Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g17250 Fragaria vesca HOM05D006707 ORTHO05D008243 1.2e-220 770.4 683 100.0
FAN18G2052 Fragaria x ananassa HOM05D006707 ORTHO05D008243 1.2e-220 770.4 683 100.0
FAN08G3326 Fragaria x ananassa HOM05D006707 ORTHO05D008243 7.9e-193 677.9 683 93.7
RcHm_v2.0_Chr7g0178541 Rosa chinensis HOM05D006707 ORTHO05D008243 1.7e-174 617.1 694 88.0
MD06G1231100 Malus domestica HOM05D006707 ORTHO05D008243 6.8e-144 515.4 478 75.1
Prupe.5G232400 Prunus persica HOM05D006707 ORTHO05D008243 6.2e-97 359.4 311 73.6
CARHR093330 Cardamine hirsuta HOM05D006707 ORTHO05D008243 2.0e-95 354.4 366 62.6
Peaxi162Scf00683g00048 Petunia axillaris HOM05D006707 ORTHO05D008243 2.2e-94 350.9 397 58.9
THA.LOC104820351 Tarenaya hassleriana HOM05D006707 ORTHO05D008243 1.2e-92 345.1 366 61.5
HPP92_007817 Vanilla planifolia HOM05D006707 ORTHO05D008243 7.8e-92 342.4 390 50.3
GSVIVG01016661001 Vitis vinifera HOM05D006707 ORTHO05D008243 2.5e-90 337.4 339 64.9
Eucgr.K02270 Eucalyptus grandis HOM05D006707 ORTHO05D008243 1.7e-86 324.7 336 64.0
PGSC0003DMG400005747 Solanum tuberosum HOM05D006707 ORTHO05D008243 7.1e-85 319.3 351 60.7
Solyc03g118790.3 Solanum lycopersicum HOM05D006707 ORTHO05D008243 2.1e-84 317.8 352 60.5
Lj5P156T67 Lonicera japonica HOM05D006707 ORTHO05D008243 4.6e-84 316.6 367 58.9
Nitab4.5_0003968g0010 Nicotiana tabacum HOM05D006707 ORTHO05D008243 1.0e-83 315.5 324 64.5
Sopen03g037740 Solanum pennellii HOM05D006707 ORTHO05D008243 1.0e-83 315.5 348 60.9
CAN.G1129.54 Capsicum annuum HOM05D006707 ORTHO05D008243 9.6e-82 308.9 353 60.1
AT3G18020 Arabidopsis thaliana HOM05D006707 ORTHO05D008243 1.1e-80 305.4 329 62.0
FAN13G2143 Fragaria x ananassa HOM05D006707 ORTHO05D008243 1.4e-80 305.1 443 80.6
TAR622G1063 Trochodendron aralioides HOM05D006707 ORTHO05D008243 1.8e-80 304.7 368 57.3
BcaB06g25867 Brassica carinata HOM05D006707 ORTHO05D008243 4.2e-77 293.5 326 61.0
Dinv07298 Davidia involucrata HOM05D006707 ORTHO05D008243 1.2e-76 292.0 306 66.0
BraA05t22012Z Brassica rapa HOM05D006707 ORTHO05D008243 4.6e-76 290.0 326 60.7
A05p31810 Brassica napus HOM05D006707 ORTHO05D008243 7.9e-76 289.3 326 60.1
BcaC05g28725 Brassica carinata HOM05D006707 ORTHO05D008243 1.0e-75 288.9 328 59.5
BolC5t33562H Brassica oleracea HOM05D006707 ORTHO05D008243 1.0e-75 288.9 328 59.5
Hund22248 Selenicereus undatus HOM05D006707 ORTHO05D008243 3.0e-75 287.3 315 61.6
Sp3g16130 Schrenkiella parvula HOM05D006707 ORTHO05D008243 9.6e-74 282.3 320 60.6
QL11p014448 Quercus lobata HOM05D006707 ORTHO05D008243 1.3e-73 282.0 315 58.1
Ca_07699_v3 Cicer arietinum L. HOM05D006707 ORTHO05D000099 2.1e-73 281.2 323 59.8
Dinv27614 Davidia involucrata HOM05D006707 ORTHO05D008243 6.2e-73 279.6 261 71.6
QL11p013929 Quercus lobata HOM05D006707 ORTHO05D008243 6.9e-72 276.2 317 56.8
Manes.06G007500 Manihot esculenta HOM05D006707 ORTHO05D008243 3.4e-71 273.9 307 61.2
Haze_21123 Corylus avellana HOM05D006707 ORTHO05D008243 1.0e-70 272.3 319 59.9
C05p48280 Brassica napus HOM05D006707 ORTHO05D008243 1.3e-70 271.9 326 58.3
Cfa019000 Carpinus fangiana HOM05D006707 ORTHO05D008243 2.9e-70 270.8 320 60.0
Nn4g24204 Nelumbo nucifera HOM05D006707 ORTHO05D008243 2.9e-70 270.8 264 68.6
CiPaw.15G142400 Carya illinoinensis HOM05D006707 ORTHO05D008243 8.4e-70 269.2 315 59.0
RhsimUnG0239000 Rhododendron simsii HOM05D006707 ORTHO05D008243 2.5e-69 267.7 295 62.4
Thhalv10020183m.g Eutrema salsugineum HOM05D006707 ORTHO05D008243 2.7e-68 264.2 297 60.6
Actinidia25143 Actinidia chinensis HOM05D006707 ORTHO05D008243 6.0e-68 263.1 310 59.4
Sed0000825 Sechium edule HOM05D006707 ORTHO05D008243 3.0e-67 260.8 343 56.0
AL3G31170 Arabidopsis lyrata HOM05D006707 ORTHO05D008243 8.7e-67 259.2 294 60.9
Thecc.03G054200 Theobroma cacao HOM05D006707 ORTHO05D008243 1.1e-66 258.8 301 57.5
RhsimUnG0220600 Rhododendron simsii HOM05D006707 ORTHO05D008243 1.5e-66 258.5 262 66.4
Potri.015G039300 Populus trichocarpa HOM05D006707 ORTHO05D008243 7.4e-66 256.1 302 59.9
TWI81G0630 Tripterygium wilfordii HOM05D006707 ORTHO05D008243 1.3e-65 255.4 300 60.3
Rhsim03G0042300 Rhododendron simsii HOM05D006707 ORTHO05D008243 2.2e-65 254.6 262 65.6
Sabra15G0069900 Salix brachista HOM05D006707 ORTHO05D008243 2.2e-65 254.6 307 59.6
COL.COLO4_35387 Corchorus olitorius HOM05D006707 ORTHO05D008243 3.7e-65 253.8 308 56.2
Sabra15G0057600 Salix brachista HOM05D006707 ORTHO05D008243 6.3e-65 253.1 307 58.6
Sabra15G0070700 Salix brachista HOM05D006707 ORTHO05D008243 6.3e-65 253.1 295 60.7
Sabra15G0038500 Salix brachista HOM05D006707 ORTHO05D008243 1.4e-64 251.9 254 66.5
CsaV3_1G004300 Cucumis sativus L. HOM05D006707 ORTHO05D008243 1.0e-62 245.7 270 64.8
Carub.0003s1773 Capsella rubella HOM05D006707 ORTHO05D008243 1.7e-62 245.0 294 58.5
Oeu010709.1 Olea europaea HOM05D006707 ORTHO05D008243 2.9e-62 244.2 279 62.0
ATR0564G450 Amborella trichopoda HOM05D006707 ORTHO05D008243 5.0e-62 243.4 335 53.7
EL10Ac3g06722 Beta vulgaris HOM05D006707 ORTHO05D008243 8.5e-62 242.7 266 63.2
Psat3g124000 Pisum sativum HOM05D006707 ORTHO05D008243 1.1e-61 242.3 323 54.5
arahy.Tifrunner.gnm1.ann1.U18B68 Arachis hypogaea HOM05D000449 ORTHO05D008243 1.4e-61 241.9 359 52.9
Duzib205G0649 Durio zibethinus HOM05D006707 ORTHO05D008243 3.2e-61 240.7 304 54.6
Medtr7g070420 Medicago truncatula HOM05D006707 ORTHO05D008243 3.2e-61 240.7 330 53.6
MSTRG.16972 Avicennia marina HOM05D006707 ORTHO05D008243 4.2e-61 240.4 268 63.1
ClCG06G014360 Citrullus lanatus HOM05D006707 ORTHO05D008243 4.2e-61 240.4 313 58.5
Lj5A157G52 Lonicera japonica HOM05D006707 ORTHO05D008243 1.0e-59 235.7 249 65.1
Nitab4.5_0001456g0170 Nicotiana tabacum HOM05D006707 ORTHO05D008243 1.0e-59 235.7 318 56.9
Migut.I00309 Erythranthe guttata HOM05D006707 ORTHO05D008243 6.7e-59 233.0 270 60.4
AUR62035893 Chenopodium quinoa HOM05D006707 ORTHO05D008243 1.1e-58 232.3 268 62.7
Sc10g0004790 Simmondsia chinensis HOM05D006707 ORTHO05D008243 1.1e-58 232.3 264 61.7
DCAR_014733 Daucus carota HOM05D006707 ORTHO05D008243 7.4e-58 229.6 270 61.9
PSO478G5041 Papaver somniferum HOM05D006707 ORTHO05D008243 9.7e-58 229.2 294 60.5
AUR62035349 Chenopodium quinoa HOM05D006707 ORTHO05D008243 2.2e-57 228.0 266 62.4
Aqoxy3G00090 Aquilegia oxysepala HOM05D006707 ORTHO05D008243 4.8e-57 226.9 360 50.3
SalBow6G7169 Salvia bowleyana HOM05D006707 ORTHO05D008243 8.2e-57 226.1 268 58.2
Ah.04g153500 Amaranthus hybridus HOM05D006707 ORTHO05D008243 5.3e-56 223.4 265 60.8
arahy.Tifrunner.gnm1.ann1.72MQAV Arachis hypogaea HOM05D000449 ORTHO05D008243 9.1e-56 222.6 359 51.0
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 5.9e-55 219.9 359 50.4
Cc04_g06350 Coffea canephora HOM05D006707 ORTHO05D008243 7.7e-55 219.5 314 55.1
Aa31LG8G4870 Aethionema arabicum HOM05D006707 ORTHO05D008243 2.2e-54 218.0 261 61.3
vmacro07812 Vaccinium macrocarpon HOM05D006707 ORTHO05D008243 4.2e-53 213.8 357 37.5
CANSAT11G1044 Cannabis sativa HOM05D006707 ORTHO05D008243 5.5e-53 213.4 219 68.0
CDE07G1516 Ceratophyllum demersum HOM05D006707 ORTHO05D008243 1.0e-51 209.1 367 48.2
Os07g0674300 Oryza sativa ssp. japonica HOM05D006707 ORTHO05D008243 5.7e-50 203.4 350 40.9
Lsat_1_v5_gn_6_99620 Lactuca sativa HOM05D006707 ORTHO05D008243 4.1e-48 197.2 284 55.6
Zm00001eb111370 Zea mays HOM05D006707 ORTHO05D008243 7.0e-48 196.4 326 38.7
Cpa.g.sc3.405 Carica papaya HOM05D006707 ORTHO05D008243 2.0e-47 194.9 280 52.9
PGR044G0521 Punica granatum HOM05D006707 ORTHO05D008243 7.7e-47 193.0 259 57.1
Atru.BG.186.p Acer truncatum HOM05D006707 ORTHO05D008243 1.3e-46 192.2 218 66.5
SGA_v2.0_scaffold192G40603 Striga asiatica HOM05D006707 ORTHO05D008243 2.5e-45 188.0 296 51.4
Glyma.18G207800 Glycine max HOM05D006707 ORTHO05D008243 1.6e-44 185.3 236 60.2
Lj1g0019371 Lotus japonicus HOM05D006707 ORTHO05D008243 1.0e-43 182.6 221 63.8
Lalb_Chr04g0260761 Lupinus albus HOM05D006707 ORTHO05D008243 2.3e-43 181.4 221 62.9
TPR.G37093 Trifolium pratense HOM05D006707 ORTHO05D008243 4.4e-42 177.2 220 61.8
Phvul.010G093200 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 9.7e-42 176.0 222 60.8
TPR.G35815 Trifolium pratense HOM05D006707 ORTHO05D008243 2.4e-40 171.4 225 60.0
VMungo1383G0390 Vigna mungo HOM05D006707 ORTHO05D008243 2.4e-40 171.4 222 60.4
HanXRQChr10g0279071 Helianthus annuus HOM05D006707 ORTHO05D008243 5.9e-39 166.8 263 53.6
PSO017G3187 Papaver somniferum HOM05D006707 ORTHO05D008243 1.5e-37 162.2 181 51.4
arahy.Tifrunner.gnm1.ann1.55ENF0 Arachis hypogaea HOM05D006707 ORTHO05D008243 7.2e-37 159.8 247 39.7
Haze_18837 Corylus avellana HOM05D006707 ORTHO05D008243 1.0e-35 156.0 136 57.4
ECA246G2801 Erigeron canadensis HOM05D006707 ORTHO05D008243 7.0e-32 143.3 174 45.4
SEGI_24072 Sequoiadendron giganteum HOM05D006707 ORTHO05D008243 9.1e-32 142.9 291 45.4
Phvul.008G091500 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 6.1e-28 130.2 165 43.0
arahy.Tifrunner.gnm1.ann1.1F7K7B Arachis hypogaea HOM05D006707 ORTHO05D008243 2.6e-26 124.8 143 50.3
QL11p014441 Quercus lobata HOM05D006707 ORTHO05D008243 2.6e-26 124.8 136 53.7
Ciclev10024364m.g Citrus clementina HOM05D006707 ORTHO05D008243 1.7e-17 95.5 70 65.7
CSS0017365 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 8.6e-14 83.2 125 49.6
CSS0026236 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 8.6e-14 83.2 125 49.6
HanXRQChr10g0277831 Helianthus annuus HOM05D006707 ORTHO05D008243 8.6e-14 83.2 169 32.5
Rhsim03G0043000 Rhododendron simsii HOM05D006707 ORTHO05D008243 1.5e-13 82.4 57 66.7
PSO017G4261 Papaver somniferum HOM05D006707 ORTHO05D008243 4.4e-10 70.9 48 68.8
THA.LOC104808118 Tarenaya hassleriana HOM05D006918 ORTHO05D008525 1.3e-09 69.3 141 28.4
TAR371G0591 Trochodendron aralioides HOM05D006569 ORTHO05D007515 4.9e-09 67.4 140 30.7
CARHR072750 Cardamine hirsuta HOM05D006918 ORTHO05D008525 7.0e-08 63.5 138 27.5
CAN.G630.84 Capsicum annuum HOM05D006556 ORTHO05D008146 9.2e-08 63.2 103 29.1
Carub.0002s2595 Capsella rubella HOM05D006918 ORTHO05D008525 1.2e-07 62.8 142 28.9
CDE07G1153 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 1.6e-07 62.4 98 30.6
Thhalv10018334m.g Eutrema salsugineum HOM05D006918 ORTHO05D008525 1.6e-07 62.4 138 27.5
Rhsim10G0193900 Rhododendron simsii HOM05D006556 ORTHO05D008146 1.6e-07 62.4 98 28.6
Atru.chr3.118 Acer truncatum HOM05D006556 ORTHO05D008146 2.0e-07 62.0 98 28.6
A07p44220 Brassica napus HOM05D006918 ORTHO05D008525 2.7e-07 61.6 138 27.5
BolC6t40313H Brassica oleracea HOM05D006918 ORTHO05D008525 2.7e-07 61.6 138 27.5
BcaC08g47471 Brassica carinata HOM05D006918 ORTHO05D008525 3.5e-07 61.2 138 27.5
BraA07t31930Z Brassica rapa HOM05D006918 ORTHO05D008525 3.5e-07 61.2 130 26.9
Sp5g34130 Schrenkiella parvula HOM05D006918 ORTHO05D008525 3.5e-07 61.2 138 27.5
Cpa.g.sc101.54 Carica papaya HOM05D000104 ORTHO05D009920 6.0e-07 60.5 136 25.0
Solyc03g095200.1 Solanum lycopersicum HOM05D000104 ORTHO05D009920 6.0e-07 60.5 113 30.1
Os02g0582300 Oryza sativa ssp. japonica HOM05D003210 ORTHO05D000001 7.8e-07 60.1 139 25.2
AL2G39540 Arabidopsis lyrata HOM05D006918 ORTHO05D008525 1.0e-06 59.7 142 27.5
Hma1.2p1_0631F.1_g192380 Hydrangea macrophylla HOM05D006556 ORTHO05D008146 1.0e-06 59.7 274 22.6
Hma1.2p1_0631F.1_g192390 Hydrangea macrophylla HOM05D006556 ORTHO05D008146 1.0e-06 59.7 274 22.6
Hma1.2p1_0631F.1_g192404 Hydrangea macrophylla HOM05D006556 ORTHO05D008146 1.0e-06 59.7 274 22.6
Atru.chr9.109 Acer truncatum HOM05D004783 ORTHO05D005581 1.3e-06 59.3 133 30.1
SalBow6G2874 Salvia bowleyana HOM05D004783 ORTHO05D005581 1.3e-06 59.3 148 24.3
TAR636G1403 Trochodendron aralioides HOM05D006918 ORTHO05D008525 1.3e-06 59.3 153 24.2
Thhalv10012473m.g Eutrema salsugineum HOM05D006569 ORTHO05D007515 1.7e-06 58.9 134 29.9
Aqoxy1G01532 Aquilegia oxysepala HOM05D004271 ORTHO05D006011 2.3e-06 58.5 105 32.4
ECA232G0714 Erigeron canadensis HOM05D004783 ORTHO05D005581 2.3e-06 58.5 150 26.0
AT1G79080 Arabidopsis thaliana HOM05D006918 ORTHO05D008525 3.0e-06 58.2 173 26.6
QL03p008874 Quercus lobata HOM05D004783 ORTHO05D005581 3.0e-06 58.2 178 23.0
CAN.G1360.18 Capsicum annuum HOM05D005674 ORTHO05D007015 3.9e-06 57.8 216 23.6
CARHR198030 Cardamine hirsuta HOM05D006569 ORTHO05D007515 3.9e-06 57.8 134 29.1
Aqoxy5G00466 Aquilegia oxysepala HOM05D004271 ORTHO05D006011 5.0e-06 57.4 105 32.4
C06p52950 Brassica napus HOM05D006918 ORTHO05D008525 8.6e-06 56.6 139 26.6
Lsat_1_v5_gn_2_97841 Lactuca sativa HOM05D007402 ORTHO05D003673 8.6e-06 56.6 113 31.0
Nitab4.5_0001130g0070 Nicotiana tabacum HOM05D000104 ORTHO05D009920 8.6e-06 56.6 113 28.3


User provided reference genes

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