Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g16900 Fragaria vesca HOM05D005316 ORTHO05D006495 0.0e+00 1392.1 956 100.0
FAN14G0140 Fragaria x ananassa HOM05D005316 ORTHO05D006495 0.0e+00 1381.7 956 99.5
FAN05G5169 Fragaria x ananassa HOM05D005316 ORTHO05D006495 0.0e+00 1359.7 956 98.6
FAN05G1083 Fragaria x ananassa HOM05D005316 ORTHO05D006495 0.0e+00 1354.3 956 98.3
FAN09G0678 Fragaria x ananassa HOM05D005316 ORTHO05D006495 0.0e+00 1345.9 956 98.0
RcHm_v2.0_Chr3g0470921 Rosa chinensis HOM05D005316 ORTHO05D006495 0.0e+00 1273.8 958 94.4
Prupe.7G125100 Prunus persica HOM05D005316 ORTHO05D006495 6.3e-305 1050.8 955 82.3
MD12G1106200 Malus domestica HOM05D005316 ORTHO05D006495 7.7e-295 1017.3 948 81.2
Actinidia26652 Actinidia chinensis HOM05D005316 ORTHO05D006495 2.7e-276 955.7 957 76.9
Thecc.05G072100 Theobroma cacao HOM05D005316 ORTHO05D006495 2.6e-274 949.1 934 77.6
Ciclev10010984m.g Citrus clementina HOM05D005316 ORTHO05D006495 4.4e-274 948.3 960 76.4
Sabra06G0095300 Salix brachista HOM05D005316 ORTHO05D006495 3.7e-273 945.3 938 76.9
Cpa.g.sc5.157 Carica papaya HOM05D005316 ORTHO05D006495 8.2e-273 944.1 934 78.3
Potri.006G121100 Populus trichocarpa HOM05D005316 ORTHO05D006495 1.8e-272 943.0 960 74.1
Gohir.A04G069900 Gossypium hirsutum HOM05D005316 ORTHO05D006495 1.3e-270 936.8 945 76.6
Gohir.D04G108500 Gossypium hirsutum HOM05D005316 ORTHO05D006495 1.3e-270 936.8 932 77.3
Atru.chr8.1745 Acer truncatum HOM05D005316 ORTHO05D006495 1.5e-269 933.3 940 77.1
Gorai.009G412600 Gossypium raimondii HOM05D005316 ORTHO05D006495 7.2e-269 931.0 932 76.9
Rhsim03G0088900 Rhododendron simsii HOM05D005316 ORTHO05D006495 9.4e-269 930.6 972 72.4
Manes.09G050526 Manihot esculenta HOM05D005316 ORTHO05D006495 6.1e-268 927.9 961 74.6
Eucgr.K02435 Eucalyptus grandis HOM05D005316 ORTHO05D006495 6.8e-267 924.5 958 76.1
CiPaw.09G002900 Carya illinoinensis HOM05D005316 ORTHO05D006495 9.8e-266 920.6 937 76.5
CANSAT80G2075 Cannabis sativa HOM05D005316 ORTHO05D006495 6.3e-265 917.9 951 76.0
Duzib128G2040 Durio zibethinus HOM05D005316 ORTHO05D006495 1.4e-264 916.8 957 75.2
TWI77G0675 Tripterygium wilfordii HOM05D005316 ORTHO05D006495 2.0e-263 912.9 933 76.1
TAR369G0309 Trochodendron aralioides HOM05D005316 ORTHO05D006495 8.6e-262 907.5 950 75.5
vmacro07322 Vaccinium macrocarpon HOM05D005316 ORTHO05D006495 2.5e-261 906.0 996 60.4
CSS0008696 Camellia sinensis var. sinensis HOM05D005316 ORTHO05D006495 9.5e-261 904.0 956 64.0
VMungo1383G0853 Vigna mungo HOM05D005316 ORTHO05D006495 1.8e-259 899.8 956 73.0
QL07p042170 Quercus lobata HOM05D005316 ORTHO05D006495 3.0e-259 899.0 1130 66.7
ClCG04G009490 Citrullus lanatus HOM05D005316 ORTHO05D006495 1.8e-256 889.8 949 74.1
Lalb_Chr01g0018571 Lupinus albus HOM05D005316 ORTHO05D006495 1.2e-255 887.1 956 74.3
Nn6g35213 Nelumbo nucifera HOM05D005316 ORTHO05D006495 2.0e-255 886.3 931 73.7
PGR142G2834 Punica granatum HOM05D005316 ORTHO05D006495 5.9e-255 884.8 937 64.7
Peaxi162Scf00435g01012 Petunia axillaris HOM05D005316 ORTHO05D006495 5.0e-254 881.7 956 72.9
CsaV3_6G040110 Cucumis sativus L. HOM05D005316 ORTHO05D006495 6.6e-254 881.3 947 73.3
MELO3C024484.2 Cucumis melo HOM05D005316 ORTHO05D006495 1.5e-253 880.2 950 73.3
Glyma.19G186600 Glycine max HOM05D005316 ORTHO05D006495 2.5e-253 879.4 956 73.7
COL.COLO4_26906 Corchorus olitorius HOM05D005316 ORTHO05D006495 1.0e-251 874.0 957 72.7
Aqoxy1G00948 Aquilegia oxysepala HOM05D005316 ORTHO05D006495 6.8e-251 871.3 947 71.3
Glyma.03G186500 Glycine max HOM05D005316 ORTHO05D006495 1.2e-250 870.5 956 73.8
Cc06_g04580 Coffea canephora HOM05D005316 ORTHO05D006495 1.5e-250 870.2 936 74.0
Nitab4.5_0003314g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 5.8e-250 868.2 960 72.3
arahy.Tifrunner.gnm1.ann1.RNM8HY Arachis hypogaea HOM05D005316 ORTHO05D006495 9.8e-250 867.5 985 71.4
Phvul.001G181500 Phaseolus vulgaris HOM05D005316 ORTHO05D006495 1.3e-249 867.1 956 73.5
DCAR_020803 Daucus carota HOM05D005316 ORTHO05D006495 2.9e-249 865.9 957 72.2
arahy.Tifrunner.gnm1.ann1.731ZEV Arachis hypogaea HOM05D005316 ORTHO05D006495 2.4e-248 862.8 965 72.1
TPR.G12554 Trifolium pratense HOM05D005316 ORTHO05D006495 2.3e-246 856.3 956 72.7
Ca_08924_v3 Cicer arietinum L. HOM05D005316 ORTHO05D006495 8.6e-246 854.4 956 72.4
Medtr4g123597 Medicago truncatula HOM05D005316 ORTHO05D006495 1.1e-245 854.0 955 72.1
THA.LOC104802568 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 6.2e-244 848.2 934 72.3
Haze_19439 Corylus avellana HOM05D005316 ORTHO05D006495 8.0e-244 847.8 953 62.7
PSO063G2956 Papaver somniferum HOM05D005316 ORTHO05D006495 3.4e-242 842.4 950 65.3
PGSC0003DMG400025700 Solanum tuberosum HOM05D005316 ORTHO05D006495 9.8e-242 840.9 959 71.0
Solyc10g039190.2 Solanum lycopersicum HOM05D005316 ORTHO05D006495 1.3e-241 840.5 959 70.9
Sed0019607 Sechium edule HOM05D005316 ORTHO05D006495 1.7e-241 840.1 948 71.7
GSVIVG01033690001 Vitis vinifera HOM05D005316 ORTHO05D006495 1.1e-240 837.4 959 72.4
Sopen10g012250 Solanum pennellii HOM05D005316 ORTHO05D006495 2.4e-240 836.3 959 70.8
PSO339G4035 Papaver somniferum HOM05D005316 ORTHO05D006495 7.0e-240 834.7 961 65.8
Aa31LG9G1930 Aethionema arabicum HOM05D005316 ORTHO05D006495 6.0e-239 831.6 939 69.3
Lsat_1_v5_gn_6_28620 Lactuca sativa HOM05D005316 ORTHO05D006495 1.3e-238 830.5 960 70.9
AUR62043277 Chenopodium quinoa HOM05D005316 ORTHO05D006495 6.6e-238 828.2 969 66.4
Nitab4.5_0002535g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 1.1e-237 827.4 938 72.1
THA.LOC104820227 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 7.3e-237 824.7 931 70.8
Lj1g0025750 Lotus japonicus HOM05D005316 ORTHO05D006495 2.8e-236 822.8 956 71.0
Dinv37343 Davidia involucrata HOM05D005316 ORTHO05D006495 1.8e-235 820.1 746 74.9
EL10Ac7g16684 Beta vulgaris HOM05D005316 ORTHO05D006495 1.2e-234 817.4 962 67.4
Thhalv10024329m.g Eutrema salsugineum HOM05D005316 ORTHO05D006495 2.6e-234 816.2 959 68.9
Psat4g020280 Pisum sativum HOM05D005316 ORTHO05D006495 3.4e-234 815.8 956 70.8
Carub.0003s2158 Capsella rubella HOM05D005316 ORTHO05D006495 4.4e-234 815.5 934 69.8
HanXRQChr13g0400681 Helianthus annuus HOM05D005316 ORTHO05D006495 4.4e-234 815.5 958 69.5
ECA233G4339 Erigeron canadensis HOM05D005316 ORTHO05D006495 1.3e-233 813.9 947 70.7
SalBow3G2891 Salvia bowleyana HOM05D005316 ORTHO05D006495 5.4e-232 808.5 959 69.9
AL3G35650 Arabidopsis lyrata HOM05D005316 ORTHO05D006495 7.1e-232 808.1 935 68.3
Oeu056529.1 Olea europaea HOM05D005316 ORTHO05D006495 7.1e-232 808.1 958 70.4
Sp7g13750 Schrenkiella parvula HOM05D005316 ORTHO05D006495 1.2e-231 807.4 959 68.3
CARHR097490 Cardamine hirsuta HOM05D005316 ORTHO05D006495 7.8e-231 804.7 955 67.3
Ah.15g091450 Amaranthus hybridus HOM05D005316 ORTHO05D006495 6.6e-230 801.6 967 66.8
SGA_v2.0_scaffold40G15467 Striga asiatica HOM05D005316 ORTHO05D006495 6.6e-230 801.6 983 57.7
AT3G21540 Arabidopsis thaliana HOM05D005316 ORTHO05D006495 8.6e-230 801.2 954 67.0
MSTRG.5779 Avicennia marina HOM05D005316 ORTHO05D006495 5.8e-226 788.5 959 68.5
A01p22070 Brassica napus HOM05D005316 ORTHO05D006495 2.9e-225 786.2 959 68.3
AUR62026938 Chenopodium quinoa HOM05D005316 ORTHO05D006495 4.9e-225 785.4 967 65.5
BraA01t02113Z Brassica rapa HOM05D005316 ORTHO05D006495 1.4e-224 783.9 959 68.2
C01p27470 Brassica napus HOM05D005316 ORTHO05D006495 2.4e-224 783.1 959 68.1
BolC1t02686H Brassica oleracea HOM05D005316 ORTHO05D006495 6.0e-223 778.5 959 67.9
BcaC09g50240 Brassica carinata HOM05D005316 ORTHO05D006495 3.0e-222 776.2 959 67.9
CAN.G1038.14 Capsicum annuum HOM05D005316 ORTHO05D006495 3.6e-220 769.2 965 67.7
MBI19_g03558_MAGBIO Magnolia biondii HOM05D005316 ORTHO05D006495 6.2e-220 768.5 974 48.0
PGSC0003DMG400013161 Solanum tuberosum HOM05D005316 ORTHO05D006495 5.8e-218 761.9 959 68.2
Nitab4.5_0000108g0390 Nicotiana tabacum HOM05D005316 ORTHO05D006495 6.2e-212 741.9 961 68.0
Sc20g0005710 Simmondsia chinensis HOM05D005316 ORTHO05D006495 1.8e-211 740.3 886 69.5
Lj3C1008T11 Lonicera japonica HOM05D005316 ORTHO05D006495 9.0e-211 738.0 820 75.5
CDE07G2059 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 2.9e-209 733.0 954 67.1
Migut.J00458 Erythranthe guttata HOM05D005316 ORTHO05D006495 2.9e-209 733.0 966 66.5
HPP92_025964 Vanilla planifolia HOM05D005316 ORTHO05D006495 7.1e-208 728.4 959 63.8
CAN.G363.3 Capsicum annuum HOM05D005316 ORTHO05D006495 2.8e-204 716.5 1025 58.0
RcHm_v2.0_Chr7g0224541 Rosa chinensis HOM05D005316 ORTHO05D006495 9.9e-202 708.0 921 64.4
SHI18788 Sapria himalayana HOM05D005316 ORTHO05D006495 9.9e-202 708.0 865 69.7
ATR0661G280 Amborella trichopoda HOM05D005316 ORTHO05D006495 1.7e-201 707.2 956 62.7
unitig_578.g15787 Utricularia gibba HOM05D005316 ORTHO05D006495 4.9e-201 705.7 962 64.4
Os03g0151700 Oryza sativa ssp. japonica HOM05D005316 ORTHO05D006495 7.1e-192 675.2 937 63.3
FAN02G2889 Fragaria x ananassa HOM05D005316 ORTHO05D006495 2.1e-191 673.7 597 83.4
BcaC06g32938 Brassica carinata HOM05D005316 ORTHO05D006495 3.1e-171 606.7 951 52.9
Zm00001eb004160 Zea mays HOM05D005316 ORTHO05D006495 2.7e-167 593.6 727 62.7
SEGI_01067 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 2.3e-166 590.5 868 62.6
SMO144G0213 Selaginella moellendorffii HOM05D005316 ORTHO05D006495 2.0e-157 560.8 946 55.9
Mapoly0021s0013 Marchantia polymorpha HOM05D005316 ORTHO05D006495 1.4e-155 554.7 962 56.8
CBR_g3060 Chara braunii HOM05D005316 ORTHO05D006495 1.0e-153 548.5 994 57.0
Pp3c24_9020 Physcomitrium patens HOM05D005316 ORTHO05D006495 8.8e-150 535.4 965 53.1
Pp3c24_9070 Physcomitrium patens HOM05D005316 ORTHO05D006495 8.8e-150 535.4 965 53.1
AagrBONN_evm.TU.Sc2ySwM_344.3757 Anthoceros agrestis HOM05D005316 ORTHO05D006495 1.6e-146 524.6 953 54.5
RcHm_v2.0_Chr2g0174151 Rosa chinensis HOM05D005316 ORTHO05D006495 1.1e-120 438.7 592 45.8
CDE06G1287 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 6.2e-119 433.0 655 44.0
Cre10.g438700 Chlamydomonas reinhardtii HOM05D005316 ORTHO05D006495 3.2e-99 367.5 950 46.7
Lalb_Chr20g0112451 Lupinus albus HOM05D005316 ORTHO05D006495 6.0e-98 363.2 299 64.5
MCO12G069 Micromonas commoda HOM05D005316 ORTHO05D006495 4.8e-95 353.6 952 42.1
PRCOL_00001463 Prasinoderma coloniale HOM05D005316 ORTHO05D006495 3.2e-67 261.2 735 42.0
Psat3g110240 Pisum sativum HOM05D005316 ORTHO05D017863 9.1e-46 189.9 135 67.4
Psat7g226920 Pisum sativum HOM05D003193 ORTHO05D006495 9.1e-46 189.9 130 70.8
Gohir.A13G089800 Gossypium hirsutum HOM05D005316 ORTHO05D006495 2.1e-42 178.7 183 53.0
Psat0s3791g0160 Pisum sativum HOM05D005316 ORTHO05D006495 8.0e-42 176.8 125 68.0
Psat3g057760 Pisum sativum HOM05D005316 ORTHO05D006495 1.1e-35 156.4 125 60.8
Lalb_Chr20g0112411 Lupinus albus HOM05D005316 ORTHO05D006495 5.2e-33 147.5 128 60.9
PGSC0003DMG400023254 Solanum tuberosum HOM05D005316 ORTHO05D006495 2.0e-32 145.6 193 45.1
Psat2g167720 Pisum sativum HOM05D005316 ORTHO05D006495 4.5e-29 134.4 125 56.0
SEGI_29002 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 1.2e-26 126.3 126 52.4
Lj3C1008T12 Lonicera japonica HOM05D005316 ORTHO05D006495 1.3e-23 116.3 81 74.1
SHI18789 Sapria himalayana HOM05D005316 ORTHO05D006495 1.3e-20 106.3 82 67.1
Psat5g092920 Pisum sativum HOM05D000083 ORTHO05D001244 1.8e-17 95.9 90 57.8
SEGI_05684 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 3.1e-17 95.1 91 56.0
Sc24g0000540 Simmondsia chinensis HOM05D005316 ORTHO05D006495 4.0e-17 94.7 88 52.3
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 1.5e-16 92.8 67 71.6
PGSC0003DMG400013159 Solanum tuberosum HOM05D005316 ORTHO05D006495 1.2e-13 83.2 71 64.8
RcHm_v2.0_Chr7g0191911 Rosa chinensis HOM05D005316 ORTHO05D006495 2.0e-13 82.4 55 76.4
Lalb_Chr20g0112421 Lupinus albus HOM05D005316 ORTHO05D006495 3.5e-13 81.6 77 57.1
SEGI_04707 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 1.3e-12 79.7 92 47.8
PGSC0003DMG400036928 Solanum tuberosum HOM05D005316 ORTHO05D006495 7.3e-11 73.9 103 50.5
Cfa003664 Carpinus fangiana HOM05D005316 ORTHO05D006495 3.4e-08 65.1 45 68.9
Psat3g191240 Pisum sativum HOM05D005316 ORTHO05D006495 2.9e-07 62.0 61 57.4
A04p25240 Brassica napus HOM05D000836 ORTHO05D000709 4.9e-07 61.2 154 29.2
BraA04t18027Z Brassica rapa HOM05D000836 ORTHO05D000709 4.9e-07 61.2 154 29.2
CANSAT78G1202 Cannabis sativa HOM05D000836 ORTHO05D000709 1.1e-06 60.1 137 27.0
Solyc09g018520.1 Solanum lycopersicum HOM05D005316 ORTHO05D006495 1.9e-06 59.3 84 42.9
Sed0000820 Sechium edule HOM05D000836 ORTHO05D000709 2.4e-06 58.9 120 30.8
CiPaw.01G122500 Carya illinoinensis HOM05D000836 ORTHO05D000709 3.2e-06 58.5 137 26.3
Lalb_Chr03g0036201 Lupinus albus HOM05D000836 ORTHO05D000709 3.2e-06 58.5 144 27.8


User provided reference genes

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