Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g17630 Fragaria vesca HOM05D003481 ORTHO05D004001 5.2e-95 351.3 210 100.0
FAN27G0233 Fragaria x ananassa HOM05D003481 ORTHO05D004001 3.2e-92 342.0 210 92.4
FAN10G3643 Fragaria x ananassa HOM05D003481 ORTHO05D004001 2.7e-91 339.0 210 96.7
FvH4_4g15480 Fragaria vesca HOM05D003481 ORTHO05D004001 3.5e-91 338.6 210 97.1
FAN18G3112 Fragaria x ananassa HOM05D003481 ORTHO05D004001 5.6e-89 331.3 214 94.4
FAN11G1212 Fragaria x ananassa HOM05D003481 ORTHO05D004001 8.0e-88 327.4 210 96.2
FvH4_4g15181 Fragaria vesca HOM05D003481 ORTHO05D004001 1.2e-75 287.0 159 91.2
FvH4_6g01010 Fragaria vesca HOM05D003481 ORTHO05D004001 1.4e-52 210.3 153 87.6
FAN14G4292 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.4e-52 210.3 153 86.9
FAN02G3168 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.3e-50 203.8 152 89.5
FAN05G1738 Fragaria x ananassa HOM05D003481 ORTHO05D004001 5.1e-50 201.8 154 89.0
FAN09G1882 Fragaria x ananassa HOM05D003481 ORTHO05D004001 6.6e-50 201.4 152 89.5
RcHm_v2.0_Chr3g0448451 Rosa chinensis HOM05D003481 ORTHO05D004001 7.6e-46 188.0 151 68.2
MD04G1237800 Malus domestica HOM05D003481 ORTHO05D004001 5.3e-39 165.2 144 61.1
MD12G1256000 Malus domestica HOM05D003481 ORTHO05D004001 9.0e-39 164.5 144 61.8
Manes.03G070216 Manihot esculenta HOM05D003481 ORTHO05D004001 2.5e-33 146.4 99 68.7
TWI38G1754 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 9.6e-33 144.4 101 70.3
Sed0000926 Sechium edule HOM05D003481 ORTHO05D004001 1.1e-31 141.0 94 73.4
Sed0003597 Sechium edule HOM05D003481 ORTHO05D004001 1.1e-31 141.0 94 73.4
TWI15G0246 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 1.4e-31 140.6 101 68.3
CiPaw.09G149800 Carya illinoinensis HOM05D003481 ORTHO05D004001 6.9e-31 138.3 99 68.7
Dinv03119 Davidia involucrata HOM05D003481 ORTHO05D004001 1.5e-30 137.1 101 65.3
COL.COLO4_26841 Corchorus olitorius HOM05D003481 ORTHO05D004001 2.6e-30 136.3 99 66.7
Lj1A1155T51 Lonicera japonica HOM05D003481 ORTHO05D004001 2.6e-30 136.3 101 64.4
Cpa.g.sc192.16 Carica papaya HOM05D003481 ORTHO05D004001 5.8e-30 135.2 93 71.0
Ciclev10014122m.g Citrus clementina HOM05D003481 ORTHO05D004001 1.7e-29 133.7 93 69.9
Hund09767 Selenicereus undatus HOM05D003481 ORTHO05D004001 3.8e-29 132.5 99 62.6
Duzib160G0577 Durio zibethinus HOM05D003481 ORTHO05D004001 5.0e-29 132.1 97 64.9
EL10Ac3g05104 Beta vulgaris HOM05D003481 ORTHO05D004001 1.1e-28 131.0 90 67.8
ClCG01G025690 Citrullus lanatus HOM05D003481 ORTHO05D004001 1.1e-28 131.0 94 69.1
Thecc.06G002800 Theobroma cacao HOM05D003481 ORTHO05D004001 1.1e-28 131.0 97 64.9
MELO3C007016.2 Cucumis melo HOM05D003481 ORTHO05D004001 1.4e-28 130.6 94 68.1
CsaV3_6G052920 Cucumis sativus L. HOM05D003481 ORTHO05D004001 1.9e-28 130.2 94 68.1
Haze_05983 Corylus avellana HOM05D003481 ORTHO05D004001 2.5e-28 129.8 99 65.7
CSS0014471 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 3.2e-28 129.4 101 62.4
QL05p065371 Quercus lobata HOM05D003481 ORTHO05D004001 4.2e-28 129.0 100 68.0
QL08p057617 Quercus lobata HOM05D003481 ORTHO05D004001 4.2e-28 129.0 100 68.0
Ah.13g071230 Amaranthus hybridus HOM05D003481 ORTHO05D004001 5.5e-28 128.6 90 65.6
AUR62028144 Chenopodium quinoa HOM05D003481 ORTHO05D004001 5.5e-28 128.6 90 65.6
Duzib235G1444 Durio zibethinus HOM05D003481 ORTHO05D004001 5.5e-28 128.6 97 64.9
Gohir.A10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 5.5e-28 128.6 97 66.0
Gohir.D10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 5.5e-28 128.6 97 66.0
Gorai.011G004800 Gossypium raimondii HOM05D003481 ORTHO05D004001 5.5e-28 128.6 97 66.0
Cfa000748 Carpinus fangiana HOM05D003481 ORTHO05D004001 7.1e-28 128.3 99 64.6
Hma1.2p1_0410F.1_g147020 Hydrangea macrophylla HOM05D003481 ORTHO05D004001 7.1e-28 128.3 97 62.9
AUR62005919 Chenopodium quinoa HOM05D003481 ORTHO05D004001 1.2e-27 127.5 90 64.4
Atru.chr8.321 Acer truncatum HOM05D003481 ORTHO05D004001 2.1e-27 126.7 101 60.4
Phvul.009G217900 Phaseolus vulgaris HOM05D003481 ORTHO05D004001 2.1e-27 126.7 104 58.7
Sabra11G0145500 Salix brachista HOM05D003481 ORTHO05D004001 2.1e-27 126.7 114 57.0
CSS0036853 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 2.7e-27 126.3 88 68.2
Potri.001G442900 Populus trichocarpa HOM05D003481 ORTHO05D004001 6.1e-27 125.2 98 64.3
DCAR_001341 Daucus carota HOM05D003481 ORTHO05D004001 1.3e-26 124.0 99 59.6
arahy.Tifrunner.gnm1.ann1.D6X22R Arachis hypogaea HOM05D003481 ORTHO05D004001 2.5e-25 119.8 112 55.4
arahy.Tifrunner.gnm1.ann1.R9RUHP Arachis hypogaea HOM05D003481 ORTHO05D004001 2.5e-25 119.8 112 55.4
BraA03t14280Z Brassica rapa HOM05D003481 ORTHO05D004001 3.3e-25 119.4 96 64.6
Potri.011G154000 Populus trichocarpa HOM05D003481 ORTHO05D004001 3.3e-25 119.4 111 54.1
Actinidia02453 Actinidia chinensis HOM05D003481 ORTHO05D004001 7.4e-25 118.2 111 57.7
Lalb_Chr08g0233181 Lupinus albus HOM05D003481 ORTHO05D004001 7.4e-25 118.2 101 59.4
Actinidia29310 Actinidia chinensis HOM05D003481 ORTHO05D004001 1.3e-24 117.5 111 57.7
Ca_02512_v3 Cicer arietinum L. HOM05D003481 ORTHO05D004001 1.3e-24 117.5 95 57.9
HPP92_026238 Vanilla planifolia HOM05D003481 ORTHO05D004001 1.3e-24 117.5 86 60.5
HanXRQChr04g0119881 Helianthus annuus HOM05D003481 ORTHO05D004001 1.6e-24 117.1 101 60.4
Medtr2g047908 Medicago truncatula HOM05D003481 ORTHO05D004001 2.2e-24 116.7 99 54.5
TAR624G0988 Trochodendron aralioides HOM05D003481 ORTHO05D004001 2.8e-24 116.3 105 55.2
Glyma.15G192300 Glycine max HOM05D003481 ORTHO05D004001 4.8e-24 115.5 109 54.1
Glyma.09G083800 Glycine max HOM05D003481 ORTHO05D004001 6.3e-24 115.2 108 55.6
Nn4g25046 Nelumbo nucifera HOM05D003481 ORTHO05D004001 6.3e-24 115.2 117 53.8
Eucgr.K01948 Eucalyptus grandis HOM05D003481 ORTHO05D004001 8.2e-24 114.8 109 56.0
A03p51930 Brassica napus HOM05D003481 ORTHO05D004001 1.4e-23 114.0 96 62.5
Psat0s4071g0040 Pisum sativum HOM05D003481 ORTHO05D004001 2.4e-23 113.2 95 55.8
Rhsim13G0126800 Rhododendron simsii HOM05D003481 ORTHO05D004001 6.9e-23 111.7 112 55.4
C07p50430 Brassica napus HOM05D003481 ORTHO05D004001 9.0e-23 111.3 94 60.6
Sc13g0010770 Simmondsia chinensis HOM05D003481 ORTHO05D004001 9.0e-23 111.3 101 57.4
TAR626G0933 Trochodendron aralioides HOM05D003481 ORTHO05D004001 9.0e-23 111.3 104 53.8
vmacro03482 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 9.0e-23 111.3 99 58.6
DCAR_004311 Daucus carota HOM05D003481 ORTHO05D004001 1.2e-22 110.9 97 56.7
BolC7t45545H Brassica oleracea HOM05D003481 ORTHO05D004001 2.0e-22 110.2 94 59.6
Aqoxy7G02779 Aquilegia oxysepala HOM05D003481 ORTHO05D004001 2.6e-22 109.8 95 58.9
BcaNung02560 Brassica carinata HOM05D003481 ORTHO05D004001 2.6e-22 109.8 94 59.6
BcaNung07226 Brassica carinata HOM05D003481 ORTHO05D004001 2.6e-22 109.8 94 59.6
Cc09_g07300 Coffea canephora HOM05D003481 ORTHO05D004001 2.6e-22 109.8 109 56.0
unitig_21.g20207 Utricularia gibba HOM05D003481 ORTHO05D004001 2.6e-22 109.8 96 62.5
TPR.G22668 Trifolium pratense HOM05D003481 ORTHO05D004001 4.5e-22 109.0 97 56.7
Oeu008973.2 Olea europaea HOM05D003481 ORTHO05D004001 1.3e-21 107.5 98 61.2
Sopen02g018780 Solanum pennellii HOM05D003481 ORTHO05D004001 1.3e-21 107.5 103 58.3
ATR1132G122 Amborella trichopoda HOM05D003481 ORTHO05D004001 1.7e-21 107.1 96 54.2
CDE02G2268 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 2.2e-21 106.7 101 52.5
Peaxi162Scf00267g00085 Petunia axillaris HOM05D003481 ORTHO05D004001 2.2e-21 106.7 96 59.4
SGA_v2.0_scaffold341G49384 Striga asiatica HOM05D003481 ORTHO05D004001 2.2e-21 106.7 97 58.8
A01p11430 Brassica napus HOM05D003481 ORTHO05D004001 2.9e-21 106.3 96 59.4
BraA01t01089Z Brassica rapa HOM05D003481 ORTHO05D004001 2.9e-21 106.3 96 59.4
Lj6g0004300 Lotus japonicus HOM05D003481 ORTHO05D004001 2.9e-21 106.3 95 52.6
BcaNung07304 Brassica carinata HOM05D003481 ORTHO05D004001 3.8e-21 105.9 92 58.7
Solyc02g030100.4 Solanum lycopersicum HOM05D003481 ORTHO05D004001 3.8e-21 105.9 103 56.3
CAN.G306.7 Capsicum annuum HOM05D003481 ORTHO05D004001 5.0e-21 105.5 96 60.4
Migut.H01305 Erythranthe guttata HOM05D003481 ORTHO05D004001 5.0e-21 105.5 98 59.2
Lsat_1_v5_gn_7_35621 Lactuca sativa HOM05D003481 ORTHO05D004001 5.0e-21 105.5 92 59.8
BcaNung01774 Brassica carinata HOM05D003481 ORTHO05D004001 6.5e-21 105.1 96 58.3
CAN.G954.8 Capsicum annuum HOM05D003481 ORTHO05D004001 6.5e-21 105.1 101 57.4
ECA236G0663 Erigeron canadensis HOM05D003481 ORTHO05D004001 8.5e-21 104.8 110 50.9
Thhalv10024300m.g Eutrema salsugineum HOM05D003481 ORTHO05D004001 1.9e-20 103.6 102 55.9
Sp7g18100 Schrenkiella parvula HOM05D003481 ORTHO05D004001 1.9e-20 103.6 102 55.9
Aa31LG6G2100 Aethionema arabicum HOM05D003481 ORTHO05D004001 3.2e-20 102.8 96 58.3
BcaC09g51402 Brassica carinata HOM05D003481 ORTHO05D004001 3.2e-20 102.8 146 44.5
C01p13480 Brassica napus HOM05D003481 ORTHO05D004001 3.2e-20 102.8 146 45.2
BolC1t01321H Brassica oleracea HOM05D003481 ORTHO05D004001 3.2e-20 102.8 146 45.2
Oeu051246.1 Olea europaea HOM05D003481 ORTHO05D004001 3.2e-20 102.8 94 59.6
Nitab4.5_0010415g0040 Nicotiana tabacum HOM05D003481 ORTHO05D004001 5.5e-20 102.1 95 58.9
SHI31592 Sapria himalayana HOM05D003481 ORTHO05D004001 5.5e-20 102.1 90 54.4
Sopen02g009430 Solanum pennellii HOM05D003481 ORTHO05D004001 5.5e-20 102.1 103 55.3
AL7G34630 Arabidopsis lyrata HOM05D003481 ORTHO05D004001 7.2e-20 101.7 96 57.3
AT4G19490 Arabidopsis thaliana HOM05D003481 ORTHO05D004001 7.2e-20 101.7 96 57.3
CARHR226290 Cardamine hirsuta HOM05D003481 ORTHO05D004001 1.6e-19 100.5 145 43.4
CDE09G0686 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 2.1e-19 100.1 101 50.5
HanXRQChr06g0183401 Helianthus annuus HOM05D003481 ORTHO05D004001 2.1e-19 100.1 112 50.0
Nitab4.5_0002444g0030 Nicotiana tabacum HOM05D003481 ORTHO05D004001 2.7e-19 99.8 96 56.2
THA.LOC104812894 Tarenaya hassleriana HOM05D003481 ORTHO05D004001 2.7e-19 99.8 102 54.9
AagrBONN_evm.TU.Sc2ySwM_228.4333 Anthoceros agrestis HOM05D003481 ORTHO05D004001 3.6e-19 99.4 102 52.9
SalBow7G3129 Salvia bowleyana HOM05D003481 ORTHO05D004001 3.6e-19 99.4 98 55.1
SEGI_08137 Sequoiadendron giganteum HOM05D003481 ORTHO05D004001 3.6e-19 99.4 97 49.5
PSO063G1971 Papaver somniferum HOM05D003481 ORTHO05D004001 1.0e-18 97.8 101 48.5
PSO170G3331 Papaver somniferum HOM05D003481 ORTHO05D004001 1.0e-18 97.8 101 48.5
Carub.0007s2172 Capsella rubella HOM05D003481 ORTHO05D004001 1.4e-18 97.4 152 40.8
Nitab4.5_0001298g0050 Nicotiana tabacum HOM05D003481 ORTHO05D004001 1.4e-18 97.4 92 60.9
Nitab4.5_0000378g0090 Nicotiana tabacum HOM05D003481 ORTHO05D004001 6.7e-18 95.1 92 59.8
Pp3c11_18680 Physcomitrium patens HOM05D003481 ORTHO05D004001 1.7e-16 90.5 97 48.5
Os04g0212200 Oryza sativa ssp. japonica HOM05D003481 ORTHO05D004001 3.7e-16 89.4 82 53.7
Mapoly0095s0011 Marchantia polymorpha HOM05D003481 ORTHO05D004001 4.8e-16 89.0 97 44.3
Zm00001eb419780 Zea mays HOM05D003481 ORTHO05D004001 6.3e-16 88.6 97 49.5
Zm00001eb088370 Zea mays HOM05D003481 ORTHO05D004001 1.1e-15 87.8 97 49.5
SMO137G0352 Selaginella moellendorffii HOM05D003481 ORTHO05D004001 3.8e-13 79.3 90 44.4
GSVIVG01037972001 Vitis vinifera HOM05D003481 ORTHO05D004001 3.9e-10 69.3 41 73.2
CBR_g56099 Chara braunii HOM05D003481 ORTHO05D004001 2.6e-06 56.6 156 26.3


User provided reference genes

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