Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g27610 Fragaria vesca HOM05D005319 ORTHO05D006632 0.0e+00 1534.6 800 100.0
FAN18G0588 Fragaria x ananassa HOM05D005319 ORTHO05D006632 0.0e+00 1466.4 818 95.0
FAN13G2205 Fragaria x ananassa HOM05D005319 ORTHO05D006632 0.0e+00 1420.2 820 92.1
FAN04G2290 Fragaria x ananassa HOM05D005319 ORTHO05D006632 0.0e+00 1359.4 812 90.5
RcHm_v2.0_Chr7g0219031 Rosa chinensis HOM05D005319 ORTHO05D006632 0.0e+00 1224.2 804 82.5
Prupe.1G586100 Prunus persica HOM05D005319 ORTHO05D006632 2.1e-309 1065.4 830 69.9
MD08G1248800 Malus domestica HOM05D005319 ORTHO05D006632 4.4e-304 1047.7 833 68.8
MD15G1443600 Malus domestica HOM05D005319 ORTHO05D006632 2.3e-300 1035.4 833 68.4
TAR628G0438 Trochodendron aralioides HOM05D005319 ORTHO05D006632 2.6e-272 942.2 847 59.6
Hma1.2p1_0052F.1_g030050 Hydrangea macrophylla HOM05D005319 ORTHO05D006632 5.5e-270 934.5 815 61.2
Cfa004432 Carpinus fangiana HOM05D005319 ORTHO05D006632 7.1e-270 934.1 814 63.4
Manes.07G031200 Manihot esculenta HOM05D005319 ORTHO05D006632 9.3e-270 933.7 779 63.0
QL02p103594 Quercus lobata HOM05D005319 ORTHO05D006632 3.9e-268 928.3 824 63.7
CANSAT01G0698 Cannabis sativa HOM05D005319 ORTHO05D006632 2.0e-264 916.0 847 60.9
Potri.004G229732 Populus trichocarpa HOM05D005319 ORTHO05D006632 3.0e-260 902.1 792 59.8
Actinidia26200 Actinidia chinensis HOM05D005319 ORTHO05D006632 2.8e-258 895.6 861 58.1
CSS0036760 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 2.4e-257 892.5 860 57.0
Haze_09972 Corylus avellana HOM05D005319 ORTHO05D006632 9.1e-257 890.6 817 60.6
Medtr8g015930 Medicago truncatula HOM05D005319 ORTHO05D006632 3.4e-256 888.6 788 59.3
Lj5g0014697 Lotus japonicus HOM05D005319 ORTHO05D006632 3.2e-254 882.1 776 59.0
Sed0027556 Sechium edule HOM05D005319 ORTHO05D006632 9.4e-254 880.6 806 58.2
CSS0030211 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 1.2e-253 880.2 843 57.4
vmacro19823 Vaccinium macrocarpon HOM05D005319 ORTHO05D006632 1.6e-253 879.8 833 57.1
Glyma.12G164200 Glycine max HOM05D005319 ORTHO05D006632 2.7e-253 879.0 791 58.5
Duzib192G0868 Durio zibethinus HOM05D005319 ORTHO05D006632 7.9e-253 877.5 824 59.1
Atru.chr6.211 Acer truncatum HOM05D005319 ORTHO05D006632 1.4e-252 876.7 839 56.9
Gorai.009G114100 Gossypium raimondii HOM05D005319 ORTHO05D006632 1.4e-252 876.7 785 61.7
Gohir.D05G110000 Gossypium hirsutum HOM05D005319 ORTHO05D006632 1.8e-252 876.3 802 60.6
Thecc.06G020300 Theobroma cacao HOM05D005319 ORTHO05D006632 1.8e-252 876.3 789 60.2
Gohir.A05G109700 Gossypium hirsutum HOM05D005319 ORTHO05D006632 3.0e-252 875.5 785 61.5
Ciclev10000238m.g Citrus clementina HOM05D005319 ORTHO05D006632 6.7e-252 874.4 869 55.8
TPR.G5958 Trifolium pratense HOM05D005319 ORTHO05D006632 1.1e-251 873.6 791 58.7
VMungo1127G0564 Vigna mungo HOM05D005319 ORTHO05D006632 2.6e-251 872.5 844 55.3
Rhsim05G0118000 Rhododendron simsii HOM05D005319 ORTHO05D006632 3.3e-251 872.1 807 58.1
Psat1g223960 Pisum sativum HOM05D005319 ORTHO05D006632 5.7e-251 871.3 814 57.6
CsaV3_5G027480 Cucumis sativus L. HOM05D005319 ORTHO05D006632 2.2e-250 869.4 812 56.7
GSVIVG01023136001 Vitis vinifera HOM05D005319 ORTHO05D006632 1.4e-249 866.7 806 60.7
Glyma.16G000500 Glycine max HOM05D005319 ORTHO05D006632 5.3e-249 864.8 803 56.9
arahy.Tifrunner.gnm1.ann1.2TW5YI Arachis hypogaea HOM05D005319 ORTHO05D006632 2.9e-247 859.0 825 56.8
MSTRG.16462 Avicennia marina HOM05D005319 ORTHO05D006632 1.1e-246 857.1 848 55.8
TWI59G0928 Tripterygium wilfordii HOM05D005319 ORTHO05D006632 1.1e-246 857.1 851 54.3
Gorai.011G090800 Gossypium raimondii HOM05D005319 ORTHO05D006632 2.5e-246 855.9 807 59.0
Phvul.006G221600 Phaseolus vulgaris HOM05D005319 ORTHO05D006632 2.5e-246 855.9 801 56.2
CAN.G855.58 Capsicum annuum HOM05D005319 ORTHO05D006632 1.0e-244 850.5 854 57.4
Sc12g0006940 Simmondsia chinensis HOM05D005319 ORTHO05D006632 3.9e-244 848.6 835 56.9
Lj5A285G49 Lonicera japonica HOM05D005319 ORTHO05D006632 5.2e-244 848.2 826 55.9
Gohir.D10G083500 Gossypium hirsutum HOM05D005319 ORTHO05D006632 6.7e-244 847.8 810 58.3
Lalb_Chr18g0061161 Lupinus albus HOM05D005319 ORTHO05D006632 4.8e-242 841.6 773 58.3
Solyc01g102970.3 Solanum lycopersicum HOM05D005319 ORTHO05D006632 1.1e-241 840.5 855 56.5
ClCG11G000090 Citrullus lanatus HOM05D005319 ORTHO05D006632 1.8e-241 839.7 813 56.7
MELO3C022920.2 Cucumis melo HOM05D005319 ORTHO05D006632 2.4e-241 839.3 751 59.0
Nitab4.5_0003247g0020 Nicotiana tabacum HOM05D005319 ORTHO05D006632 1.2e-240 837.0 853 56.7
Sopen01g045380 Solanum pennellii HOM05D005319 ORTHO05D006632 7.7e-240 834.3 855 55.8
PGR142G1786 Punica granatum HOM05D005319 ORTHO05D006632 2.2e-239 832.8 793 55.7
Cc02_g23690 Coffea canephora HOM05D005319 ORTHO05D006632 7.2e-238 827.8 848 56.1
Prupe.2G119000 Prunus persica HOM05D005319 ORTHO05D006632 9.4e-238 827.4 817 58.6
THA.LOC104806623 Tarenaya hassleriana HOM05D005319 ORTHO05D006632 4.7e-237 825.1 846 55.1
HanXRQChr03g0090101 Helianthus annuus HOM05D005319 ORTHO05D006632 4.4e-235 818.5 791 59.0
Nn4g24765 Nelumbo nucifera HOM05D005319 ORTHO05D006632 1.7e-234 816.6 817 54.3
unitig_8.g2963 Utricularia gibba HOM05D005319 ORTHO05D006632 2.7e-232 809.3 776 57.9
ECA240G4281 Erigeron canadensis HOM05D005319 ORTHO05D006632 7.7e-232 807.7 827 55.4
Thhalv10024416m.g Eutrema salsugineum HOM05D005319 ORTHO05D006632 1.7e-231 806.6 807 56.6
Nitab4.5_0005164g0040 Nicotiana tabacum HOM05D005319 ORTHO05D006632 1.7e-231 806.6 836 56.0
Nn5g27146 Nelumbo nucifera HOM05D005319 ORTHO05D006632 2.5e-230 802.7 812 54.3
Peaxi162Scf00011g02012 Petunia axillaris HOM05D005319 ORTHO05D006632 5.5e-230 801.6 855 53.5
COL.COLO4_31114 Corchorus olitorius HOM05D005319 ORTHO05D006632 8.0e-229 797.7 791 56.6
SGA_v2.0_scaffold254G45232 Striga asiatica HOM05D005319 ORTHO05D006632 2.3e-228 796.2 761 55.7
Sp7g22260 Schrenkiella parvula HOM05D005319 ORTHO05D006632 4.0e-228 795.4 817 55.4
Sabra01G0174900 Salix brachista HOM05D005319 ORTHO05D006632 5.2e-228 795.0 787 54.9
PSO017G2844 Papaver somniferum HOM05D005319 ORTHO05D006632 6.8e-228 794.7 800 54.6
PSO170G3892 Papaver somniferum HOM05D005319 ORTHO05D006632 2.8e-226 789.3 799 54.2
C01p19580 Brassica napus HOM05D005319 ORTHO05D006632 1.1e-222 777.3 816 54.2
BcaC09g50887 Brassica carinata HOM05D005319 ORTHO05D006632 2.8e-221 772.7 814 53.3
AL7G28980 Arabidopsis lyrata HOM05D005319 ORTHO05D006632 2.0e-219 766.5 828 53.4
BolC1t01883H Brassica oleracea HOM05D005319 ORTHO05D006632 2.0e-219 766.5 816 53.6
Carub.0007s1678 Capsella rubella HOM05D005319 ORTHO05D006632 7.5e-219 764.6 823 53.6
Eucgr.I02798 Eucalyptus grandis HOM05D005319 ORTHO05D006632 3.7e-218 762.3 656 59.1
Lsat_1_v5_gn_9_125320 Lactuca sativa HOM05D005319 ORTHO05D006632 3.7e-218 762.3 780 56.4
CARHR231700 Cardamine hirsuta HOM05D005319 ORTHO05D006632 6.3e-218 761.5 820 53.2
AT4G24270 Arabidopsis thaliana HOM05D005319 ORTHO05D006632 8.3e-218 761.1 817 53.7
BraA01t01501Z Brassica rapa HOM05D005319 ORTHO05D006632 7.0e-217 758.1 823 53.5
AUR62041124 Chenopodium quinoa HOM05D005319 ORTHO05D006632 1.0e-215 754.2 880 50.8
BcaNung01135 Brassica carinata HOM05D005319 ORTHO05D006632 5.0e-215 751.9 817 52.5
A01p15600 Brassica napus HOM05D005319 ORTHO05D006632 1.9e-214 750.0 825 52.6
Aqoxy6G00019 Aquilegia oxysepala HOM05D005319 ORTHO05D006632 4.3e-214 748.8 807 49.9
AUR62042963 Chenopodium quinoa HOM05D005319 ORTHO05D006632 1.6e-213 746.9 840 52.4
Aa31LG7G10320 Aethionema arabicum HOM05D005319 ORTHO05D006632 1.0e-212 744.2 840 51.5
CDE07G1780 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 8.9e-204 714.5 827 47.4
Cpa.g.sc173.4 Carica papaya HOM05D005319 ORTHO05D006632 2.0e-203 713.4 758 55.1
HPP92_001202 Vanilla planifolia HOM05D005319 ORTHO05D006632 1.0e-199 701.0 786 49.2
Dinv29683 Davidia involucrata HOM05D005319 ORTHO05D006632 3.0e-199 699.5 716 53.4
CDE04G1013 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 6.8e-196 688.3 744 51.1
Os08g0113200 Oryza sativa ssp. japonica HOM05D005319 ORTHO05D006632 1.3e-194 684.1 803 49.1
Migut.B00712 Erythranthe guttata HOM05D005319 ORTHO05D006632 1.7e-191 673.7 557 62.8
Zm00001eb260720 Zea mays HOM05D005319 ORTHO05D006632 3.6e-189 666.0 792 46.7
DCAR_003273 Daucus carota HOM05D005319 ORTHO05D006632 5.6e-182 642.1 840 46.5
CiPaw.05G159300 Carya illinoinensis HOM05D005319 ORTHO05D006632 4.0e-180 636.0 519 61.8
Gohir.A10G157900 Gossypium hirsutum HOM05D005319 ORTHO05D006632 1.7e-175 620.5 612 58.7
Ca_00016_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 4.2e-161 572.8 532 59.0
AagrBONN_evm.TU.Sc2ySwM_228.2043 Anthoceros agrestis HOM05D005319 ORTHO05D006632 1.9e-158 563.9 846 41.6
ATR1089G095 Amborella trichopoda HOM05D005319 ORTHO05D006632 3.3e-158 563.1 733 46.5
Mapoly0013s0201 Marchantia polymorpha HOM05D005319 ORTHO05D006632 4.5e-155 552.7 804 40.5
Pp3c2_22040 Physcomitrium patens HOM05D005319 ORTHO05D006632 2.2e-154 550.4 828 40.0
SHI04989 Sapria himalayana HOM05D005319 ORTHO05D006632 2.5e-153 547.0 582 52.6
SMO367G0583 Selaginella moellendorffii HOM05D005319 ORTHO05D006632 2.2e-146 523.9 785 40.3
EL10As26g24243 Beta vulgaris HOM05D005319 ORTHO05D006632 1.2e-128 464.9 421 56.3
CBR_g44339 Chara braunii HOM05D005319 ORTHO05D006632 1.1e-121 441.8 784 36.2
MBI03_g21086_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 7.2e-121 439.1 423 56.0
Actinidia01642 Actinidia chinensis HOM05D005319 ORTHO05D006632 1.6e-120 438.0 494 52.0
ECA247G0718 Erigeron canadensis HOM05D005319 ORTHO05D006632 6.1e-120 436.0 457 55.1
Oeu043602.1 Olea europaea HOM05D005319 ORTHO05D006632 2.1e-104 384.4 475 50.7
PGSC0003DMG400020717 Solanum tuberosum HOM05D005319 ORTHO05D006632 1.6e-96 358.2 391 53.7
MBI03_g34263_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 1.8e-95 354.8 424 51.2
Oeu043603.1 Olea europaea HOM05D005319 ORTHO05D006632 2.0e-86 324.7 478 45.6
EL10As26g24244 Beta vulgaris HOM05D005319 ORTHO05D006632 1.6e-83 315.1 396 49.5
Cre12.g546700 Chlamydomonas reinhardtii HOM05D005319 ORTHO05D006632 4.3e-73 280.4 528 33.0
C01p22600 Brassica napus HOM05D005319 ORTHO05D006632 6.2e-64 250.0 229 54.1
Hund15346 Selenicereus undatus HOM05D005319 ORTHO05D006632 6.0e-51 206.8 353 42.5
Ca_28127_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 3.3e-49 201.1 205 51.7
CiPaw.05G159200 Carya illinoinensis HOM05D005319 ORTHO05D006632 2.4e-47 194.9 196 56.1
PRCOL_00002327 Prasinoderma coloniale HOM05D005319 ORTHO05D006632 1.0e-34 152.9 481 24.9
Ciclev10004084m.g Citrus clementina HOM05D005319 ORTHO05D006632 3.6e-27 127.9 80 73.8
MCO03G034 Micromonas commoda HOM05D005319 ORTHO05D006632 1.5e-25 122.5 238 34.0
SHI04988 Sapria himalayana HOM05D005319 ORTHO05D006632 2.2e-24 118.6 107 57.9
Lj1A1166G72 Lonicera japonica HOM05D005319 ORTHO05D006632 6.3e-24 117.1 187 40.1
SEGI_30405 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 2.4e-23 115.2 93 57.0
SHI04990 Sapria himalayana HOM05D005319 ORTHO05D006632 3.4e-22 111.3 137 48.9
BcaC09g50640 Brassica carinata HOM05D005319 ORTHO05D006632 1.6e-19 102.4 208 32.7
Lj6A128G22 Lonicera japonica HOM05D005319 ORTHO05D006632 1.3e-16 92.8 163 39.9
SEGI_30773 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 2.6e-14 85.1 133 36.8
Lj1A1166G73 Lonicera japonica HOM05D005319 ORTHO05D006632 4.5e-14 84.3 336 30.1
FvH4_5g37876 Fragaria vesca HOM05D003496 ORTHO05D003909 1.5e-12 79.3 43 93.0
FAN08G2337 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.5e-12 79.3 45 88.9
C01p22550 Brassica napus HOM05D005319 ORTHO05D006632 2.5e-12 78.6 104 48.1
BolC1t02188H Brassica oleracea HOM05D005319 ORTHO05D006632 2.5e-12 78.6 104 48.1
Oeu016642.3 Olea europaea HOM05D001586 ORTHO05D001543 1.4e-10 72.8 66 54.5
EL10Ac9g22556 Beta vulgaris HOM05D005319 ORTHO05D006632 1.8e-10 72.4 62 62.9
EL10Ac6g13976 Beta vulgaris HOM05D005319 ORTHO05D006632 5.2e-10 70.9 75 56.0
Cre17.g733208 Chlamydomonas reinhardtii HOM05D002097 ORTHO05D002248 2.0e-09 68.9 79 49.4
C01p19550 Brassica napus HOM05D005319 ORTHO05D006632 1.8e-07 62.4 115 42.6
MCO03G286 Micromonas commoda HOM05D005319 ORTHO05D006632 2.4e-07 62.0 70 41.4
A03p55220 Brassica napus HOM05D005319 ORTHO05D041784 3.1e-07 61.6 47 66.0
BraA03t14581Z Brassica rapa HOM05D005319 ORTHO05D041784 3.1e-07 61.6 47 66.0
BcaNung06598 Brassica carinata HOM05D005319 ORTHO05D010222 4.1e-07 61.2 41 73.2
Cre04.g213905 Chlamydomonas reinhardtii HOM05D002097 ORTHO05D002248 4.1e-07 61.2 115 31.3
Cfa024121 Carpinus fangiana HOM05D000285 ORTHO05D001253 5.3e-07 60.8 130 32.3
ATR0584G217 Amborella trichopoda HOM05D002097 ORTHO05D002248 1.2e-06 59.7 106 29.2
MCO14G511 Micromonas commoda HOM05D002097 ORTHO05D002248 1.2e-06 59.7 89 33.7
FAN19G0610 Fragaria x ananassa HOM05D002097 ORTHO05D002248 1.6e-06 59.3 104 28.8
Lj6g0017604 Lotus japonicus HOM05D000285 ORTHO05D000241 1.6e-06 59.3 84 36.9
SMO172G0032 Selaginella moellendorffii HOM05D002097 ORTHO05D002248 1.6e-06 59.3 90 32.2
Atru.chr5.3382 Acer truncatum HOM05D002097 ORTHO05D002248 2.0e-06 58.9 98 28.6
Nitab4.5_0000255g0260 Nicotiana tabacum HOM05D000285 ORTHO05D000241 2.0e-06 58.9 87 36.8
Nitab4.5_0005918g0040 Nicotiana tabacum HOM05D000285 ORTHO05D000241 2.0e-06 58.9 87 36.8
CDE04G1520 Ceratophyllum demersum HOM05D000285 ORTHO05D000241 2.7e-06 58.5 107 33.6
Dinv02711 Davidia involucrata HOM05D002097 ORTHO05D002248 3.5e-06 58.2 107 29.9
FvH4_1g23920 Fragaria vesca HOM05D002097 ORTHO05D002248 3.5e-06 58.2 108 28.7
FAN23G2605 Fragaria x ananassa HOM05D002097 ORTHO05D002248 3.5e-06 58.2 108 28.7
FAN26G0991 Fragaria x ananassa HOM05D002097 ORTHO05D002248 3.5e-06 58.2 108 28.7
Sabra10G0175500 Salix brachista HOM05D003377 ORTHO05D004080 3.5e-06 58.2 74 40.5
Hund19617 Selenicereus undatus HOM05D002097 ORTHO05D002248 3.5e-06 58.2 106 28.3
Cc07_g16800 Coffea canephora HOM05D002097 ORTHO05D002248 4.5e-06 57.8 96 30.2
Duzib187G1445 Durio zibethinus HOM05D002097 ORTHO05D002248 4.5e-06 57.8 107 29.9
FAN28G1528 Fragaria x ananassa HOM05D002097 ORTHO05D002248 4.5e-06 57.8 124 29.0
Aa31LG2G15370 Aethionema arabicum HOM05D002097 ORTHO05D002248 5.9e-06 57.4 92 30.4
Ah.02g123820 Amaranthus hybridus HOM05D002097 ORTHO05D002248 5.9e-06 57.4 124 27.4
Ciclev10027985m.g Citrus clementina HOM05D002097 ORTHO05D002248 5.9e-06 57.4 96 31.2
Lalb_Chr08g0238731 Lupinus albus HOM05D002097 ORTHO05D002248 5.9e-06 57.4 96 31.2
Nn1g06040 Nelumbo nucifera HOM05D002097 ORTHO05D002248 5.9e-06 57.4 104 28.8
PRCOL_00005318 Prasinoderma coloniale HOM05D002097 ORTHO05D002248 5.9e-06 57.4 82 35.4
THA.LOC104818470 Tarenaya hassleriana HOM05D002097 ORTHO05D002248 5.9e-06 57.4 104 28.8
Thecc.01G118000 Theobroma cacao HOM05D002097 ORTHO05D002248 5.9e-06 57.4 107 29.9
arahy.Tifrunner.gnm1.ann1.68MNY7 Arachis hypogaea HOM05D002097 ORTHO05D002248 7.7e-06 57.0 108 28.7
arahy.Tifrunner.gnm1.ann1.DVV8A4 Arachis hypogaea HOM05D002097 ORTHO05D002248 7.7e-06 57.0 108 28.7
CAN.G341.13 Capsicum annuum HOM05D002097 ORTHO05D002248 7.7e-06 57.0 128 28.9
CiPaw.05G084300 Carya illinoinensis HOM05D002097 ORTHO05D002248 7.7e-06 57.0 98 31.6
Nitab4.5_0001295g0200 Nicotiana tabacum HOM05D000285 ORTHO05D000241 7.7e-06 57.0 88 37.5
Nitab4.5_0004377g0050 Nicotiana tabacum HOM05D002097 ORTHO05D002248 7.7e-06 57.0 128 28.1
Psat0s7345g0040 Pisum sativum HOM05D003377 ORTHO05D004080 7.7e-06 57.0 72 43.1
Potri.005G148100 Populus trichocarpa HOM05D002097 ORTHO05D002248 7.7e-06 57.0 106 28.3
RcHm_v2.0_Chr2g0119921 Rosa chinensis HOM05D002097 ORTHO05D002248 7.7e-06 57.0 106 29.2
Sabra05G0117600 Salix brachista HOM05D002097 ORTHO05D002248 7.7e-06 57.0 106 28.3
Zm00001eb403170 Zea mays HOM05D002097 ORTHO05D002248 7.7e-06 57.0 109 27.5


User provided reference genes

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