Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g18480 Fragaria vesca HOM05D004494 ORTHO05D005493 8.3e-66 253.4 119 100.0
RcHm_v2.0_Chr7g0177031 Rosa chinensis HOM05D004494 ORTHO05D005493 1.6e-24 116.3 54 98.1
Prupe.4G246000 Prunus persica HOM05D004494 ORTHO05D005493 8.7e-23 110.5 54 96.3
Prupe.5G244400 Prunus persica HOM05D004494 ORTHO05D005493 8.7e-23 110.5 54 96.3
arahy.Tifrunner.gnm1.ann1.UPEY1W Arachis hypogaea HOM05D004494 ORTHO05D005493 7.4e-22 107.5 65 81.5
FAN08G0913 Fragaria x ananassa HOM05D004494 ORTHO05D005493 7.4e-22 107.5 47 100.0
FAN18G1159 Fragaria x ananassa HOM05D004494 ORTHO05D005493 7.4e-22 107.5 47 100.0
MD12G1077100 Malus domestica HOM05D004494 ORTHO05D005493 5.3e-20 101.3 54 88.9
MD14G1071000 Malus domestica HOM05D004494 ORTHO05D005493 5.3e-20 101.3 54 88.9
CANSAT11G2181 Cannabis sativa HOM05D004494 ORTHO05D005493 2.0e-19 99.4 54 88.9
CiPaw.16G074500 Carya illinoinensis HOM05D004494 ORTHO05D005493 2.6e-19 99.0 54 88.9
Ciclev10017429m.g Citrus clementina HOM05D004494 ORTHO05D005493 2.6e-19 99.0 54 88.9
Glyma.09G164200 Glycine max HOM05D004494 ORTHO05D005493 2.6e-19 99.0 54 88.9
Glyma.16G212700 Glycine max HOM05D004494 ORTHO05D005493 2.6e-19 99.0 54 88.9
Lj2g0023891 Lotus japonicus HOM05D004494 ORTHO05D005493 2.6e-19 99.0 54 88.9
Lalb_Chr08g0237121 Lupinus albus HOM05D004494 ORTHO05D005493 2.6e-19 99.0 54 88.9
Manes.10G081901 Manihot esculenta HOM05D004494 ORTHO05D005493 2.6e-19 99.0 54 88.9
Phvul.004G138700 Phaseolus vulgaris HOM05D004494 ORTHO05D005493 2.6e-19 99.0 54 88.9
Potri.011G144800 Populus trichocarpa HOM05D004494 ORTHO05D005493 2.6e-19 99.0 54 88.9
Sed0027035 Sechium edule HOM05D004494 ORTHO05D005493 3.4e-19 98.6 54 87.0
PSO673G0024 Papaver somniferum HOM05D004494 ORTHO05D005493 5.9e-19 97.8 54 87.0
Sed0010347 Sechium edule HOM05D004494 ORTHO05D005493 5.9e-19 97.8 54 87.0
EL10Ac5g11725 Beta vulgaris HOM05D004494 ORTHO05D005493 1.0e-18 97.1 54 87.0
CSS0001708 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 1.0e-18 97.1 54 87.0
CSS0021691 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 1.0e-18 97.1 54 87.0
CSS0025595 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 1.0e-18 97.1 54 87.0
CSS0034931 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 1.0e-18 97.1 54 87.0
Hma1.2p1_0854F.1_g228840 Hydrangea macrophylla HOM05D004494 ORTHO05D005493 1.0e-18 97.1 54 87.0
vmacro09451 Vaccinium macrocarpon HOM05D004494 ORTHO05D005493 1.0e-18 97.1 54 87.0
GSVIVG01035228001 Vitis vinifera HOM05D004494 ORTHO05D005493 1.0e-18 97.1 54 87.0
PSO421G0336 Papaver somniferum HOM05D004494 ORTHO05D005493 1.3e-18 96.7 54 87.0
PSO421G0392 Papaver somniferum HOM05D004494 ORTHO05D005493 1.3e-18 96.7 54 87.0
PGR083G0484 Punica granatum HOM05D004494 ORTHO05D005493 1.3e-18 96.7 50 86.0
MELO3C002173.2 Cucumis melo HOM05D004494 ORTHO05D005493 2.2e-18 95.9 54 87.0
MELO3C008157.2 Cucumis melo HOM05D004494 ORTHO05D005493 2.2e-18 95.9 54 87.0
CsaV3_1G007550 Cucumis sativus L. HOM05D004494 ORTHO05D005493 2.2e-18 95.9 54 87.0
Os01g0530366 Oryza sativa ssp. japonica HOM05D004494 ORTHO05D005493 2.9e-18 95.5 54 85.2
PSO782G1294 Papaver somniferum HOM05D004494 ORTHO05D005493 3.8e-18 95.1 50 86.0
SMO145G0179 Selaginella moellendorffii HOM05D004494 ORTHO05D005493 5.0e-18 94.7 52 82.7
CAN.G904.11 Capsicum annuum HOM05D004494 ORTHO05D005493 6.5e-18 94.4 54 85.2
Solyc10g007650.3 Solanum lycopersicum HOM05D004494 ORTHO05D005493 6.5e-18 94.4 54 85.2
Migut.H02056 Erythranthe guttata HOM05D004494 ORTHO05D005493 8.5e-18 94.0 54 85.2
THA.LOC104822608 Tarenaya hassleriana HOM05D004494 ORTHO05D005493 8.5e-18 94.0 54 85.2
Duzib192G0124 Durio zibethinus HOM05D004494 ORTHO05D005493 1.1e-17 93.6 54 85.2
Duzib235G0349 Durio zibethinus HOM05D004494 ORTHO05D005493 1.1e-17 93.6 54 85.2
Gohir.A06G195100 Gossypium hirsutum HOM05D004494 ORTHO05D005493 1.1e-17 93.6 54 85.2
Gohir.D06G202700 Gossypium hirsutum HOM05D004494 ORTHO05D005493 1.1e-17 93.6 54 85.2
Gohir.D11G001400 Gossypium hirsutum HOM05D004494 ORTHO05D005493 1.1e-17 93.6 54 85.2
Gorai.007G002300 Gossypium raimondii HOM05D004494 ORTHO05D005493 1.1e-17 93.6 54 85.2
Gorai.010G236600 Gossypium raimondii HOM05D004494 ORTHO05D005493 1.1e-17 93.6 54 85.2
PSO063G6745 Papaver somniferum HOM05D004494 ORTHO05D005493 1.1e-17 93.6 52 84.6
Thecc.06G057100 Theobroma cacao HOM05D004494 ORTHO05D005493 1.1e-17 93.6 54 85.2
TPR.G34872 Trifolium pratense HOM05D004494 ORTHO05D005493 1.1e-17 93.6 53 83.0
Thhalv10011934m.g Eutrema salsugineum HOM05D004494 ORTHO05D005493 1.4e-17 93.2 54 81.5
Aqoxy5G00339 Aquilegia oxysepala HOM05D004494 ORTHO05D005493 1.9e-17 92.8 54 85.2
Carub.0007s3448 Capsella rubella HOM05D004494 ORTHO05D005493 1.9e-17 92.8 51 82.4
HanXRQChr15g0468731 Helianthus annuus HOM05D004494 ORTHO05D005493 1.9e-17 92.8 55 83.6
THA.LOC104810404 Tarenaya hassleriana HOM05D004494 ORTHO05D005493 1.9e-17 92.8 54 85.2
AL7G48542 Arabidopsis lyrata HOM05D004494 ORTHO05D005493 3.2e-17 92.0 54 79.6
TWI81G0978 Tripterygium wilfordii HOM05D004494 ORTHO05D005493 3.2e-17 92.0 50 86.0
arahy.Tifrunner.gnm1.ann1.I96U63 Arachis hypogaea HOM05D004494 ORTHO05D005493 4.2e-17 91.7 94 57.4
CiPaw.06G022300 Carya illinoinensis HOM05D004494 ORTHO05D005493 4.2e-17 91.7 54 85.2
Pp3c24_13920 Physcomitrium patens HOM05D004494 ORTHO05D005493 4.2e-17 91.7 50 82.0
Gohir.A11G001800 Gossypium hirsutum HOM05D004494 ORTHO05D005493 5.5e-17 91.3 54 81.5
HanXRQChr09g0257491 Helianthus annuus HOM05D004494 ORTHO05D005493 5.5e-17 91.3 54 83.3
AT5G41010 Arabidopsis thaliana HOM05D004494 ORTHO05D005493 7.2e-17 90.9 54 79.6
TWI36G0745 Tripterygium wilfordii HOM05D004494 ORTHO05D005493 7.2e-17 90.9 54 83.3
Thhalv10028022m.g Eutrema salsugineum HOM05D004494 ORTHO05D005493 9.4e-17 90.5 54 79.6
Psat3g135240 Pisum sativum HOM05D004494 ORTHO05D005493 9.4e-17 90.5 54 79.6
BcaB04g17064 Brassica carinata HOM05D004494 ORTHO05D005493 1.2e-16 90.1 54 79.6
BcaB07g33308 Brassica carinata HOM05D004494 ORTHO05D005493 1.2e-16 90.1 54 79.6
BcaC01g01406 Brassica carinata HOM05D004494 ORTHO05D005493 1.2e-16 90.1 54 79.6
BcaC08g43550 Brassica carinata HOM05D004494 ORTHO05D005493 1.2e-16 90.1 54 79.6
A06p00840 Brassica napus HOM05D004494 ORTHO05D005493 1.2e-16 90.1 54 79.6
C06p09480 Brassica napus HOM05D004494 ORTHO05D005493 1.2e-16 90.1 54 79.6
BraA08t32198Z Brassica rapa HOM05D004494 ORTHO05D005493 1.2e-16 90.1 54 79.6
BraSC277t45950Z Brassica rapa HOM05D004494 ORTHO05D005493 1.2e-16 90.1 54 79.6
Ca_07598_v3 Cicer arietinum L. HOM05D004494 ORTHO05D005493 1.2e-16 90.1 54 77.8
Sp1g40220 Schrenkiella parvula HOM05D004494 ORTHO05D005493 1.2e-16 90.1 54 79.6
Sp7g00900 Schrenkiella parvula HOM05D004494 ORTHO05D005493 1.2e-16 90.1 54 79.6
CARHR043990 Cardamine hirsuta HOM05D004494 ORTHO05D005493 1.6e-16 89.7 54 79.6
CARHR213360 Cardamine hirsuta HOM05D004494 ORTHO05D005493 1.6e-16 89.7 54 79.6
MD14G1070900 Malus domestica HOM05D004494 ORTHO05D005493 1.6e-16 89.7 54 74.1
Medtr7g066240 Medicago truncatula HOM05D004494 ORTHO05D005493 1.6e-16 89.7 54 79.6
arahy.Tifrunner.gnm1.ann1.DLM5V3 Arachis hypogaea HOM05D004494 ORTHO05D005493 2.7e-16 89.0 53 79.2
Mapoly0066s0049 Marchantia polymorpha HOM05D004494 ORTHO05D005493 2.7e-16 89.0 52 80.8
GSVIVG01012569001 Vitis vinifera HOM05D004494 ORTHO05D005493 3.6e-16 88.6 49 85.7
Lj2g0005437 Lotus japonicus HOM05D004494 ORTHO05D005493 7.9e-16 87.4 48 85.4
GSVIVG01012562001 Vitis vinifera HOM05D004494 ORTHO05D005493 1.0e-15 87.0 54 81.5
Ah.06g192750 Amaranthus hybridus HOM05D006004 ORTHO05D006976 1.8e-15 86.3 66 68.2
Mapoly0119s0017 Marchantia polymorpha HOM05D004494 ORTHO05D005493 1.8e-15 86.3 50 78.0
Nn4g25134 Nelumbo nucifera HOM05D004494 ORTHO05D005493 3.0e-15 85.5 46 87.0
arahy.Tifrunner.gnm1.ann1.IHMM71 Arachis hypogaea HOM05D004494 ORTHO05D005493 3.9e-15 85.1 55 76.4
arahy.Tifrunner.gnm1.ann1.QX7YV8 Arachis hypogaea HOM05D004494 ORTHO05D005493 3.9e-15 85.1 55 76.4
Cpa.g.sc25.208 Carica papaya HOM05D004494 ORTHO05D005493 8.8e-15 84.0 46 84.8
SalBow1G8446 Salvia bowleyana HOM05D004494 ORTHO05D005493 8.8e-15 84.0 48 81.2
SalBow3G4220 Salvia bowleyana HOM05D004494 ORTHO05D005493 8.8e-15 84.0 48 81.2
SalBow6G4049 Salvia bowleyana HOM05D004494 ORTHO05D005493 8.8e-15 84.0 48 81.2
SEGI_39556 Sequoiadendron giganteum HOM05D004494 ORTHO05D005493 8.8e-15 84.0 55 76.4
AUR62038701 Chenopodium quinoa HOM05D004494 ORTHO05D005493 1.1e-14 83.6 46 84.8
Oeu012705.2 Olea europaea HOM05D004494 ORTHO05D005493 1.1e-14 83.6 46 84.8
Oeu058437.1 Olea europaea HOM05D004494 ORTHO05D005493 1.1e-14 83.6 46 84.8
Hund02298 Selenicereus undatus HOM05D004494 ORTHO05D005493 1.1e-14 83.6 46 84.8
Hund10311 Selenicereus undatus HOM05D004494 ORTHO05D005493 1.1e-14 83.6 46 84.8
ClCG01G014780 Citrullus lanatus HOM05D004494 ORTHO05D005493 2.5e-14 82.4 46 84.8
Nitab4.5_0002209g0130 Nicotiana tabacum HOM05D004494 ORTHO05D005493 2.5e-14 82.4 47 83.0
Oeu059243.2 Olea europaea HOM05D004494 ORTHO05D005493 2.5e-14 82.4 49 77.6
PGSC0003DMG400021289 Solanum tuberosum HOM05D004494 ORTHO05D005493 2.5e-14 82.4 50 76.0
Haze_25494 Corylus avellana HOM05D004494 ORTHO05D005493 3.3e-14 82.0 46 82.6
QL10p045758 Quercus lobata HOM05D004494 ORTHO05D005493 3.3e-14 82.0 46 80.4
Lsat_1_v5_gn_9_103341 Lactuca sativa HOM05D000133 ORTHO05D005913 4.3e-14 81.6 47 83.0
Cre07.g342352 Chlamydomonas reinhardtii HOM05D004494 ORTHO05D005493 5.7e-14 81.3 45 77.8
COL.COLO4_31155 Corchorus olitorius HOM05D004494 ORTHO05D005493 5.7e-14 81.3 48 81.2
Os07g0105100 Oryza sativa ssp. japonica HOM05D004494 ORTHO05D005493 5.7e-14 81.3 63 61.9
arahy.Tifrunner.gnm1.ann1.93HXT6 Arachis hypogaea HOM05D004494 ORTHO05D005493 7.4e-14 80.9 46 82.6
Nitab4.5_0000923g0150 Nicotiana tabacum HOM05D004494 ORTHO05D005493 7.4e-14 80.9 46 82.6
QL10p046170 Quercus lobata HOM05D004494 ORTHO05D005493 7.4e-14 80.9 42 85.7
arahy.Tifrunner.gnm1.ann1.WE4FU2 Arachis hypogaea HOM05D004494 ORTHO05D005493 9.7e-14 80.5 55 72.7
BolC3t21490H Brassica oleracea HOM05D004494 ORTHO05D005493 9.7e-14 80.5 52 71.2
DCAR_021072 Daucus carota HOM05D004494 ORTHO05D005493 9.7e-14 80.5 46 82.6
Migut.M00671 Erythranthe guttata HOM05D004494 ORTHO05D005493 9.7e-14 80.5 46 82.6
Prupe.4G215400 Prunus persica HOM05D004494 ORTHO05D005493 9.7e-14 80.5 54 66.7
Aa31LG1G19660 Aethionema arabicum HOM05D004494 ORTHO05D005493 1.7e-13 79.7 47 70.2
Aa31LG8G1870 Aethionema arabicum HOM05D004494 ORTHO05D005493 1.7e-13 79.7 47 70.2
Aa31LG10G1570 Aethionema arabicum HOM05D004494 ORTHO05D005493 2.2e-13 79.3 46 78.3
arahy.Tifrunner.gnm1.ann1.YVY1FB Arachis hypogaea HOM05D004494 ORTHO05D005493 2.2e-13 79.3 50 76.0
MBI06_g27491_MAGBIO Magnolia biondii HOM05D004494 ORTHO05D005493 2.8e-13 79.0 43 86.0
PRCOL_00006868 Prasinoderma coloniale HOM05D004494 ORTHO05D005493 4.8e-13 78.2 43 81.4
BcaC05g27278 Brassica carinata HOM05D004494 ORTHO05D005493 8.2e-13 77.4 47 76.6
QL09p054324 Quercus lobata HOM05D004494 ORTHO05D005493 8.2e-13 77.4 42 83.3
A05p17960 Brassica napus HOM05D004494 ORTHO05D005493 1.1e-12 77.0 46 78.3
A08p01450 Brassica napus HOM05D004494 ORTHO05D005493 1.1e-12 77.0 46 78.3
C03p91710 Brassica napus HOM05D004494 ORTHO05D005493 1.1e-12 77.0 46 78.3
BraA05t20689Z Brassica rapa HOM05D004494 ORTHO05D005493 1.1e-12 77.0 46 78.3
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 1.4e-12 76.6 72 55.6
GSVIVG01012570001 Vitis vinifera HOM05D004494 ORTHO05D005493 2.4e-12 75.9 42 83.3
C06p15220 Brassica napus HOM05D004494 ORTHO05D005493 1.5e-11 73.2 69 59.4
BolC8t52568H Brassica oleracea HOM05D004494 ORTHO05D005493 2.6e-11 72.4 44 77.3
FAN16G2751 Fragaria x ananassa HOM05D004494 ORTHO05D005493 7.7e-11 70.9 67 49.3
FvH4_3g22950 Fragaria vesca HOM05D004494 ORTHO05D005493 1.0e-10 70.5 79 48.1
BolC6t36697H Brassica oleracea HOM05D004494 ORTHO05D005493 1.7e-10 69.7 46 73.9
FAN21G1244 Fragaria x ananassa HOM05D004494 ORTHO05D005493 1.7e-10 69.7 63 52.4
RcHm_v2.0_Chr5g0040221 Rosa chinensis HOM05D004494 ORTHO05D005493 1.7e-10 69.7 62 53.2
MBI16_g26393_MAGBIO Magnolia biondii HOM05D004494 ORTHO05D005493 2.2e-10 69.3 45 73.3
Aa31LG1G19360 Aethionema arabicum HOM05D004494 ORTHO05D005493 2.9e-10 68.9 74 44.6
Aa31LG1G19670 Aethionema arabicum HOM05D000171 ORTHO05D000101 6.5e-10 67.8 39 71.8
Haze_27787 Corylus avellana HOM05D004494 ORTHO05D005493 8.5e-10 67.4 56 50.0
Rhsim04G0032100 Rhododendron simsii HOM05D004494 ORTHO05D005493 4.2e-09 65.1 35 80.0
arahy.Tifrunner.gnm1.ann1.S5KS5D Arachis hypogaea HOM05D004494 ORTHO05D005493 5.5e-09 64.7 44 65.9
BcaC08g44099 Brassica carinata HOM05D004494 ORTHO05D005493 7.2e-09 64.3 70 52.9
AT1G53690 Arabidopsis thaliana HOM05D004494 ORTHO05D005493 1.2e-08 63.5 46 58.7
Peaxi162Scf00111g00531 Petunia axillaris HOM05D004494 ORTHO05D005493 1.2e-08 63.5 63 54.0
unitig_26.g9512 Utricularia gibba HOM05D004494 ORTHO05D005493 4.7e-08 61.6 85 47.1
FAN11G3063 Fragaria x ananassa HOM05D004494 ORTHO05D005493 1.4e-07 60.1 55 50.9
Carub.0001s4296 Capsella rubella HOM05D004494 ORTHO05D005493 8.8e-07 57.4 38 63.2
arahy.Tifrunner.gnm1.ann1.SVJ78B Arachis hypogaea HOM05D004494 ORTHO05D083263 7.4e-06 54.3 29 79.3
C05p31860 Brassica napus HOM05D004494 ORTHO05D005493 9.7e-06 53.9 31 77.4
BolC5t31914H Brassica oleracea HOM05D004494 ORTHO05D005493 9.7e-06 53.9 31 77.4


User provided reference genes

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