Gene: AT3G05970

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G05970
  • Transcript Identifier AT3G05970.1
  • Gene Type Coding gene
  • Location Chr3 : 1786510-1791746 : negative

Gene Family Information

  • ID HOM05D000324
  • #Genes/#Species 1429/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G05970.1
  • symbol LACS6
  • Alias ATLACS6
  • uniprot Q8LPS1

Descriptions

  • Description long-chain acyl-CoA synthetase 6
  • Computational description long-chain acyl-CoA synthetase 6 (LACS6); FUNCTIONS IN: long-chain fatty acid-CoA ligase activity; INVOLVED IN: long-chain fatty acid metabolic process; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: long-chain acyl-CoA synthetase 7 (TAIR:AT5G27600.1); Has 54528 Blast hits to 52136 proteins in 3333 species: Archae - 925; Bacteria - 35165; Metazoa - 2570; Fungi - 2253; Plants - 2087; Viruses - 1; Other Eukaryotes - 11527 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006631
IEA
GOA Databasefatty acid metabolic process
GO:0006631
TAS
Gene Ontologyfatty acid metabolic process1
GO:0006629
IEA
GOA Databaselipid metabolic process
GO:0001676
IEA
GOA Databaselong-chain fatty acid metabolic process
GO:0001676
TAS
Gene Ontologylong-chain fatty acid metabolic process
GO:0010193
IEP
Gene Ontologyresponse to ozone2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
IEA
GOA DatabaseATP binding
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016874
IEA
GOA Databaseligase activity
GO:0004467
IEA
GOA Databaselong-chain fatty acid-CoA ligase activity
GO:0004467
IDA
IBA
TAS
Gene Ontologylong-chain fatty acid-CoA ligase activity1 2 3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016020
IEA
GOA Databasemembrane
GO:0016020
IBA
Gene Ontologymembrane3
GO:0009514
IEA
GOA Databaseglyoxysome
GO:0046861
IEA
GOA Databaseglyoxysomal membrane
GO:0005777
IEA
GOA Databaseperoxisome
GO:0005777
IDA
Gene Ontologyperoxisome4
GO:0005783
IBA
Gene Ontologyendoplasmic reticulum3
GO:0005829
HDA
Gene Ontologycytosol5
GO:0009507
ISM
Gene Ontologychloroplast

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR042099 ANL, N-terminal domain
IPR000873 AMP-dependent synthetase/ligase
Mapman id Description
5.7.3.1 Lipid metabolism.lipid degradation.fatty acid degradation.peroxisomal long-chain acyl-CoA synthetase (LACS6/7)