Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01000075001 Vitis vinifera HOM05D000324 ORTHO05D026222 7.7e-17 89.4 44 100.0
Actinidia40172 Actinidia chinensis HOM05D000324 ORTHO05D003243 1.2e-12 75.5 42 83.3
GSVIVG01017932001 Vitis vinifera HOM05D000324 ORTHO05D003243 1.2e-12 75.5 44 81.8
COL.COLO4_13462 Corchorus olitorius HOM05D000324 ORTHO05D003243 2.6e-12 74.3 41 85.4
Duzib106G0836 Durio zibethinus HOM05D000324 ORTHO05D003243 5.7e-12 73.2 42 78.6
SGA_v2.0_scaffold81G26067 Striga asiatica HOM05D000324 ORTHO05D003243 7.5e-12 72.8 44 77.3
Thecc.05G302800 Theobroma cacao HOM05D000324 ORTHO05D003243 7.5e-12 72.8 42 81.0
Duzib128G1057 Durio zibethinus HOM05D000324 ORTHO05D003243 9.8e-12 72.4 43 81.4
Migut.N02009 Erythranthe guttata HOM05D000324 ORTHO05D003243 9.8e-12 72.4 44 77.3
MSTRG.27996 Avicennia marina HOM05D000324 ORTHO05D003243 1.3e-11 72.0 42 81.0
Thecc.04G227800 Theobroma cacao HOM05D000324 ORTHO05D003243 3.7e-11 70.5 41 78.0
MSTRG.5102 Avicennia marina HOM05D000324 ORTHO05D003243 6.3e-11 69.7 44 75.0
Dinv23939 Davidia involucrata HOM05D000324 ORTHO05D003243 8.3e-11 69.3 41 78.0
Nn1g02248 Nelumbo nucifera HOM05D000324 ORTHO05D003243 8.3e-11 69.3 44 75.0
QL03p007090 Quercus lobata HOM05D000324 ORTHO05D003243 8.3e-11 69.3 42 76.2
CAN.G907.25 Capsicum annuum HOM05D000324 ORTHO05D003243 1.1e-10 68.9 44 70.5
Potri.010G090200 Populus trichocarpa HOM05D000324 ORTHO05D003243 1.1e-10 68.9 44 72.7
Cc03_g03510 Coffea canephora HOM05D000324 ORTHO05D003243 1.8e-10 68.2 42 73.8
CsaV3_3G013480 Cucumis sativus L. HOM05D000324 ORTHO05D003243 1.8e-10 68.2 42 73.8
TWI09G0027 Tripterygium wilfordii HOM05D000324 ORTHO05D003243 1.8e-10 68.2 44 72.7
CANSAT78G2497 Cannabis sativa HOM05D000324 ORTHO05D003243 2.4e-10 67.8 44 70.5
DCAR_024604 Daucus carota HOM05D000324 ORTHO05D003243 2.4e-10 67.8 44 72.7
Gohir.D01G021400 Gossypium hirsutum HOM05D000324 ORTHO05D003243 2.4e-10 67.8 40 77.5
Gorai.002G023900 Gossypium raimondii HOM05D000324 ORTHO05D003243 2.4e-10 67.8 40 80.0
Solyc09g075770.3 Solanum lycopersicum HOM05D000324 ORTHO05D003243 2.4e-10 67.8 44 68.2
Sopen09g030580 Solanum pennellii HOM05D000324 ORTHO05D003243 2.4e-10 67.8 44 68.2
Aa31LG11G9360 Aethionema arabicum HOM05D000324 ORTHO05D003243 4.1e-10 67.0 42 73.8
Dinv38428 Davidia involucrata HOM05D000324 ORTHO05D003243 4.1e-10 67.0 44 70.5
PGR004G1037 Punica granatum HOM05D000324 ORTHO05D003243 4.1e-10 67.0 42 71.4
Atru.chr2.399 Acer truncatum HOM05D000324 ORTHO05D026222 5.4e-10 66.6 40 77.5
Gohir.A09G055700 Gossypium hirsutum HOM05D000324 ORTHO05D003243 5.4e-10 66.6 41 75.6
Lsat_1_v5_gn_5_149121 Lactuca sativa HOM05D000324 ORTHO05D003243 5.4e-10 66.6 44 68.2
Sp2g20760 Schrenkiella parvula HOM05D000324 ORTHO05D003243 5.4e-10 66.6 42 71.4
Aqoxy5G00499 Aquilegia oxysepala HOM05D000324 ORTHO05D003243 7.0e-10 66.2 42 69.0
A06p37420 Brassica napus HOM05D000324 ORTHO05D003243 7.0e-10 66.2 42 71.4
CSS0027888 Camellia sinensis var. sinensis HOM05D000324 ORTHO05D003243 7.0e-10 66.2 42 76.2
Nn4g26266 Nelumbo nucifera HOM05D000324 ORTHO05D003243 7.0e-10 66.2 41 75.6
Potri.013G021300 Populus trichocarpa HOM05D000324 ORTHO05D003243 7.0e-10 66.2 42 71.4
vmacro05016 Vaccinium macrocarpon HOM05D000324 ORTHO05D003243 7.0e-10 66.2 39 76.9
CAN.G1034.44 Capsicum annuum HOM05D000324 ORTHO05D003243 9.1e-10 65.9 44 72.7
Nitab4.5_0000137g0180 Nicotiana tabacum HOM05D000324 ORTHO05D003243 9.1e-10 65.9 44 72.7
Nitab4.5_0005541g0050 Nicotiana tabacum HOM05D000324 ORTHO05D003243 9.1e-10 65.9 44 72.7
TWI53G0123 Tripterygium wilfordii HOM05D000324 ORTHO05D003243 9.1e-10 65.9 44 70.5
TAR636G3478 Trochodendron aralioides HOM05D000324 ORTHO05D003243 9.1e-10 65.9 36 86.1
Solyc01g099100.4 Solanum lycopersicum HOM05D000324 ORTHO05D003243 1.2e-09 65.5 44 72.7
Sopen01g042660 Solanum pennellii HOM05D000324 ORTHO05D003243 1.2e-09 65.5 44 72.7
Atru.chr2.400 Acer truncatum HOM05D000324 ORTHO05D003243 1.6e-09 65.1 40 77.5
Ciclev10000461m.g Citrus clementina HOM05D000324 ORTHO05D003243 1.6e-09 65.1 41 75.6
DCAR_022167 Daucus carota HOM05D000324 ORTHO05D003243 1.6e-09 65.1 41 73.2
Actinidia05702 Actinidia chinensis HOM05D000324 ORTHO05D003243 2.0e-09 64.7 36 83.3
Carub.0006s2499 Capsella rubella HOM05D000324 ORTHO05D003243 2.0e-09 64.7 42 71.4
Gohir.A01G023400 Gossypium hirsutum HOM05D000324 ORTHO05D003243 2.0e-09 64.7 40 72.5
AT5G27600 Arabidopsis thaliana HOM05D000324 ORTHO05D003243 2.7e-09 64.3 42 71.4
BraA06t26665Z Brassica rapa HOM05D000324 ORTHO05D003243 2.7e-09 64.3 42 69.0
CSS0023459 Camellia sinensis var. sinensis HOM05D000324 ORTHO05D003243 2.7e-09 64.3 42 69.0
CSS0039629 Camellia sinensis var. sinensis HOM05D000324 ORTHO05D003243 2.7e-09 64.3 42 69.0
CSS0044823 Camellia sinensis var. sinensis HOM05D000324 ORTHO05D003243 2.7e-09 64.3 42 69.0
CiPaw.08G164500 Carya illinoinensis HOM05D000324 ORTHO05D003243 2.7e-09 64.3 41 73.2
PSO210G0902 Papaver somniferum HOM05D000324 ORTHO05D003243 2.7e-09 64.3 39 74.4
PSO832G1068 Papaver somniferum HOM05D000324 ORTHO05D003243 2.7e-09 64.3 39 74.4
Sabra13G0023700 Salix brachista HOM05D000324 ORTHO05D003243 2.7e-09 64.3 42 71.4
Dinv40290 Davidia involucrata HOM05D000324 ORTHO05D003243 3.5e-09 63.9 41 73.2
PGR031G2602 Punica granatum HOM05D000324 ORTHO05D003243 3.5e-09 63.9 41 73.2
RcHm_v2.0_Chr4g0416751 Rosa chinensis HOM05D000324 ORTHO05D003243 3.5e-09 63.9 42 69.0
SalBow3G1940 Salvia bowleyana HOM05D000324 ORTHO05D003243 3.5e-09 63.9 46 69.6
THA.LOC104818701 Tarenaya hassleriana HOM05D000324 ORTHO05D003243 3.5e-09 63.9 42 69.0
Atru.chr1.84 Acer truncatum HOM05D000324 ORTHO05D003243 4.5e-09 63.5 40 75.0
Atru.chr4.2506 Acer truncatum HOM05D000324 ORTHO05D003243 4.5e-09 63.5 39 74.4
AL6G39440 Arabidopsis lyrata HOM05D000324 ORTHO05D003243 4.5e-09 63.5 42 69.0
BcaNung04543 Brassica carinata HOM05D000324 ORTHO05D003243 4.5e-09 63.5 42 69.0
BcaNung04544 Brassica carinata HOM05D000324 ORTHO05D003243 4.5e-09 63.5 42 69.0
C07p40940 Brassica napus HOM05D000324 ORTHO05D003243 4.5e-09 63.5 42 69.0
BolC7t44624H Brassica oleracea HOM05D000324 ORTHO05D003243 4.5e-09 63.5 42 69.0
Haze_04193 Corylus avellana HOM05D000324 ORTHO05D003243 4.5e-09 63.5 38 76.3
Gohir.D11G311400 Gossypium hirsutum HOM05D000324 ORTHO05D003243 4.5e-09 63.5 42 69.0
Gorai.006G052200 Gossypium raimondii HOM05D000324 ORTHO05D003243 4.5e-09 63.5 41 73.2
Gorai.007G342400 Gossypium raimondii HOM05D000324 ORTHO05D003243 4.5e-09 63.5 42 69.0
Lj5C472G2 Lonicera japonica HOM05D000324 ORTHO05D003243 4.5e-09 63.5 42 73.8
Manes.09G167400 Manihot esculenta HOM05D000324 ORTHO05D003243 4.5e-09 63.5 39 74.4
Peaxi162Scf00037g00424 Petunia axillaris HOM05D000324 ORTHO05D003243 4.5e-09 63.5 41 73.2
Cpa.g.sc48.58 Carica papaya HOM05D000324 ORTHO05D003243 5.9e-09 63.2 40 72.5
FvH4_4g15110 Fragaria vesca HOM05D000324 ORTHO05D003243 5.9e-09 63.2 42 66.7
Solyc09g075790.3 Solanum lycopersicum HOM05D000324 ORTHO05D003243 5.9e-09 63.2 44 61.4
Eucgr.F01499 Eucalyptus grandis HOM05D000324 ORTHO05D003243 7.7e-09 62.8 44 72.7
Oeu020849.1 Olea europaea HOM05D000324 ORTHO05D003243 7.7e-09 62.8 44 72.7
CARHR080470 Cardamine hirsuta HOM05D000324 ORTHO05D003243 1.0e-08 62.4 41 68.3
Cfa006591 Carpinus fangiana HOM05D000324 ORTHO05D003243 1.0e-08 62.4 39 74.4
BcaB04g19223 Brassica carinata HOM05D000324 ORTHO05D003243 1.3e-08 62.0 40 70.0
BcaC01g04317 Brassica carinata HOM05D000324 ORTHO05D003243 1.3e-08 62.0 44 65.9
Ciclev10004460m.g Citrus clementina HOM05D000324 ORTHO05D003243 1.3e-08 62.0 42 66.7
ECA234G3897 Erigeron canadensis HOM05D000324 ORTHO05D003243 1.3e-08 62.0 44 61.4
Lsat_1_v5_gn_9_123461 Lactuca sativa HOM05D000324 ORTHO05D003243 1.3e-08 62.0 44 68.2
Manes.03G180700 Manihot esculenta HOM05D000324 ORTHO05D003243 1.3e-08 62.0 44 70.5
Sopen09g030600 Solanum pennellii HOM05D000324 ORTHO05D003243 1.3e-08 62.0 44 61.4
TAR362G1311 Trochodendron aralioides HOM05D000324 ORTHO05D003243 1.3e-08 62.0 33 84.8
VMungo0720G1612 Vigna mungo HOM05D000324 ORTHO05D003243 1.3e-08 62.0 44 72.7
A03p34450 Brassica napus HOM05D000324 ORTHO05D003243 1.7e-08 61.6 44 65.9
C03p41910 Brassica napus HOM05D000324 ORTHO05D003243 1.7e-08 61.6 44 65.9
BolC3t16474H Brassica oleracea HOM05D000324 ORTHO05D003243 1.7e-08 61.6 44 65.9
BraA03t12621Z Brassica rapa HOM05D000324 ORTHO05D003243 1.7e-08 61.6 44 65.9
Duzib212G0052 Durio zibethinus HOM05D000324 ORTHO05D003243 1.7e-08 61.6 40 70.0
Thhalv10020181m.g Eutrema salsugineum HOM05D000324 ORTHO05D003243 1.7e-08 61.6 44 65.9
Prupe.1G155800 Prunus persica HOM05D000324 ORTHO05D003243 1.7e-08 61.6 42 66.7
Sp3g04900 Schrenkiella parvula HOM05D000324 ORTHO05D003243 1.7e-08 61.6 44 65.9
ATR0626G275 Amborella trichopoda HOM05D000324 ORTHO05D003243 2.2e-08 61.2 40 67.5
HanXRQChr03g0071661 Helianthus annuus HOM05D000324 ORTHO05D003243 2.2e-08 61.2 44 65.9
RcHm_v2.0_Chr3g0454921 Rosa chinensis HOM05D000324 ORTHO05D003243 2.2e-08 61.2 42 66.7
Hund07073 Selenicereus undatus HOM05D000324 ORTHO05D003243 2.2e-08 61.2 42 66.7
Carub.0003s0537 Capsella rubella HOM05D000324 ORTHO05D003243 2.9e-08 60.8 44 65.9
CDE06G2065 Ceratophyllum demersum HOM05D000324 ORTHO05D003243 2.9e-08 60.8 36 77.8
Cc02_g33380 Coffea canephora HOM05D000324 ORTHO05D003243 2.9e-08 60.8 44 63.6
Glyma.20G143900 Glycine max HOM05D000324 ORTHO05D003243 2.9e-08 60.8 42 61.9
Gorai.002G023800 Gossypium raimondii HOM05D000324 ORTHO05D003243 3.8e-08 60.5 38 76.3
SGA_v2.0_scaffold39G15285 Striga asiatica HOM05D000324 ORTHO05D003243 3.8e-08 60.5 44 61.4
FAN05G3782 Fragaria x ananassa HOM05D000324 ORTHO05D003243 5.0e-08 60.1 42 64.3
FAN05G5089 Fragaria x ananassa HOM05D000324 ORTHO05D003243 5.0e-08 60.1 42 64.3
HanXRQChr10g0296521 Helianthus annuus HOM05D000324 ORTHO05D003243 5.0e-08 60.1 44 59.1
Aa31LG5G16440 Aethionema arabicum HOM05D000324 ORTHO05D003243 6.5e-08 59.7 44 63.6
AT3G05970 Arabidopsis thaliana HOM05D000324 ORTHO05D003243 6.5e-08 59.7 44 63.6
MELO3C006545.2 Cucumis melo HOM05D000324 ORTHO05D003243 6.5e-08 59.7 53 58.5
FvH4_6g05910 Fragaria vesca HOM05D000324 ORTHO05D003243 6.5e-08 59.7 42 64.3
FAN11G1977 Fragaria x ananassa HOM05D000324 ORTHO05D003243 6.5e-08 59.7 42 64.3
Gohir.A11G295500 Gossypium hirsutum HOM05D000324 ORTHO05D003243 6.5e-08 59.7 42 66.7
arahy.Tifrunner.gnm1.ann1.8MB6Y9 Arachis hypogaea HOM05D000324 ORTHO05D003243 8.5e-08 59.3 48 68.8
arahy.Tifrunner.gnm1.ann1.QYWJ3M Arachis hypogaea HOM05D000324 ORTHO05D003243 8.5e-08 59.3 48 68.8
Lj3C740T16 Lonicera japonica HOM05D000324 ORTHO05D003243 8.5e-08 59.3 47 63.8
Lj5g0023213 Lotus japonicus HOM05D000324 ORTHO05D003243 8.5e-08 59.3 42 61.9
CiPaw.01G164000 Carya illinoinensis HOM05D000324 ORTHO05D003243 1.1e-07 58.9 42 64.3
Gohir.D09G054600 Gossypium hirsutum HOM05D000324 ORTHO05D003243 1.1e-07 58.9 41 68.3
Gohir.D01G021300 Gossypium hirsutum HOM05D000324 ORTHO05D003243 1.5e-07 58.5 38 73.7
Medtr1g104810 Medicago truncatula HOM05D000324 ORTHO05D003243 1.5e-07 58.5 42 64.3
Phvul.007G054900 Phaseolus vulgaris HOM05D000324 ORTHO05D003243 1.5e-07 58.5 42 61.9
THA.LOC104802761 Tarenaya hassleriana HOM05D000324 ORTHO05D003243 1.5e-07 58.5 44 61.4
AL3G16770 Arabidopsis lyrata HOM05D000324 ORTHO05D003243 1.9e-07 58.2 36 72.2
CiPaw.02G095600 Carya illinoinensis HOM05D000324 ORTHO05D003243 1.9e-07 58.2 42 61.9
MD13G1188800 Malus domestica HOM05D000324 ORTHO05D003243 1.9e-07 58.2 42 61.9
Sc09g0003180 Simmondsia chinensis HOM05D000324 ORTHO05D003243 1.9e-07 58.2 42 64.3
CARHR186130 Cardamine hirsuta HOM05D000324 ORTHO05D003243 2.5e-07 57.8 42 61.9
Cfa015620 Carpinus fangiana HOM05D000324 ORTHO05D003243 2.5e-07 57.8 35 77.1
Glyma.10G249700 Glycine max HOM05D000324 ORTHO05D003243 2.5e-07 57.8 42 59.5
Psat3g152440 Pisum sativum HOM05D002103 ORTHO05D004020 2.5e-07 57.8 36 77.8
Psat6g208680 Pisum sativum HOM05D000324 ORTHO05D003243 2.5e-07 57.8 36 77.8
AagrBONN_evm.TU.Sc2ySwM_228.3597 Anthoceros agrestis HOM05D000324 ORTHO05D003243 3.2e-07 57.4 39 61.5
Lsat_1_v5_gn_5_149101 Lactuca sativa HOM05D000324 ORTHO05D003243 3.2e-07 57.4 41 61.0
MD16G1189300 Malus domestica HOM05D000324 ORTHO05D003243 3.2e-07 57.4 40 62.5
TPR.G5499 Trifolium pratense HOM05D000324 ORTHO05D003243 3.2e-07 57.4 42 64.3
FAN12G0732 Fragaria x ananassa HOM05D000324 ORTHO05D003243 5.5e-07 56.6 48 58.3
FAN22G2197 Fragaria x ananassa HOM05D000324 ORTHO05D003243 5.5e-07 56.6 48 58.3
Lalb_Chr09g0319761 Lupinus albus HOM05D000324 ORTHO05D003243 5.5e-07 56.6 35 77.1
Os11g0147000 Oryza sativa ssp. japonica HOM05D000324 ORTHO05D003243 5.5e-07 56.6 42 57.1
Sed0007483 Sechium edule HOM05D000324 ORTHO05D003243 5.5e-07 56.6 36 72.2
BcaC05g30074 Brassica carinata HOM05D000324 ORTHO05D003243 7.2e-07 56.2 36 69.4
A05p42070 Brassica napus HOM05D000324 ORTHO05D003243 7.2e-07 56.2 36 69.4
C05p61300 Brassica napus HOM05D000324 ORTHO05D003243 7.2e-07 56.2 36 69.4
BolC5t34789H Brassica oleracea HOM05D000324 ORTHO05D003243 7.2e-07 56.2 36 69.4
BraA05t22927Z Brassica rapa HOM05D000324 ORTHO05D003243 7.2e-07 56.2 36 69.4
FvH4_6g05960 Fragaria vesca HOM05D049089 ORTHO05D026222 7.2e-07 56.2 33 75.8
FAN09G1316 Fragaria x ananassa HOM05D000324 ORTHO05D003243 7.2e-07 56.2 35 71.4
FAN14G5350 Fragaria x ananassa HOM05D000324 ORTHO05D003243 7.2e-07 56.2 33 75.8
Psat7g222680 Pisum sativum HOM05D002103 ORTHO05D004020 7.2e-07 56.2 36 75.0
QL06p003245 Quercus lobata HOM05D000324 ORTHO05D003243 9.4e-07 55.8 38 71.1
Cpa.g.sc683.2 Carica papaya HOM05D000324 ORTHO05D003243 1.2e-06 55.5 40 65.0
Rhsim04G0205300 Rhododendron simsii HOM05D000324 ORTHO05D003243 1.2e-06 55.5 41 65.9
Prupe.6G325200 Prunus persica HOM05D000324 ORTHO05D003243 1.6e-06 55.1 42 64.3
RhsimUnG0226400 Rhododendron simsii HOM05D000324 ORTHO05D003243 1.6e-06 55.1 56 55.4
arahy.Tifrunner.gnm1.ann1.CC1Y5W Arachis hypogaea HOM05D000324 ORTHO05D003243 2.1e-06 54.7 36 66.7
arahy.Tifrunner.gnm1.ann1.MD8IXL Arachis hypogaea HOM05D000324 ORTHO05D003243 2.1e-06 54.7 36 66.7
Os12g0143900 Oryza sativa ssp. japonica HOM05D000324 ORTHO05D003243 3.6e-06 53.9 42 54.8
Ca_10921_v3 Cicer arietinum L. HOM05D000324 ORTHO05D003243 6.1e-06 53.1 42 54.8
Lalb_Chr21g0304611 Lupinus albus HOM05D000324 ORTHO05D003243 6.1e-06 53.1 33 72.7
Ah.04g160250 Amaranthus hybridus HOM05D000324 ORTHO05D003243 8.0e-06 52.8 42 59.5


User provided reference genes

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