensis HOM05D001734 ORTHO05D006943 9.9e-17 89.7 59 79.7
CiPaw.06G119600 Carya illinoinensis HOM05D001734 ORTHO05D006943 2.9e-16 88.2 59 78.0
ClCG02G003850 Citrullus lanatus HOM05D001734 ORTHO05D006943 2.9e-16 88.2 59 78.0
MELO3C013324.2 Cucumis melo HOM05D001734 ORTHO05D006943 2.9e-16 88.2 59 78.0
CsaV3_7G001280 Cucumis sativus L. HOM05D001734 ORTHO05D006943 2.9e-16 88.2 59 78.0
Dinv14134 Davidia involucrata HOM05D001734 ORTHO05D006943 2.9e-16 88.2 59 78.0
Cc09_g10400 Coffea canephora HOM05D001734 ORTHO05D006943 3.8e-16 87.8 59 79.7
COL.COLO4_18014 Corchorus olitorius HOM05D001734 ORTHO05D006943 3.8e-16 87.8 59 78.0
DCAR_022421 Daucus carota HOM05D001734 ORTHO05D006943 3.8e-16 87.8 59 76.3
Rhsim11G0194400 Rhododendron simsii HOM05D001734 ORTHO05D006943 3.8e-16 87.8 59 78.0
Gohir.A12G035900 Gossypium hirsutum HOM05D001734 ORTHO05D006943 4.9e-16 87.4 59 76.3
Gohir.D12G036650 Gossypium hirsutum HOM05D001734 ORTHO05D006943 4.9e-16 87.4 59 76.3
Gorai.008G037900 Gossypium raimondii HOM05D001734 ORTHO05D006943 4.9e-16 87.4 59 76.3
Potri.004G179000 Populus trichocarpa HOM05D001734 ORTHO05D006943 4.9e-16 87.4 59 76.3
Sabra04G0120500 Salix brachista HOM05D001734 ORTHO05D006943 4.9e-16 87.4 59 76.3
Sed0017558 Sechium edule HOM05D001734 ORTHO05D006943 6.4e-16 87.0 59 76.3
Actinidia18030 Actinidia chinensis HOM05D001734 ORTHO05D006943 8.4e-16 86.7 59 76.3
ECA234G4688 Erigeron canadensis HOM05D001734 ORTHO05D006943 8.4e-16 86.7 58 79.3
Lj5A175T98 Lonicera japonica HOM05D001734 ORTHO05D006943 8.4e-16 86.7 59 76.3
GSVIVG01020508001 Vitis vinifera HOM05D027982 ORTHO05D026067 8.4e-16 86.7 49 100.0
HanXRQChr05g0141851 Helianthus annuus HOM05D001734 ORTHO05D006943 1.1e-15 86.3 58 79.3
TAR628G1453 Trochodendron aralioides HOM05D001734 ORTHO05D006943 1.1e-15 86.3 59 76.3
Oeu028956.2 Olea europaea HOM05D001734 ORTHO05D006943 1.4e-15 85.9 59 76.3
PGR142G2610 Punica granatum HOM05D001734 ORTHO05D006943 1.4e-15 85.9 59 76.3
CAN.G588.109 Capsicum annuum HOM05D001734 ORTHO05D006943 1.9e-15 85.5 59 74.6
Migut.B00045 Erythranthe guttata HOM05D001734 ORTHO05D006943 1.9e-15 85.5 59 78.0
PSO170G1896 Papaver somniferum HOM05D001734 ORTHO05D006943 1.9e-15 85.5 59 74.6
PSO210G4774 Papaver somniferum HOM05D001734 ORTHO05D006943 1.9e-15 85.5 59 74.6
Sc18g0006200 Simmondsia chinensis HOM05D001734 ORTHO05D006943 1.9e-15 85.5 59 74.6
Manes.04G069900 Manihot esculenta HOM05D001734 ORTHO05D006943 2.4e-15 85.1 59 72.9
Eucgr.I01462 Eucalyptus grandis HOM05D001734 ORTHO05D006943 3.2e-15 84.7 59 74.6
FAN20G0548 Fragaria x ananassa HOM05D001734 ORTHO05D006943 3.2e-15 84.7 59 76.3
FAN27G0836 Fragaria x ananassa HOM05D001734 ORTHO05D006943 3.2e-15 84.7 59 76.3
Lsat_1_v5_gn_3_6601 Lactuca sativa HOM05D001734 ORTHO05D006943 3.2e-15 84.7 58 77.6
SGA_v2.0_scaffold32G13315 Striga asiatica HOM05D001734 ORTHO05D006943 3.2e-15 84.7 59 76.3
SGA_v2.0_scaffold6G03244 Striga asiatica HOM05D001734 ORTHO05D006943 3.2e-15 84.7 59 76.3
AL7G48900 Arabidopsis lyrata HOM05D001734 ORTHO05D006943 4.2e-15 84.3 59 74.6
arahy.Tifrunner.gnm1.ann1.M4HWYD Arachis hypogaea HOM05D001734 ORTHO05D006943 4.2e-15 84.3 59 72.9
Ciclev10027660m.g Citrus clementina HOM05D001734 ORTHO05D006943 4.2e-15 84.3 59 72.9
Lj5g0001935 Lotus japonicus HOM05D001734 ORTHO05D006943 4.2e-15 84.3 59 72.9
Solyc01g111870.3 Solanum lycopersicum HOM05D001734 ORTHO05D006943 4.2e-15 84.3 59 72.9
Sopen01g053910 Solanum pennellii HOM05D001734 ORTHO05D006943 4.2e-15 84.3 59 72.9
Peaxi162Scf00362g00442 Petunia axillaris HOM05D001734 ORTHO05D006943 5.4e-15 84.0 59 71.2
AUR62010002 Chenopodium quinoa HOM05D001734 ORTHO05D006943 7.1e-15 83.6 59 74.6
AUR62012990 Chenopodium quinoa HOM05D001734 ORTHO05D006943 7.1e-15 83.6 59 74.6
FvH4_2g15770 Fragaria vesca HOM05D001734 ORTHO05D006943 7.1e-15 83.6 59 74.6
FAN15G3013 Fragaria x ananassa HOM05D001734 ORTHO05D006943 7.1e-15 83.6 59 74.6
FAN24G0945 Fragaria x ananassa HOM05D001734 ORTHO05D006943 7.1e-15 83.6 59 74.6
Nn6g31886 Nelumbo nucifera HOM05D001734 ORTHO05D006943 7.1e-15 83.6 59 71.2
GSVIVG01026287001 Vitis vinifera HOM05D027982 ORTHO05D026067 7.1e-15 83.6 49 95.9
Lalb_Chr06g0163781 Lupinus albus HOM05D001734 ORTHO05D006943 1.2e-14 82.8 59 71.2
unitig_21.g20845 Utricularia gibba HOM05D001734 ORTHO05D006943 1.6e-14 82.4 59 72.9
CARHR115960 Cardamine hirsuta HOM05D001734 ORTHO05D006943 2.1e-14 82.0 59 74.6
Aqoxy5G01087 Aquilegia oxysepala HOM05D001734 ORTHO05D006943 2.7e-14 81.6 59 71.2
BcaB06g27763 Brassica carinata HOM05D001734 ORTHO05D006943 2.7e-14 81.6 59 72.9
A04p15830 Brassica napus HOM05D001734 ORTHO05D006943 2.7e-14 81.6 59 72.9
C04p50230 Brassica napus HOM05D001734 ORTHO05D006943 2.7e-14 81.6 59 72.9
BolC4t26623H Brassica oleracea HOM05D001734 ORTHO05D006943 2.7e-14 81.6 59 72.9
BraA04t17214Z Brassica rapa HOM05D000482 ORTHO05D006943 2.7e-14 81.6 59 72.9
Thhalv10027615m.g Eutrema salsugineum HOM05D001734 ORTHO05D006943 2.7e-14 81.6 59 72.9
Sp4g00080 Schrenkiella parvula HOM05D001734 ORTHO05D006943 6.0e-14 80.5 59 72.9
Ah.01g023340 Amaranthus hybridus HOM05D001734 ORTHO05D006943 7.9e-14 80.1 59 72.9
AT5G40820 Arabidopsis thaliana HOM05D001734 ORTHO05D006943 7.9e-14 80.1 59 72.9
Carub.0008s0072 Capsella rubella HOM05D001734 ORTHO05D006943 1.0e-13 79.7 59 71.2
Glyma.10G284200 Glycine max HOM05D001734 ORTHO05D006943 1.3e-13 79.3 59 67.8
EL10Ac9g21328 Beta vulgaris HOM05D001734 ORTHO05D006943 1.8e-13 79.0 59 69.5
Atru.chr5.3458 Acer truncatum HOM05D001734 ORTHO05D006943 3.9e-13 77.8 59 71.2
Psat6g232760 Pisum sativum HOM05D001734 ORTHO05D006943 3.9e-13 77.8 59 66.1
Ca_03288_v3 Cicer arietinum L. HOM05D001734 ORTHO05D006943 5.1e-13 77.4 59 66.1
CANSAT25G2086 Cannabis sativa HOM05D001734 ORTHO05D006943 1.1e-12 76.3 59 69.5
Phvul.007G017000 Phaseolus vulgaris HOM05D001734 ORTHO05D006943 1.9e-12 75.5 59 64.4
TPR.G2496 Trifolium pratense HOM05D001734 ORTHO05D006943 3.3e-12 74.7 59 64.4
VMungo0720G2261 Vigna mungo HOM05D001734 ORTHO05D006943 3.3e-12 74.7 59 64.4
Aa31LG7G14750 Aethionema arabicum HOM05D001734 ORTHO05D006943 2.8e-11 71.6 59 62.7
Zm00001eb228310 Zea mays HOM05D001734 ORTHO05D006943 3.7e-11 71.2 59 69.5
MBI18_g09841_MAGBIO Magnolia biondii HOM05D001734 ORTHO05D006943 6.2e-11 70.5 59 67.8
Medtr1g113830 Medicago truncatula HOM05D001734 ORTHO05D006943 6.2e-11 70.5 59 57.6
Aa31LG7G15750 Aethionema arabicum HOM05D001734 ORTHO05D006943 4.0e-10 67.8 59 59.3
ATR0661G423 Amborella trichopoda HOM05D001734 ORTHO05D006943 1.5e-09 65.9 59 57.6
CDE09G0008 Ceratophyllum demersum HOM05D001734 ORTHO05D006943 5.8e-09 63.9 59 55.9
HPP92_022388 Vanilla planifolia HOM05D001734 ORTHO05D006943 2.9e-08 61.6 59 52.5
Psat2g049960 Pisum sativum HOM05D001734 ORTHO05D026067 5.5e-07 57.4 59 50.8


User provided reference genes

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