Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g37300 Fragaria vesca HOM05D005338 ORTHO05D006550 2.1e-115 419.1 219 100.0
FAN08G1597 Fragaria x ananassa HOM05D005338 ORTHO05D006550 6.2e-115 417.5 219 99.5
FAN04G2403 Fragaria x ananassa HOM05D005338 ORTHO05D006550 1.5e-113 412.9 219 97.3
RcHm_v2.0_Chr5g0038311 Rosa chinensis HOM05D005338 ORTHO05D006550 1.1e-111 406.8 217 97.2
FAN13G0739 Fragaria x ananassa HOM05D005338 ORTHO05D006550 1.9e-108 396.0 203 99.0
FAN18G4080 Fragaria x ananassa HOM05D005338 ORTHO05D006550 1.9e-108 396.0 202 100.0
Prupe.1G518900 Prunus persica HOM05D005338 ORTHO05D006550 6.6e-101 370.9 214 89.7
Prupe.1G517500 Prunus persica HOM05D005338 ORTHO05D006550 8.6e-101 370.5 214 89.3
QL02p007082 Quercus lobata HOM05D005338 ORTHO05D006550 9.5e-100 367.1 217 86.6
Actinidia15288 Actinidia chinensis HOM05D005338 ORTHO05D006550 1.6e-99 366.3 217 87.1
CiPaw.15G069200 Carya illinoinensis HOM05D005338 ORTHO05D006550 3.1e-98 362.1 215 84.7
Hma1.2p1_0471F.1_g159310 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 1.2e-97 360.1 217 85.7
SGA_v2.0_scaffold4G02341 Striga asiatica HOM05D005338 ORTHO05D006550 1.2e-97 360.1 217 84.3
arahy.Tifrunner.gnm1.ann1.82M2ZV Arachis hypogaea HOM05D005338 ORTHO05D006550 1.5e-97 359.8 217 83.9
arahy.Tifrunner.gnm1.ann1.F09FAE Arachis hypogaea HOM05D005338 ORTHO05D006550 1.5e-97 359.8 217 83.9
arahy.Tifrunner.gnm1.ann1.N4382H Arachis hypogaea HOM05D005338 ORTHO05D006550 1.5e-97 359.8 217 83.9
arahy.Tifrunner.gnm1.ann1.VZ94AI Arachis hypogaea HOM05D005338 ORTHO05D006550 1.5e-97 359.8 217 83.9
Cfa002226 Carpinus fangiana HOM05D005338 ORTHO05D006550 3.4e-97 358.6 215 83.7
CSS0015965 Camellia sinensis var. sinensis HOM05D005338 ORTHO05D006550 4.4e-97 358.2 217 82.5
Cc07_g04760 Coffea canephora HOM05D005338 ORTHO05D006550 5.8e-97 357.8 217 83.4
Nn8g40744 Nelumbo nucifera HOM05D005338 ORTHO05D006550 5.8e-97 357.8 214 85.5
Nitab4.5_0000154g0040 Nicotiana tabacum HOM05D005338 ORTHO05D006550 7.6e-97 357.5 217 82.9
Cpa.g.sc337.5 Carica papaya HOM05D005338 ORTHO05D006550 9.9e-97 357.1 217 84.3
CANSAT25G1955 Cannabis sativa HOM05D005338 ORTHO05D006550 1.3e-96 356.7 217 82.9
TWI74G1059 Tripterygium wilfordii HOM05D005338 ORTHO05D006550 1.7e-96 356.3 217 80.6
VMungo1215G3044 Vigna mungo HOM05D005338 ORTHO05D006550 2.2e-96 355.9 217 82.0
Duzib147G0908 Durio zibethinus HOM05D005338 ORTHO05D006550 2.9e-96 355.5 217 83.4
Nitab4.5_0003384g0030 Nicotiana tabacum HOM05D005338 ORTHO05D006550 2.9e-96 355.5 217 82.5
VMungo1309G1758 Vigna mungo HOM05D005338 ORTHO05D006550 2.9e-96 355.5 217 82.0
Oeu012884.1 Olea europaea HOM05D005338 ORTHO05D006550 4.9e-96 354.8 217 83.9
GSVIVG01009622001 Vitis vinifera HOM05D005338 ORTHO05D006550 4.9e-96 354.8 215 83.7
Glyma.15G160500 Glycine max HOM05D005338 ORTHO05D006550 6.4e-96 354.4 215 81.9
MSTRG.2958 Avicennia marina HOM05D005338 ORTHO05D006550 1.1e-95 353.6 217 82.9
ClCG08G015430 Citrullus lanatus HOM05D005338 ORTHO05D006550 1.1e-95 353.6 217 81.6
CsaV3_2G028360 Cucumis sativus L. HOM05D005338 ORTHO05D006550 1.1e-95 353.6 217 81.6
Migut.H00565 Erythranthe guttata HOM05D005338 ORTHO05D006550 1.4e-95 353.2 217 82.0
Sed0010775 Sechium edule HOM05D005338 ORTHO05D006550 1.4e-95 353.2 217 81.6
Cfa018461 Carpinus fangiana HOM05D005338 ORTHO05D006550 1.9e-95 352.8 216 81.9
Eucgr.F01508 Eucalyptus grandis HOM05D005338 ORTHO05D006550 1.9e-95 352.8 217 82.5
Gohir.A11G203500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 1.9e-95 352.8 217 82.9
Lj4g0021487 Lotus japonicus HOM05D005338 ORTHO05D006550 1.9e-95 352.8 217 81.6
PGR083G0298 Punica granatum HOM05D005338 ORTHO05D006550 1.9e-95 352.8 217 82.5
SalBow1G1006 Salvia bowleyana HOM05D000168 ORTHO05D006550 1.9e-95 352.8 217 84.3
Ciclev10026443m.g Citrus clementina HOM05D005338 ORTHO05D006550 2.4e-95 352.4 211 84.4
Gorai.003G040400 Gossypium raimondii HOM05D005338 ORTHO05D006550 2.4e-95 352.4 217 82.5
Phvul.009G240644 Phaseolus vulgaris HOM05D005338 ORTHO05D006550 3.2e-95 352.1 217 82.5
Medtr2g438770 Medicago truncatula HOM05D005338 ORTHO05D006550 4.1e-95 351.7 215 81.9
DCAR_003287 Daucus carota HOM05D005338 ORTHO05D006550 5.4e-95 351.3 217 82.5
Gohir.D03G039200 Gossypium hirsutum HOM05D005338 ORTHO05D006550 5.4e-95 351.3 217 82.5
Gorai.007G236400 Gossypium raimondii HOM05D005338 ORTHO05D006550 7.1e-95 350.9 211 83.9
Glyma.09G054300 Glycine max HOM05D005338 ORTHO05D006550 9.2e-95 350.5 217 80.2
Gohir.A02G128500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 9.2e-95 350.5 217 82.0
Lalb_Chr15g0083931 Lupinus albus HOM05D005338 ORTHO05D006550 1.2e-94 350.1 211 82.5
EL10Ac3g06218 Beta vulgaris HOM05D005338 ORTHO05D006550 1.6e-94 349.7 215 82.8
CANSAT56G3114 Cannabis sativa HOM05D005338 ORTHO05D006550 2.1e-94 349.4 217 82.0
MBI01_g22964_MAGBIO Magnolia biondii HOM05D005338 ORTHO05D006550 2.1e-94 349.4 217 79.7
Manes.13G095300 Manihot esculenta HOM05D005338 ORTHO05D006550 7.8e-94 347.4 219 82.6
CAN.G162.113 Capsicum annuum HOM05D005338 ORTHO05D006550 1.3e-93 346.7 215 80.5
THA.LOC104824882 Tarenaya hassleriana HOM05D005338 ORTHO05D006550 1.7e-93 346.3 217 80.2
COL.COLO4_27273 Corchorus olitorius HOM05D005338 ORTHO05D006550 3.9e-93 345.1 217 82.0
Glyma.18G135700 Glycine max HOM05D005338 ORTHO05D006550 6.6e-93 344.4 217 79.7
CARHR113580 Cardamine hirsuta HOM05D005338 ORTHO05D006550 1.1e-92 343.6 217 78.3
Thecc.01G098200 Theobroma cacao HOM05D005338 ORTHO05D006550 1.9e-92 342.8 217 81.6
AT2G22370 Arabidopsis thaliana HOM05D005338 ORTHO05D006550 3.3e-92 342.0 217 79.3
Solyc06g008010.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 1.6e-91 339.7 215 79.5
PGSC0003DMG400014704 Solanum tuberosum HOM05D005338 ORTHO05D006550 1.6e-91 339.7 215 79.5
Thhalv10000318m.g Eutrema salsugineum HOM05D005338 ORTHO05D006550 3.6e-91 338.6 217 78.8
Sopen06g002850 Solanum pennellii HOM05D005338 ORTHO05D006550 3.6e-91 338.6 215 79.1
AL4G11870 Arabidopsis lyrata HOM05D005338 ORTHO05D006550 6.2e-91 337.8 217 78.3
Psat1g148520 Pisum sativum HOM05D005338 ORTHO05D006550 1.4e-90 336.7 221 76.0
vmacro21598 Vaccinium macrocarpon HOM05D005338 ORTHO05D006550 4.0e-90 335.1 206 83.0
Potri.007G095300 Populus trichocarpa HOM05D005338 ORTHO05D006550 5.2e-90 334.7 217 81.1
Hund12454 Selenicereus undatus HOM05D005338 ORTHO05D006550 5.2e-90 334.7 206 81.1
MD15G1369800 Malus domestica HOM05D005338 ORTHO05D006550 6.8e-90 334.3 220 79.5
ECA247G2066 Erigeron canadensis HOM05D005338 ORTHO05D006550 8.9e-90 334.0 219 78.5
Carub.0004s0155 Capsella rubella HOM05D005338 ORTHO05D006550 2.0e-89 332.8 217 77.4
Gohir.D11G220100 Gossypium hirsutum HOM05D005338 ORTHO05D006550 2.6e-89 332.4 208 81.7
Aqoxy6G01960 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 9.9e-89 330.5 214 76.6
unitig_744.g23988 Utricularia gibba HOM05D005338 ORTHO05D006550 1.3e-88 330.1 216 78.7
Peaxi162Scf00479g00910 Petunia axillaris HOM05D005338 ORTHO05D006550 1.7e-88 329.7 205 80.5
Medtr5g044730 Medicago truncatula HOM05D005338 ORTHO05D006550 2.2e-88 329.3 204 80.4
HanXRQChr04g0104391 Helianthus annuus HOM05D005338 ORTHO05D006550 3.8e-88 328.6 220 76.4
TPR.G29215 Trifolium pratense HOM05D005338 ORTHO05D006550 6.4e-88 327.8 204 80.4
Lsat_1_v5_gn_1_19481 Lactuca sativa HOM05D005338 ORTHO05D006550 1.9e-87 326.2 206 81.1
BcaC02g08666 Brassica carinata HOM05D005338 ORTHO05D006550 2.4e-87 325.9 218 77.1
Aqoxy1G02678 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 3.2e-87 325.5 214 75.2
PSO017G6030 Papaver somniferum HOM05D005338 ORTHO05D006550 3.2e-87 325.5 214 76.6
A04p16850 Brassica napus HOM05D005338 ORTHO05D006550 4.2e-87 325.1 218 77.1
BraA04t17318Z Brassica rapa HOM05D005338 ORTHO05D006550 4.2e-87 325.1 218 77.1
BcaC02g08711 Brassica carinata HOM05D005338 ORTHO05D006550 5.4e-87 324.7 218 77.1
C04p51430 Brassica napus HOM05D005338 ORTHO05D006550 5.4e-87 324.7 218 77.1
ATR0767G114 Amborella trichopoda HOM05D005338 ORTHO05D006550 1.6e-86 323.2 217 75.1
Haze_25403 Corylus avellana HOM05D005338 ORTHO05D006550 3.5e-86 322.0 291 62.2
BolC4t26735H Brassica oleracea HOM05D005338 ORTHO05D006550 4.6e-86 321.6 218 76.6
PSO170G4003 Papaver somniferum HOM05D005338 ORTHO05D006550 5.1e-85 318.2 214 75.7
CDE07G0352 Ceratophyllum demersum HOM05D005338 ORTHO05D006550 9.6e-84 313.9 196 81.6
Sopen03g010490 Solanum pennellii HOM05D005338 ORTHO05D006550 9.6e-84 313.9 215 74.4
Sabra07G0078500 Salix brachista HOM05D005338 ORTHO05D006550 1.3e-83 313.5 210 77.1
Sopen03g021660 Solanum pennellii HOM05D005338 ORTHO05D006550 1.6e-83 313.2 215 74.4
HPP92_021909 Vanilla planifolia HOM05D005338 ORTHO05D006550 1.6e-83 313.2 211 71.1
Zm00001eb236490 Zea mays HOM05D005338 ORTHO05D006550 3.6e-83 312.0 202 75.7
Os02g0193900 Oryza sativa ssp. japonica HOM05D005338 ORTHO05D006550 1.1e-82 310.5 203 73.9
Sopen03g021630 Solanum pennellii HOM05D005338 ORTHO05D006550 1.1e-82 310.5 215 74.0
Dinv36026 Davidia involucrata HOM05D005338 ORTHO05D006550 1.4e-82 310.1 216 75.9
Aa31LG7G14440 Aethionema arabicum HOM05D005338 ORTHO05D006550 1.5e-81 306.6 276 59.4
Sp4g01410 Schrenkiella parvula HOM05D005338 ORTHO05D006550 2.0e-81 306.2 217 71.9
CAN.G176.23 Capsicum annuum HOM05D005338 ORTHO05D006550 1.5e-73 280.0 185 76.2
SHI19279 Sapria himalayana HOM05D005338 ORTHO05D006550 7.6e-73 277.7 201 71.6
MELO3C010912.2 Cucumis melo HOM05D005338 ORTHO05D006550 1.3e-72 276.9 173 80.9
Lj4A782T79 Lonicera japonica HOM05D005338 ORTHO05D006550 2.2e-72 276.2 173 80.3
Rhsim06G0038600 Rhododendron simsii HOM05D005338 ORTHO05D006550 2.4e-71 272.7 185 77.3
Ca_02026_v3 Cicer arietinum L. HOM05D005338 ORTHO05D006550 1.2e-70 270.4 164 79.9
Mapoly0023s0045 Marchantia polymorpha HOM05D005338 ORTHO05D006550 1.1e-68 263.8 210 63.3
Pp3c14_750 Physcomitrium patens HOM05D005338 ORTHO05D006550 2.5e-68 262.7 219 58.0
RcHm_v2.0_Chr7g0238911 Rosa chinensis HOM05D005338 ORTHO05D006550 1.5e-65 253.4 175 80.6
SMO236G0045 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 2.0e-65 253.1 210 59.0
SalBow1G1231 Salvia bowleyana HOM05D005338 ORTHO05D006550 7.1e-63 244.6 152 84.9
TAR628G0003 Trochodendron aralioides HOM05D005338 ORTHO05D006550 1.6e-59 233.4 141 83.7
AagrBONN_evm.TU.Sc2ySwM_362.1720 Anthoceros agrestis HOM05D005338 ORTHO05D006550 2.8e-59 232.6 210 56.7
RcHm_v2.0_Chr5g0034471 Rosa chinensis HOM05D005338 ORTHO05D006550 7.6e-57 224.6 119 98.3
AUR62040070 Chenopodium quinoa HOM05D005338 ORTHO05D006550 7.2e-55 218.0 139 78.4
Sc15g0006680 Simmondsia chinensis HOM05D005338 ORTHO05D006550 1.2e-54 217.2 144 75.7
Solyc03g046360.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 2.1e-54 216.5 212 57.5
RcHm_v2.0_Chr7g0238871 Rosa chinensis HOM05D005338 ORTHO05D006550 7.9e-54 214.5 110 95.5
Hma1.2p1_0023F.1_g015170 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 1.1e-50 204.1 145 77.9
Sopen00g011030 Solanum pennellii HOM05D005338 ORTHO05D006550 2.5e-47 193.0 215 52.6
Sopen00g003620 Solanum pennellii HOM05D005338 ORTHO05D006550 1.3e-40 170.6 172 55.2
SMO236G0041 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 2.9e-40 169.5 162 52.5
RcHm_v2.0_Chr7g0238881 Rosa chinensis HOM05D005338 ORTHO05D006550 1.4e-37 160.6 90 93.3
Sopen03g021680 Solanum pennellii HOM05D005338 ORTHO05D006550 3.5e-33 146.0 217 46.1
TPR.G5804 Trifolium pratense HOM05D005338 ORTHO05D006550 6.1e-30 135.2 81 85.2
Atru.chr1.3597 Acer truncatum HOM05D005338 ORTHO05D006550 3.8e-24 115.9 80 78.8
BcaC04g23293 Brassica carinata HOM05D005338 ORTHO05D006550 2.9e-16 89.7 51 82.4
TAR628G1182 Trochodendron aralioides HOM05D005338 ORTHO05D006550 3.2e-15 86.3 46 84.8
Atru.chr12.488 Acer truncatum HOM05D005338 ORTHO05D006550 4.2e-15 85.9 45 88.9
SEGI_27973 Sequoiadendron giganteum HOM05D005338 ORTHO05D006550 1.2e-14 84.3 53 73.6
BraA09t41155Z Brassica rapa HOM05D005338 ORTHO05D006550 5.2e-13 79.0 65 64.6
MD08G1183200 Malus domestica HOM05D005338 ORTHO05D006550 1.7e-11 73.9 99 47.5
C08p40830 Brassica napus HOM05D005338 ORTHO05D006550 2.5e-07 60.1 34 85.3
BolC8t51648H Brassica oleracea HOM05D005338 ORTHO05D006550 7.3e-07 58.5 34 85.3


User provided reference genes

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