Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g06980 Fragaria vesca HOM05D001900 ORTHO05D046091 2.4e-78 295.4 146 100.0
FAN24G2872 Fragaria x ananassa HOM05D001900 ORTHO05D046091 1.6e-50 203.0 106 95.3
FAN16G0252 Fragaria x ananassa HOM05D006358 ORTHO05D008185 1.1e-30 137.1 103 69.9
FvH4_2g04970 Fragaria vesca HOM05D001900 ORTHO05D003003 5.3e-22 108.2 50 100.0
FAN02G2150 Fragaria x ananassa HOM05D001900 ORTHO05D003003 5.3e-22 108.2 50 100.0
FAN15G0323 Fragaria x ananassa HOM05D001900 ORTHO05D003003 5.3e-22 108.2 50 100.0
FAN20G1512 Fragaria x ananassa HOM05D001900 ORTHO05D003003 5.3e-22 108.2 50 100.0
FAN24G3538 Fragaria x ananassa HOM05D001900 ORTHO05D003003 5.3e-22 108.2 50 100.0
FvH4_7g02410 Fragaria vesca HOM05D001900 ORTHO05D003003 9.1e-22 107.5 50 98.0
FAN15G0949 Fragaria x ananassa HOM05D001900 ORTHO05D003003 3.4e-21 105.5 49 98.0
FAN14G2403 Fragaria x ananassa HOM05D001900 ORTHO05D003003 1.3e-20 103.6 50 96.0
FAN07G0041 Fragaria x ananassa HOM05D001900 ORTHO05D003003 2.2e-20 102.8 53 94.3
RcHm_v2.0_Chr3g0496081 Rosa chinensis HOM05D001900 ORTHO05D003003 2.9e-20 102.4 50 94.0
vmacro07653 Vaccinium macrocarpon HOM05D001900 ORTHO05D003003 2.9e-20 102.4 64 75.0
Prupe.1G194700 Prunus persica HOM05D001900 ORTHO05D003003 5.0e-20 101.7 50 92.0
Haze_20410 Corylus avellana HOM05D001900 ORTHO05D003003 6.5e-20 101.3 50 90.0
MD04G1041000 Malus domestica HOM05D001900 ORTHO05D003003 6.5e-20 101.3 50 90.0
Cfa017715 Carpinus fangiana HOM05D001900 ORTHO05D003003 8.5e-20 100.9 50 90.0
GSVIVG01022436001 Vitis vinifera HOM05D001900 ORTHO05D003003 8.5e-20 100.9 50 86.0
CSS0031386 Camellia sinensis var. sinensis HOM05D001900 ORTHO05D003003 1.1e-19 100.5 50 88.0
Rhsim03G0049600 Rhododendron simsii HOM05D001900 ORTHO05D003003 1.1e-19 100.5 50 88.0
Solyc01g020440.3 Solanum lycopersicum HOM05D001900 ORTHO05D003003 1.4e-19 100.1 50 90.0
MD12G1011300 Malus domestica HOM05D001900 ORTHO05D003003 1.9e-19 99.8 50 90.0
Sopen01g015760 Solanum pennellii HOM05D001900 ORTHO05D003003 1.9e-19 99.8 50 88.0
Ciclev10020854m.g Citrus clementina HOM05D001900 ORTHO05D003003 2.5e-19 99.4 50 84.0
MD04G1041300 Malus domestica HOM05D001900 ORTHO05D003003 2.5e-19 99.4 50 88.0
QL07p018995 Quercus lobata HOM05D001900 ORTHO05D003003 2.5e-19 99.4 50 86.0
CiPaw.09G166800 Carya illinoinensis HOM05D001900 ORTHO05D003003 4.2e-19 98.6 50 86.0
CsaV3_4G031600 Cucumis sativus L. HOM05D001900 ORTHO05D003003 4.2e-19 98.6 50 88.0
Gohir.A13G163700 Gossypium hirsutum HOM05D001900 ORTHO05D003003 4.2e-19 98.6 72 63.9
Gohir.D13G166600 Gossypium hirsutum HOM05D001900 ORTHO05D003003 4.2e-19 98.6 72 63.9
Gorai.013G195900 Gossypium raimondii HOM05D001900 ORTHO05D003003 4.2e-19 98.6 72 63.9
Prupe.7G013300 Prunus persica HOM05D001900 ORTHO05D003003 4.2e-19 98.6 50 88.0
Lj1A1072T25 Lonicera japonica HOM05D001900 ORTHO05D003003 7.2e-19 97.8 50 84.0
Lalb_Chr02g0157371 Lupinus albus HOM05D001900 ORTHO05D003003 7.2e-19 97.8 50 84.0
CAN.G959.51 Capsicum annuum HOM05D001900 ORTHO05D003003 9.4e-19 97.4 50 88.0
Cpa.g.sc161.34 Carica papaya HOM05D001900 ORTHO05D003003 9.4e-19 97.4 50 84.0
MELO3C008864.2 Cucumis melo HOM05D001900 ORTHO05D003003 1.2e-18 97.1 50 86.0
Nitab4.5_0000121g0030 Nicotiana tabacum HOM05D001900 ORTHO05D003003 1.2e-18 97.1 50 88.0
Solyc01g020220.3 Solanum lycopersicum HOM05D001900 ORTHO05D003003 1.2e-18 97.1 50 88.0
Sopen01g010500 Solanum pennellii HOM05D001900 ORTHO05D003003 1.2e-18 97.1 50 88.0
Duzib128G0536 Durio zibethinus HOM05D001900 ORTHO05D003003 1.6e-18 96.7 57 75.4
HanXRQChr07g0196281 Helianthus annuus HOM05D001900 ORTHO05D003003 1.6e-18 96.7 50 86.0
Cc06_g21450 Coffea canephora HOM05D001900 ORTHO05D003003 2.1e-18 96.3 50 84.0
Dinv25044 Davidia involucrata HOM05D001900 ORTHO05D003003 2.7e-18 95.9 50 84.0
Peaxi162Scf00258g00523 Petunia axillaris HOM05D001900 ORTHO05D003003 2.7e-18 95.9 50 86.0
Sopen01g014330 Solanum pennellii HOM05D001900 ORTHO05D003003 2.7e-18 95.9 115 46.1
MSTRG.6253 Avicennia marina HOM05D001900 ORTHO05D003003 3.6e-18 95.5 50 82.0
AUR62038453 Chenopodium quinoa HOM05D001900 ORTHO05D003003 3.6e-18 95.5 50 82.0
AUR62042150 Chenopodium quinoa HOM05D001900 ORTHO05D003003 3.6e-18 95.5 50 82.0
ECA238G2580 Erigeron canadensis HOM05D001900 ORTHO05D003003 3.6e-18 95.5 57 75.4
SalBow6G4052 Salvia bowleyana HOM05D001900 ORTHO05D003003 3.6e-18 95.5 50 84.0
SalBow6G6368 Salvia bowleyana HOM05D001900 ORTHO05D003003 3.6e-18 95.5 50 84.0
Actinidia37818 Actinidia chinensis HOM05D001900 ORTHO05D003003 4.7e-18 95.1 50 84.0
COL.COLO4_28637 Corchorus olitorius HOM05D001900 ORTHO05D003003 4.7e-18 95.1 50 82.0
Migut.J01540 Erythranthe guttata HOM05D001900 ORTHO05D003003 4.7e-18 95.1 50 86.0
Gohir.A11G229200 Gossypium hirsutum HOM05D001900 ORTHO05D003003 4.7e-18 95.1 50 82.0
Gohir.D11G241300 Gossypium hirsutum HOM05D001900 ORTHO05D003003 4.7e-18 95.1 50 82.0
Gorai.007G255400 Gossypium raimondii HOM05D001900 ORTHO05D003003 4.7e-18 95.1 50 82.0
arahy.Tifrunner.gnm1.ann1.EEI187 Arachis hypogaea HOM05D001900 ORTHO05D003003 6.1e-18 94.7 50 82.0
arahy.Tifrunner.gnm1.ann1.FX2G1C Arachis hypogaea HOM05D001900 ORTHO05D003003 6.1e-18 94.7 50 82.0
Nitab4.5_0002915g0020 Nicotiana tabacum HOM05D001900 ORTHO05D003003 6.1e-18 94.7 50 86.0
Sed0019827 Sechium edule HOM05D001900 ORTHO05D003003 6.1e-18 94.7 50 84.0
HPP92_015892 Vanilla planifolia HOM05D001900 ORTHO05D003003 6.1e-18 94.7 50 78.0
Lsat_1_v5_gn_2_103681 Lactuca sativa HOM05D001900 ORTHO05D003003 8.0e-18 94.4 50 84.0
PGR042G3124 Punica granatum HOM05D001900 ORTHO05D003003 8.0e-18 94.4 50 82.0
unitig_21.g20661 Utricularia gibba HOM05D001900 ORTHO05D003003 8.0e-18 94.4 50 84.0
CANSAT54G0333 Cannabis sativa HOM05D001900 ORTHO05D003003 1.0e-17 94.0 50 84.0
Duzib177G0529 Durio zibethinus HOM05D001900 ORTHO05D003003 1.0e-17 94.0 106 45.3
MBI01_g21128_MAGBIO Magnolia biondii HOM05D001900 ORTHO05D003003 1.0e-17 94.0 50 80.0
Potri.019G040000 Populus trichocarpa HOM05D001900 ORTHO05D003003 1.0e-17 94.0 50 82.0
SGA_v2.0_scaffold66G22376 Striga asiatica HOM05D001900 ORTHO05D003003 1.0e-17 94.0 50 84.0
TAR623G1140 Trochodendron aralioides HOM05D001900 ORTHO05D003003 1.0e-17 94.0 50 78.0
TWI32G1012 Tripterygium wilfordii HOM05D001900 ORTHO05D003003 1.4e-17 93.6 50 82.0
Oeu052789.1 Olea europaea HOM05D001900 ORTHO05D003003 1.8e-17 93.2 50 82.0
Sabra19G0050300 Salix brachista HOM05D001900 ORTHO05D003003 1.8e-17 93.2 50 82.0
Medtr6g027590 Medicago truncatula HOM05D001900 ORTHO05D003003 2.3e-17 92.8 50 80.0
Nitab4.5_0009998g0010 Nicotiana tabacum HOM05D001900 ORTHO05D003003 2.3e-17 92.8 49 85.7
Psat1g091400 Pisum sativum HOM05D001900 ORTHO05D003003 2.3e-17 92.8 50 80.0
Aa31LG11G9510 Aethionema arabicum HOM05D001900 ORTHO05D003003 3.9e-17 92.0 50 82.0
Lj2g0025638 Lotus japonicus HOM05D001900 ORTHO05D003003 3.9e-17 92.0 50 80.0
Os03g0792600 Oryza sativa ssp. japonica HOM05D001900 ORTHO05D003003 3.9e-17 92.0 49 79.6
Aqoxy2G00581 Aquilegia oxysepala HOM05D001900 ORTHO05D003003 5.2e-17 91.7 50 78.0
C02p58260 Brassica napus HOM05D001900 ORTHO05D003003 5.2e-17 91.7 50 80.0
BolC2t11892H Brassica oleracea HOM05D001900 ORTHO05D003003 5.2e-17 91.7 50 80.0
PSO339G1619 Papaver somniferum HOM05D001900 ORTHO05D003003 5.2e-17 91.7 50 78.0
EL10Ac5g11694 Beta vulgaris HOM05D001900 ORTHO05D003003 6.7e-17 91.3 50 78.0
CDE07G1554 Ceratophyllum demersum HOM05D001900 ORTHO05D003003 6.7e-17 91.3 50 74.0
Ca_11698_v3 Cicer arietinum L. HOM05D001900 ORTHO05D003003 6.7e-17 91.3 50 78.0
Ca_25350_v3 Cicer arietinum L. HOM05D001900 ORTHO05D003003 6.7e-17 91.3 50 78.0
Eucgr.A02138 Eucalyptus grandis HOM05D001900 ORTHO05D003003 6.7e-17 91.3 50 78.0
Medtr6g471010 Medicago truncatula HOM05D001900 ORTHO05D003003 6.7e-17 91.3 50 78.0
TPR.G25364 Trifolium pratense HOM05D001900 ORTHO05D003003 6.7e-17 91.3 50 78.0
AT5G27740 Arabidopsis thaliana HOM05D001900 ORTHO05D003003 1.1e-16 90.5 50 78.0
CARHR186260 Cardamine hirsuta HOM05D001900 ORTHO05D003003 1.1e-16 90.5 50 78.0
Thhalv10004490m.g Eutrema salsugineum HOM05D001900 ORTHO05D003003 1.1e-16 90.5 50 76.0
Glyma.05G089100 Glycine max HOM05D001900 ORTHO05D003003 1.1e-16 90.5 50 78.0
Manes.08G153200 Manihot esculenta HOM05D001900 ORTHO05D003003 1.1e-16 90.5 50 80.0
Thecc.05G242500 Theobroma cacao HOM05D001900 ORTHO05D003003 1.1e-16 90.5 49 79.6
AL6G39200 Arabidopsis lyrata HOM05D001900 ORTHO05D003003 1.5e-16 90.1 50 78.0
BcaC03g17801 Brassica carinata HOM05D001900 ORTHO05D003003 1.5e-16 90.1 50 78.0
A02p38740 Brassica napus HOM05D001900 ORTHO05D003003 1.5e-16 90.1 50 78.0
A06p37350 Brassica napus HOM05D001900 ORTHO05D003003 1.5e-16 90.1 50 78.0
C07p41110 Brassica napus HOM05D001900 ORTHO05D003003 1.5e-16 90.1 50 78.0
BraA02t08851Z Brassica rapa HOM05D001900 ORTHO05D003003 1.5e-16 90.1 50 78.0
BraA06t26658Z Brassica rapa HOM05D001900 ORTHO05D003003 1.5e-16 90.1 50 78.0
Carub.0006s2482 Capsella rubella HOM05D001900 ORTHO05D003003 1.5e-16 90.1 50 78.0
DCAR_013487 Daucus carota HOM05D001900 ORTHO05D003003 1.5e-16 90.1 50 78.0
HanXRQChr14g0433601 Helianthus annuus HOM05D001900 ORTHO05D003003 1.5e-16 90.1 50 82.0
Sp2g20910 Schrenkiella parvula HOM05D001900 ORTHO05D003003 1.5e-16 90.1 50 78.0
Sc22g0003180 Simmondsia chinensis HOM05D001900 ORTHO05D003003 1.5e-16 90.1 50 74.0
VMungo0464G0076 Vigna mungo HOM05D001900 ORTHO05D003003 1.5e-16 90.1 50 78.0
SEGI_07940 Sequoiadendron giganteum HOM05D001900 ORTHO05D003003 2.6e-16 89.4 48 75.0
AagrBONN_evm.TU.Sc2ySwM_117.2372 Anthoceros agrestis HOM05D001900 ORTHO05D003003 3.3e-16 89.0 49 75.5
BcaB04g19686 Brassica carinata HOM05D001900 ORTHO05D003003 3.3e-16 89.0 50 76.0
BcaB07g34200 Brassica carinata HOM05D001900 ORTHO05D003003 3.3e-16 89.0 50 76.0
Phvul.004G076500 Phaseolus vulgaris HOM05D001900 ORTHO05D003003 4.4e-16 88.6 50 76.0
Zm00001eb060330 Zea mays HOM05D001900 ORTHO05D003003 4.4e-16 88.6 48 77.1
Zm00001eb213170 Zea mays HOM05D001900 ORTHO05D003003 4.4e-16 88.6 48 77.1
ATR0697G074 Amborella trichopoda HOM05D001900 ORTHO05D003003 5.7e-16 88.2 49 73.5
Nn2g14554 Nelumbo nucifera HOM05D001900 ORTHO05D003003 5.7e-16 88.2 50 74.0
Psat1g030560 Pisum sativum HOM05D001900 ORTHO05D003003 5.7e-16 88.2 50 76.0
CBR_g29296 Chara braunii HOM05D001900 ORTHO05D003003 7.4e-16 87.8 51 70.6
PSO384G1286 Papaver somniferum HOM05D001900 ORTHO05D003003 7.4e-16 87.8 50 76.0
Pp3c25_5630 Physcomitrium patens HOM05D001900 ORTHO05D003003 7.4e-16 87.8 51 72.5
HanXRQChr14g0453631 Helianthus annuus HOM05D001900 ORTHO05D003003 9.7e-16 87.4 57 71.9
BolC7t44638H Brassica oleracea HOM05D001900 ORTHO05D003003 1.7e-15 86.7 50 76.0
CDE06G2247 Ceratophyllum demersum HOM05D001900 ORTHO05D003003 3.7e-15 85.5 49 69.4
Mapoly0170s0033 Marchantia polymorpha HOM05D001900 ORTHO05D003003 8.2e-15 84.3 51 68.6
SMO271G0133 Selaginella moellendorffii HOM05D001900 ORTHO05D003003 4.1e-14 82.0 50 68.0
ClCG04G004690 Citrullus lanatus HOM05D001900 ORTHO05D003003 7.7e-13 77.8 87 49.4
SGA_v2.0_scaffold60G20921 Striga asiatica HOM05D001900 ORTHO05D402831 1.0e-12 77.4 49 67.3
Cre16.g679950 Chlamydomonas reinhardtii HOM05D001900 ORTHO05D003003 6.5e-12 74.7 49 63.3
MCO13G013 Micromonas commoda HOM05D001900 ORTHO05D003003 6.5e-12 74.7 49 63.3
SGA_v2.0_scaffold69G23218 Striga asiatica HOM05D001900 ORTHO05D003003 1.1e-11 73.9 39 84.6
PRCOL_00007014 Prasinoderma coloniale HOM05D001900 ORTHO05D003003 4.2e-11 72.0 49 59.2
HanXRQChr09g0242001 Helianthus annuus HOM05D001900 ORTHO05D003003 2.7e-10 69.3 49 65.3
THA.LOC104824562 Tarenaya hassleriana HOM05D001900 ORTHO05D003003 1.7e-07 60.1 50 58.0
Cfa025645 Carpinus fangiana HOM05D001900 ORTHO05D003003 3.7e-07 58.9 52 42.3
AagrBONN_evm.TU.Sc2ySwM_117.1440 Anthoceros agrestis HOM05D001900 ORTHO05D003003 6.3e-07 58.2 47 55.3
Thhalv10005385m.g Eutrema salsugineum HOM05D001900 ORTHO05D003003 2.4e-06 56.2 32 71.9
AL1G34850 Arabidopsis lyrata HOM05D001470 ORTHO05D006430 4.1e-06 55.5 48 43.8
AT1G21690 Arabidopsis thaliana HOM05D001470 ORTHO05D006430 4.1e-06 55.5 48 43.8
Carub.0001s2112 Capsella rubella HOM05D001470 ORTHO05D006430 4.1e-06 55.5 48 43.8
FvH4_2g27570 Fragaria vesca HOM05D001470 ORTHO05D006430 4.1e-06 55.5 48 43.8
FAN15G1662 Fragaria x ananassa HOM05D001470 ORTHO05D006430 4.1e-06 55.5 48 43.8
FAN24G2905 Fragaria x ananassa HOM05D001470 ORTHO05D006430 4.1e-06 55.5 48 43.8
FAN27G2248 Fragaria x ananassa HOM05D001470 ORTHO05D006430 4.1e-06 55.5 48 43.8
FAN20G2509 Fragaria x ananassa HOM05D001470 ORTHO05D006430 5.3e-06 55.1 48 43.8
TAR381G1572 Trochodendron aralioides HOM05D001900 ORTHO05D003003 5.3e-06 55.1 56 42.9
CDE07G1761 Ceratophyllum demersum HOM05D001470 ORTHO05D006430 9.1e-06 54.3 48 43.8
DCAR_025953 Daucus carota HOM05D001900 ORTHO05D003003 9.1e-06 54.3 57 42.1
VMungo1309G0926 Vigna mungo HOM05D001470 ORTHO05D006430 9.1e-06 54.3 35 60.0


User provided reference genes

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