Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g06460 Fragaria vesca HOM05D000246 ORTHO05D007179 6.5e-31 136.7 68 100.0
RcHm_v2.0_Chr3g0455521 Rosa chinensis HOM05D000246 ORTHO05D007179 1.2e-11 72.8 71 56.3
FAN02G0914 Fragaria x ananassa HOM05D000246 ORTHO05D007179 2.6e-11 71.6 71 59.2
RcHm_v2.0_Chr6g0295551 Rosa chinensis HOM05D000246 ORTHO05D007179 4.4e-11 70.9 71 54.9
FvH4_6g06440 Fragaria vesca HOM05D000246 ORTHO05D007179 9.8e-11 69.7 71 54.9
FAN05G3600 Fragaria x ananassa HOM05D000246 ORTHO05D007179 9.8e-11 69.7 70 58.6
FAN14G0626 Fragaria x ananassa HOM05D000246 ORTHO05D007179 9.8e-11 69.7 71 54.9
Prupe.6G321800 Prunus persica HOM05D000246 ORTHO05D007179 9.8e-11 69.7 47 70.2
MD04G1201600 Malus domestica HOM05D000246 ORTHO05D007179 1.1e-09 66.2 47 66.0
TPR.G6096 Trifolium pratense HOM05D000246 ORTHO05D007179 1.8e-09 65.5 47 63.8
Lsat_1_v5_gn_9_123801 Lactuca sativa HOM05D000246 ORTHO05D007179 5.4e-09 63.9 51 58.8
Medtr1g083250 Medicago truncatula HOM05D000246 ORTHO05D007179 5.4e-09 63.9 47 61.7
Lj5g0018456 Lotus japonicus HOM05D000246 ORTHO05D007179 9.1e-09 63.2 46 63.0
Psat6g150320 Pisum sativum HOM05D000246 ORTHO05D007179 9.1e-09 63.2 47 63.8
COL.COLO4_10505 Corchorus olitorius HOM05D000246 ORTHO05D007179 1.2e-08 62.8 47 63.8
Actinidia05681 Actinidia chinensis HOM05D000246 ORTHO05D007179 1.6e-08 62.4 54 57.4
VMungo0720G1583 Vigna mungo HOM05D000246 ORTHO05D007179 1.6e-08 62.4 46 60.9
Phvul.007G196600 Phaseolus vulgaris HOM05D000246 ORTHO05D007179 2.0e-08 62.0 46 60.9
Glyma.20G236000 Glycine max HOM05D000246 ORTHO05D007179 3.5e-08 61.2 66 48.5
Thecc.05G311900 Theobroma cacao HOM05D000246 ORTHO05D007179 4.5e-08 60.8 46 65.2
Aqoxy2G03005 Aquilegia oxysepala HOM05D000246 ORTHO05D007179 5.9e-08 60.5 42 69.0
Ca_10124_v3 Cicer arietinum L. HOM05D000246 ORTHO05D007179 5.9e-08 60.5 47 59.6
Cpa.g.sc48.83 Carica papaya HOM05D000246 ORTHO05D007179 7.7e-08 60.1 67 49.3
TAR633G0108 Trochodendron aralioides HOM05D000246 ORTHO05D007179 7.7e-08 60.1 43 72.1
CANSAT54G2417 Cannabis sativa HOM05D000246 ORTHO05D007179 1.0e-07 59.7 48 62.5
Eucgr.H04508 Eucalyptus grandis HOM05D000246 ORTHO05D007179 1.0e-07 59.7 47 61.7
Peaxi162Scf00037g00932 Petunia axillaris HOM05D000246 ORTHO05D007179 1.0e-07 59.7 51 54.9
Migut.B01029 Erythranthe guttata HOM05D000246 ORTHO05D007179 1.3e-07 59.3 48 64.6
Gohir.D11G277100 Gossypium hirsutum HOM05D000246 ORTHO05D007179 1.3e-07 59.3 47 63.8
TWI56G0873 Tripterygium wilfordii HOM05D000246 ORTHO05D007179 1.3e-07 59.3 54 59.3
Cc00_g10440 Coffea canephora HOM05D000246 ORTHO05D007179 1.7e-07 58.9 48 58.3
Duzib177G0836 Durio zibethinus HOM05D000246 ORTHO05D007179 1.7e-07 58.9 47 63.8
ClCG02G015470 Citrullus lanatus HOM05D000246 ORTHO05D007179 2.3e-07 58.5 48 64.6
MBI19_g30059_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D007179 2.3e-07 58.5 47 66.0
Rhsim07G0187000 Rhododendron simsii HOM05D000246 ORTHO05D007179 2.3e-07 58.5 55 54.5
Manes.08G118800 Manihot esculenta HOM05D000246 ORTHO05D007179 2.9e-07 58.2 48 64.6
SHI18109 Sapria himalayana HOM05D000246 ORTHO05D007179 2.9e-07 58.2 62 50.0
Cfa006619 Carpinus fangiana HOM05D000246 ORTHO05D007179 3.8e-07 57.8 48 62.5
CsaV3_2G006600 Cucumis sativus L. HOM05D000246 ORTHO05D007179 3.8e-07 57.8 48 62.5
Dinv40315 Davidia involucrata HOM05D000246 ORTHO05D007179 3.8e-07 57.8 48 62.5
Gorai.007G299200 Gossypium raimondii HOM05D000246 ORTHO05D007179 5.0e-07 57.4 47 61.7
QL03p011605 Quercus lobata HOM05D000246 ORTHO05D007179 5.0e-07 57.4 48 62.5
QL03p021635 Quercus lobata HOM05D000246 ORTHO05D007179 5.0e-07 57.4 48 62.5
HanXRQChr03g0072511 Helianthus annuus HOM05D000246 ORTHO05D007179 6.6e-07 57.0 55 54.5
Solyc01g099460.3 Solanum lycopersicum HOM05D000246 ORTHO05D007179 6.6e-07 57.0 48 58.3
Sopen01g043000 Solanum pennellii HOM05D000246 ORTHO05D007179 6.6e-07 57.0 48 58.3
Nitab4.5_0008329g0030 Nicotiana tabacum HOM05D000246 ORTHO05D007179 8.6e-07 56.6 48 58.3
Os05g0150600 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D007179 8.6e-07 56.6 46 56.5
PSO170G0679 Papaver somniferum HOM05D000246 ORTHO05D007179 8.6e-07 56.6 46 63.0
PSO210G2254 Papaver somniferum HOM05D000246 ORTHO05D007179 8.6e-07 56.6 46 60.9
GSVIVG01031124001 Vitis vinifera HOM05D001472 ORTHO05D002655 8.6e-07 56.6 47 63.8
ATR0210G017 Amborella trichopoda HOM05D000246 ORTHO05D007179 1.1e-06 56.2 47 63.8
vmacro04965 Vaccinium macrocarpon HOM05D000246 ORTHO05D007179 1.1e-06 56.2 56 55.4
arahy.Tifrunner.gnm1.ann1.K95L4M Arachis hypogaea HOM05D000246 ORTHO05D007179 1.5e-06 55.8 58 48.3
CSS0023091 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D007179 1.5e-06 55.8 55 52.7
CSS0043712 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D007179 1.5e-06 55.8 55 52.7
Lj5A421T63 Lonicera japonica HOM05D000246 ORTHO05D007179 1.5e-06 55.8 50 58.0
Oeu012115.1 Olea europaea HOM05D000246 ORTHO05D007179 1.5e-06 55.8 54 57.4
Lalb_Chr21g0310611 Lupinus albus HOM05D000246 ORTHO05D007179 1.9e-06 55.5 62 48.4
Nitab4.5_0002344g0100 Nicotiana tabacum HOM05D000246 ORTHO05D007179 1.9e-06 55.5 48 58.3
PGR031G3950 Punica granatum HOM05D000246 ORTHO05D007179 1.9e-06 55.5 52 55.8
arahy.Tifrunner.gnm1.ann1.G0LK44 Arachis hypogaea HOM05D000246 ORTHO05D007179 2.5e-06 55.1 45 60.0
CiPaw.08G162700 Carya illinoinensis HOM05D000246 ORTHO05D007179 2.5e-06 55.1 48 62.5
Lj5A431G15 Lonicera japonica HOM05D000246 ORTHO05D007179 2.5e-06 55.1 50 56.0
Zm00001eb354210 Zea mays HOM05D000246 ORTHO05D007179 2.5e-06 55.1 47 57.4
Gohir.A11G267000 Gossypium hirsutum HOM05D000246 ORTHO05D007179 3.3e-06 54.7 47 57.4
Nn3g21421 Nelumbo nucifera HOM05D000246 ORTHO05D007179 3.3e-06 54.7 47 57.4
CDE01G0252 Ceratophyllum demersum HOM05D000246 ORTHO05D007179 5.5e-06 53.9 55 54.5
ECA240G0991 Erigeron canadensis HOM05D000246 ORTHO05D007179 7.2e-06 53.5 42 59.5
Thhalv10003644m.g Eutrema salsugineum HOM05D000246 ORTHO05D007179 7.2e-06 53.5 48 56.2
C07p41090 Brassica napus HOM05D000246 ORTHO05D007179 9.5e-06 53.1 48 56.2
BolC7t44636H Brassica oleracea HOM05D000246 ORTHO05D007179 9.5e-06 53.1 48 56.2


User provided reference genes

Program Settings