Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g28700 Fragaria vesca HOM05D005383 ORTHO05D006722 1.3e-157 560.1 371 100.0
FAN08G2879 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.9e-156 556.2 371 99.2
FAN13G0305 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.6e-152 543.1 394 86.8
RcHm_v2.0_Chr7g0220861 Rosa chinensis HOM05D005383 ORTHO05D006722 1.6e-139 500.0 373 91.4
Prupe.1G576100 Prunus persica HOM05D005383 ORTHO05D006722 7.7e-118 427.9 375 74.9
Ca_00052_v3 Cicer arietinum L. HOM05D005383 ORTHO05D006722 5.5e-116 421.8 374 80.7
MD08G1239600 Malus domestica HOM05D005383 ORTHO05D006722 5.2e-114 415.2 377 80.4
CiPaw.05G051100 Carya illinoinensis HOM05D005383 ORTHO05D006722 2.0e-110 403.3 375 80.5
QL02p099934 Quercus lobata HOM05D005383 ORTHO05D006722 1.0e-109 401.0 373 80.7
VMungo0251G3735 Vigna mungo HOM05D005383 ORTHO05D006722 1.6e-107 393.7 376 79.5
GSVIVG01023286001 Vitis vinifera HOM05D005383 ORTHO05D006722 8.8e-106 387.9 374 78.3
Thecc.02G025800 Theobroma cacao HOM05D005383 ORTHO05D006722 1.2e-105 387.5 375 79.7
Atru.chr6.733 Acer truncatum HOM05D005383 ORTHO05D006722 1.5e-105 387.1 373 78.0
COL.COLO4_17761 Corchorus olitorius HOM05D005383 ORTHO05D006722 2.0e-105 386.7 375 63.2
Ciclev10001534m.g Citrus clementina HOM05D005383 ORTHO05D006722 4.4e-105 385.6 375 78.1
Glyma.05G167900 Glycine max HOM05D005383 ORTHO05D006722 5.7e-105 385.2 375 78.7
Phvul.002G248200 Phaseolus vulgaris HOM05D005383 ORTHO05D006722 2.8e-104 382.9 376 78.2
Glyma.08G126300 Glycine max HOM05D005383 ORTHO05D006722 3.7e-104 382.5 376 76.9
CANSAT54G1323 Cannabis sativa HOM05D005383 ORTHO05D006722 2.4e-103 379.8 375 76.8
Psat1g221920 Pisum sativum HOM05D005383 ORTHO05D006722 2.4e-103 379.8 375 77.1
Gorai.002G214700 Gossypium raimondii HOM05D005383 ORTHO05D006722 3.1e-103 379.4 375 78.4
Gohir.D01G173100 Gossypium hirsutum HOM05D005383 ORTHO05D006722 7.0e-103 378.3 375 78.1
CiPaw.06G143700 Carya illinoinensis HOM05D005383 ORTHO05D006722 9.2e-103 377.9 374 69.0
Ciclev10003783m.g Citrus clementina HOM05D005383 ORTHO05D006722 9.2e-103 377.9 375 78.1
TPR.G2110 Trifolium pratense HOM05D005383 ORTHO05D006722 1.2e-102 377.5 377 76.9
Gohir.A01G182000 Gossypium hirsutum HOM05D005383 ORTHO05D006722 2.7e-102 376.3 375 78.1
Lj4g0022432 Lotus japonicus HOM05D005383 ORTHO05D006722 3.5e-102 375.9 373 77.5
Duzib248G0552 Durio zibethinus HOM05D005383 ORTHO05D006722 4.5e-102 375.6 375 62.9
arahy.Tifrunner.gnm1.ann1.UJ0XJV Arachis hypogaea HOM05D005383 ORTHO05D006722 1.3e-101 374.0 373 76.1
CSS0013900 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 1.3e-101 374.0 377 77.2
CSS0016011 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 1.3e-101 374.0 377 77.2
Cpa.g.sc161.1 Carica papaya HOM05D005383 ORTHO05D006722 5.0e-101 372.1 374 77.0
Sed0026787 Sechium edule HOM05D005383 ORTHO05D006722 1.9e-100 370.2 375 77.9
Haze_01820 Corylus avellana HOM05D005383 ORTHO05D006722 2.1e-99 366.7 402 62.4
Lalb_Chr07g0185851 Lupinus albus HOM05D005383 ORTHO05D006722 4.0e-98 362.5 384 76.3
Dinv01847 Davidia involucrata HOM05D005383 ORTHO05D006722 5.2e-98 362.1 366 77.6
Cc02_g22940 Coffea canephora HOM05D005383 ORTHO05D006722 2.0e-97 360.1 373 76.9
Eucgr.G00356 Eucalyptus grandis HOM05D005383 ORTHO05D006722 2.0e-97 360.1 375 74.7
Potri.003G010400 Populus trichocarpa HOM05D005383 ORTHO05D006722 4.9e-96 355.5 371 76.5
TWI23G0375 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 5.4e-95 352.1 375 75.7
Rhsim11G0125900 Rhododendron simsii HOM05D005383 ORTHO05D006722 4.6e-94 349.0 370 74.6
Potri.004G221700 Populus trichocarpa HOM05D005383 ORTHO05D006722 1.0e-93 347.8 373 74.5
TAR628G0519 Trochodendron aralioides HOM05D005383 ORTHO05D006722 3.0e-93 346.3 374 74.6
Lalb_Chr13g0295611 Lupinus albus HOM05D005383 ORTHO05D006722 3.3e-92 342.8 382 75.1
Nn5g27588 Nelumbo nucifera HOM05D005383 ORTHO05D006722 4.3e-92 342.4 373 73.5
MSTRG.5117 Avicennia marina HOM05D005383 ORTHO05D006722 8.0e-91 338.2 373 73.7
Sed0022153 Sechium edule HOM05D005383 ORTHO05D006722 6.8e-90 335.1 374 73.5
CsaV3_5G029920 Cucumis sativus L. HOM05D005383 ORTHO05D006722 2.6e-89 333.2 375 73.3
Manes.10G120600 Manihot esculenta HOM05D005383 ORTHO05D006722 7.5e-89 331.6 377 72.1
Nitab4.5_0009812g0010 Nicotiana tabacum HOM05D005383 ORTHO05D006722 3.7e-88 329.3 363 73.3
Solyc03g083310.4 Solanum lycopersicum HOM05D005383 ORTHO05D006722 3.7e-88 329.3 379 70.4
PGSC0003DMG400009082 Solanum tuberosum HOM05D005383 ORTHO05D006722 3.2e-87 326.2 368 70.4
PGR042G1418 Punica granatum HOM05D005383 ORTHO05D006722 5.4e-87 325.5 386 67.6
MELO3C011837.2 Cucumis melo HOM05D005383 ORTHO05D006722 9.2e-87 324.7 375 72.5
Hma1.2p1_1108F.1_g257860 Hydrangea macrophylla HOM05D005383 ORTHO05D006722 1.6e-86 323.9 376 71.5
CAN.G968.1 Capsicum annuum HOM05D005383 ORTHO05D006722 1.0e-85 321.2 378 70.6
DCAR_025351 Daucus carota HOM05D005383 ORTHO05D006722 1.0e-85 321.2 343 72.9
vmacro01730 Vaccinium macrocarpon HOM05D005383 ORTHO05D006722 1.3e-85 320.9 380 70.8
EL10Ac2g02705 Beta vulgaris HOM05D005383 ORTHO05D006722 6.6e-85 318.5 375 71.7
Nitab4.5_0000548g0200 Nicotiana tabacum HOM05D005383 ORTHO05D006722 8.6e-85 318.2 373 71.3
Hund12945 Selenicereus undatus HOM05D005383 ORTHO05D006722 1.5e-84 317.4 375 62.1
THA.LOC104801420 Tarenaya hassleriana HOM05D005383 ORTHO05D006722 1.5e-84 317.4 380 69.7
TAR381G0956 Trochodendron aralioides HOM05D005383 ORTHO05D006722 1.2e-83 314.3 375 70.7
arahy.Tifrunner.gnm1.ann1.I6AGPX Arachis hypogaea HOM05D005383 ORTHO05D006722 2.1e-83 313.5 348 76.7
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 4.7e-83 312.4 333 74.8
Ciclev10003892m.g Citrus clementina HOM05D005383 ORTHO05D006722 3.1e-82 309.7 334 68.0
TWI59G0781 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 1.2e-81 307.8 370 70.8
BcaC04g20728 Brassica carinata HOM05D005383 ORTHO05D006722 1.5e-81 307.4 372 68.8
BolC9t56882H Brassica oleracea HOM05D005383 ORTHO05D006722 1.5e-81 307.4 372 68.8
BraSC35t46002Z Brassica rapa HOM05D005383 ORTHO05D006722 2.6e-81 306.6 372 68.5
arahy.Tifrunner.gnm1.ann1.E4SRBI Arachis hypogaea HOM05D005383 ORTHO05D006722 4.4e-81 305.8 348 75.3
Sopen03g023060 Solanum pennellii HOM05D005383 ORTHO05D006722 9.8e-81 304.7 381 66.9
A10p07980 Brassica napus HOM05D005383 ORTHO05D006722 2.9e-80 303.1 372 68.0
Lsat_1_v5_gn_4_6600 Lactuca sativa HOM05D005383 ORTHO05D006722 4.1e-79 299.3 382 67.8
Sabra03G0005300 Salix brachista HOM05D005383 ORTHO05D006722 4.1e-79 299.3 489 41.9
Lj9A301T38 Lonicera japonica HOM05D005383 ORTHO05D006722 1.2e-78 297.7 356 72.5
Migut.B00804 Erythranthe guttata HOM05D005383 ORTHO05D006722 4.6e-78 295.8 357 69.7
Thhalv10028723m.g Eutrema salsugineum HOM05D005383 ORTHO05D006722 1.0e-77 294.7 382 67.3
SGA_v2.0_scaffold42G15921 Striga asiatica HOM05D005383 ORTHO05D006722 1.9e-76 290.4 388 66.2
HanXRQChr04g0103661 Helianthus annuus HOM05D005383 ORTHO05D006722 6.2e-75 285.4 383 68.9
Sp6g13330 Schrenkiella parvula HOM05D005383 ORTHO05D006722 8.1e-75 285.0 363 67.2
C09p39820 Brassica napus HOM05D005383 ORTHO05D006722 1.1e-74 284.6 369 67.5
PSO063G2254 Papaver somniferum HOM05D005383 ORTHO05D006722 1.4e-74 284.3 367 67.8
Aa31LG3G14030 Aethionema arabicum HOM05D005383 ORTHO05D006722 3.1e-74 283.1 381 66.4
ECA233G1887 Erigeron canadensis HOM05D005383 ORTHO05D006722 4.9e-72 275.8 362 71.3
AL6G41240 Arabidopsis lyrata HOM05D005383 ORTHO05D006722 6.4e-72 275.4 388 64.9
Carub.0006s2631 Capsella rubella HOM05D005383 ORTHO05D006722 1.1e-71 274.6 382 65.7
BcaB08g35467 Brassica carinata HOM05D005383 ORTHO05D006722 1.9e-71 273.9 374 64.7
AT4G06634 Arabidopsis thaliana HOM05D005383 ORTHO05D006722 2.4e-71 273.5 384 65.6
C03p19190 Brassica napus HOM05D005383 ORTHO05D006722 2.4e-71 273.5 378 64.8
PSO017G2626 Papaver somniferum HOM05D005383 ORTHO05D006722 2.4e-71 273.5 367 66.8
A03p16300 Brassica napus HOM05D005383 ORTHO05D006722 4.1e-71 272.7 379 64.4
HanXRQChr08g0209021 Helianthus annuus HOM05D005383 ORTHO05D006722 6.0e-70 268.9 344 69.2
CDE02G2650 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 1.0e-69 268.1 378 66.4
CDE08G1140 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 6.6e-69 265.4 378 65.9
BolC3t14307H Brassica oleracea HOM05D005383 ORTHO05D006722 1.1e-68 264.6 392 53.8
unitig_699.g19853 Utricularia gibba HOM05D005383 ORTHO05D006722 1.5e-68 264.2 380 44.2
BraA03t10921Z Brassica rapa HOM05D005383 ORTHO05D006722 1.2e-67 261.2 391 53.2
CARHR260070 Cardamine hirsuta HOM05D005383 ORTHO05D006722 1.6e-67 260.8 385 64.9
Actinidia00189 Actinidia chinensis HOM05D005383 ORTHO05D006722 3.1e-66 256.5 279 78.5
Oeu036675.1 Olea europaea HOM05D005383 ORTHO05D006722 3.4e-65 253.1 320 71.2
Aqoxy6G00141 Aquilegia oxysepala HOM05D005383 ORTHO05D006722 4.9e-64 249.2 333 67.9
BcaC01g06099 Brassica carinata HOM05D005383 ORTHO05D006722 5.4e-63 245.7 374 62.3
ATR0071G030 Amborella trichopoda HOM05D005383 ORTHO05D006722 9.3e-63 245.0 327 72.2
MSTRG.16504 Avicennia marina HOM05D005383 ORTHO05D006722 3.5e-62 243.0 320 72.8
BcaC01g06075 Brassica carinata HOM05D005383 ORTHO05D006722 6.0e-62 242.3 376 62.2
Sc07g0004970 Simmondsia chinensis HOM05D005383 ORTHO05D006722 1.1e-60 238.0 328 71.0
HPP92_009272 Vanilla planifolia HOM05D005383 ORTHO05D006722 8.1e-59 231.9 360 63.6
FAN04G2588 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.2e-57 228.0 132 97.7
HPP92_013744 Vanilla planifolia HOM05D006763 ORTHO05D008659 2.4e-55 220.3 309 67.0
Lsat_1_v5_gn_8_160061 Lactuca sativa HOM05D005383 ORTHO05D006722 2.1e-54 217.2 270 72.2
MD15G1431100 Malus domestica HOM05D005383 ORTHO05D006722 6.0e-54 215.7 307 66.1
unitig_747.g21262 Utricularia gibba HOM05D005383 ORTHO05D006722 3.3e-52 209.9 368 54.1
Sabra01G0167800 Salix brachista HOM05D005383 ORTHO05D006722 5.8e-49 199.1 183 60.7
AUR62041111 Chenopodium quinoa HOM05D005383 ORTHO05D006722 4.9e-48 196.1 174 64.4
Os05g0106000 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 4.2e-47 193.0 383 55.4
Peaxi162Scf03254g00012 Petunia axillaris HOM05D005383 ORTHO05D006722 1.2e-46 191.4 167 63.5
Os02g0551900 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 6.0e-46 189.1 359 58.5
Actinidia39015 Actinidia chinensis HOM05D005383 ORTHO05D006722 2.5e-44 183.7 132 82.6
Zm00001eb267130 Zea mays HOM05D005383 ORTHO05D006722 3.1e-42 176.8 371 53.6
CAN.G982.21 Capsicum annuum HOM05D005383 ORTHO05D006722 1.9e-39 167.5 173 57.8
ClCG11G013400 Citrullus lanatus HOM05D005383 ORTHO05D006722 1.6e-38 164.5 132 74.2
Zm00001eb243510 Zea mays HOM05D005383 ORTHO05D006722 3.0e-37 160.2 297 59.6
Zm00001eb181970 Zea mays HOM05D005383 ORTHO05D006722 8.7e-37 158.7 296 59.5
FAN18G2475 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.9e-36 157.5 132 75.8
SEGI_13518 Sequoiadendron giganteum HOM05D005383 ORTHO05D006722 5.7e-28 129.4 115 68.7
Mapoly0095s0037 Marchantia polymorpha HOM05D005383 ORTHO05D006722 1.5e-25 121.3 353 51.6
Peaxi162Scf00003g03953 Petunia axillaris HOM05D000011 ORTHO05D011267 1.5e-25 121.3 154 48.1
AagrBONN_evm.TU.Sc2ySwM_228.1706 Anthoceros agrestis HOM05D005383 ORTHO05D006722 1.7e-24 117.9 244 63.5
ATR0071G005 Amborella trichopoda HOM05D005383 ORTHO05D006722 1.6e-22 111.3 103 59.2
CBR_g52462 Chara braunii HOM05D005383 ORTHO05D006722 1.5e-20 104.8 248 58.9
Pp3c7_7980 Physcomitrium patens HOM05D005383 ORTHO05D006722 1.3e-19 101.7 410 45.9
SMO347G0081 Selaginella moellendorffii HOM05D005383 ORTHO05D006722 2.9e-16 90.5 229 54.6
arahy.Tifrunner.gnm1.ann1.VA1YNF Arachis hypogaea HOM05D005383 ORTHO05D006722 3.2e-15 87.0 84 73.8
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 2.6e-12 77.4 58 63.8
arahy.Tifrunner.gnm1.ann1.0L29ML Arachis hypogaea HOM05D005383 ORTHO05D006722 3.3e-12 77.0 55 67.3
arahy.Tifrunner.gnm1.ann1.XX0GIY Arachis hypogaea HOM05D005383 ORTHO05D006722 1.7e-11 74.7 55 65.5


User provided reference genes

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