Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g17110 Fragaria vesca HOM05D003955 ORTHO05D004684 0.0e+00 1153.7 610 100.0
FAN18G0775 Fragaria x ananassa HOM05D003955 ORTHO05D004684 0.0e+00 1149.0 610 99.2
FAN04G3226 Fragaria x ananassa HOM05D003955 ORTHO05D004684 0.0e+00 1117.8 621 95.8
FAN13G1787 Fragaria x ananassa HOM05D003955 ORTHO05D004684 0.0e+00 1117.4 621 96.0
FAN08G2535 Fragaria x ananassa HOM05D003955 ORTHO05D004684 0.0e+00 1116.3 619 96.0
RcHm_v2.0_Chr7g0178701 Rosa chinensis HOM05D003955 ORTHO05D004684 0.0e+00 1111.7 610 95.9
Prupe.5G230600 Prunus persica HOM05D003955 ORTHO05D004684 1.3e-292 1009.2 610 87.4
MD06G1229500 Malus domestica HOM05D003955 ORTHO05D004684 8.9e-289 996.5 609 85.4
MD14G1234400 Malus domestica HOM05D003955 ORTHO05D004684 4.4e-288 994.2 609 83.9
Cfa019689 Carpinus fangiana HOM05D003955 ORTHO05D004684 5.8e-288 993.8 609 83.9
CiPaw.15G139700 Carya illinoinensis HOM05D003955 ORTHO05D004684 2.9e-287 991.5 609 85.1
QL10p027883 Quercus lobata HOM05D003955 ORTHO05D004684 4.9e-287 990.7 609 84.6
Gorai.007G004500 Gossypium raimondii HOM05D003955 ORTHO05D004684 1.9e-286 988.8 610 80.2
Gohir.D11G003500 Gossypium hirsutum HOM05D003955 ORTHO05D004684 4.2e-286 987.6 610 80.0
Thecc.03G050300 Theobroma cacao HOM05D003955 ORTHO05D004684 4.2e-286 987.6 610 81.0
CANSAT80G2537 Cannabis sativa HOM05D003955 ORTHO05D004684 7.1e-286 986.9 610 80.7
GSVIVG01008399001 Vitis vinifera HOM05D003955 ORTHO05D004684 2.1e-285 985.3 610 82.5
Gohir.A11G004000 Gossypium hirsutum HOM05D003955 ORTHO05D004684 5.1e-284 980.7 610 80.3
TWI15G0606 Tripterygium wilfordii HOM05D003955 ORTHO05D004684 2.8e-282 974.9 606 77.1
Ciclev10007782m.g Citrus clementina HOM05D003955 ORTHO05D004684 4.7e-282 974.2 610 80.8
Cpa.g.sc3.440 Carica papaya HOM05D003955 ORTHO05D004684 4.4e-280 967.6 610 80.5
TAR622G0688 Trochodendron aralioides HOM05D003955 ORTHO05D004684 1.3e-279 966.1 610 78.5
CsaV3_1G004220 Cucumis sativus L. HOM05D003955 ORTHO05D004684 1.4e-278 962.6 609 78.2
Haze_18797 Corylus avellana HOM05D003955 ORTHO05D004684 1.2e-277 959.5 612 81.9
Manes.06G008300 Manihot esculenta HOM05D003955 ORTHO05D004684 1.6e-277 959.1 610 81.0
TAR374G0009 Trochodendron aralioides HOM05D003955 ORTHO05D004684 3.5e-277 958.0 610 81.1
MELO3C017347.2 Cucumis melo HOM05D003955 ORTHO05D004684 4.6e-277 957.6 609 77.8
Potri.012G049200 Populus trichocarpa HOM05D003955 ORTHO05D004684 7.8e-277 956.8 610 82.1
VMungo0251G3447 Vigna mungo HOM05D003955 ORTHO05D004684 1.0e-276 956.4 606 78.5
Glyma.05G243900 Glycine max HOM05D003955 ORTHO05D004684 3.0e-276 954.9 608 78.0
Sed0001638 Sechium edule HOM05D003955 ORTHO05D004684 5.1e-276 954.1 609 77.7
Ca_17215_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 1.1e-275 953.0 604 79.3
Ca_17217_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 1.1e-275 953.0 604 79.3
ClCG06G014440 Citrullus lanatus HOM05D003955 ORTHO05D004684 3.3e-275 951.4 601 77.5
Glyma.08G051900 Glycine max HOM05D003955 ORTHO05D004684 3.3e-275 951.4 606 78.4
Sed0014282 Sechium edule HOM05D003955 ORTHO05D004684 3.3e-275 951.4 609 77.2
Potri.015G041200 Populus trichocarpa HOM05D003955 ORTHO05D004684 4.3e-275 951.0 610 81.0
COL.COLO4_22318 Corchorus olitorius HOM05D003955 ORTHO05D004684 5.6e-275 950.7 637 75.5
Lalb_Chr05g0221841 Lupinus albus HOM05D003955 ORTHO05D004684 3.6e-274 948.0 606 77.9
vmacro16423 Vaccinium macrocarpon HOM05D003955 ORTHO05D004684 3.6e-274 948.0 611 80.0
Lj4g0027787 Lotus japonicus HOM05D003955 ORTHO05D004684 1.1e-273 946.4 605 77.4
Phvul.002G327600 Phaseolus vulgaris HOM05D003955 ORTHO05D004684 2.4e-273 945.3 606 79.7
Hma1.2p1_0669F.1_g200270 Hydrangea macrophylla HOM05D003955 ORTHO05D004684 3.1e-273 944.9 622 79.6
Migut.D01456 Erythranthe guttata HOM05D003955 ORTHO05D004684 6.9e-273 943.7 610 77.4
Sabra12G0034600 Salix brachista HOM05D003955 ORTHO05D004684 1.5e-272 942.6 623 76.6
TWI81G0555 Tripterygium wilfordii HOM05D003955 ORTHO05D004684 2.0e-272 942.2 595 76.3
Peaxi162Scf00683g00157 Petunia axillaris HOM05D003955 ORTHO05D004684 1.7e-271 939.1 609 80.6
MSTRG.9290 Avicennia marina HOM05D003955 ORTHO05D004684 2.2e-271 938.7 609 73.2
Rhsim12G0139700 Rhododendron simsii HOM05D003955 ORTHO05D004684 2.9e-271 938.3 611 79.7
PGSC0003DMG400005655 Solanum tuberosum HOM05D003955 ORTHO05D004684 3.8e-271 937.9 610 77.2
Psat7g000120 Pisum sativum HOM05D003955 ORTHO05D004684 6.4e-271 937.2 607 76.9
Nitab4.5_0001158g0090 Nicotiana tabacum HOM05D003955 ORTHO05D004684 1.9e-270 935.6 622 76.4
THA.LOC104820357 Tarenaya hassleriana HOM05D003955 ORTHO05D004684 1.9e-270 935.6 607 76.8
Sopen03g037980 Solanum pennellii HOM05D003955 ORTHO05D004684 4.2e-270 934.5 610 76.7
PGR083G2578 Punica granatum HOM05D003955 ORTHO05D004684 5.4e-270 934.1 608 78.3
Solyc03g119090.3 Solanum lycopersicum HOM05D003955 ORTHO05D004684 5.4e-270 934.1 610 76.9
Dinv05158 Davidia involucrata HOM05D003955 ORTHO05D004684 9.3e-270 933.3 611 76.4
CSS0005322 Camellia sinensis var. sinensis HOM05D003955 ORTHO05D004684 1.2e-269 932.9 610 77.9
Nitab4.5_0001644g0090 Nicotiana tabacum HOM05D003955 ORTHO05D004684 2.1e-269 932.2 633 74.9
Medtr8g106820 Medicago truncatula HOM05D003955 ORTHO05D004684 1.3e-268 929.5 606 77.6
SGA_v2.0_scaffold25G10972 Striga asiatica HOM05D003955 ORTHO05D004684 1.3e-268 929.5 610 76.6
Eucgr.K02263 Eucalyptus grandis HOM05D003955 ORTHO05D004684 8.7e-268 926.8 612 78.8
Aqoxy3G04013 Aquilegia oxysepala HOM05D003955 ORTHO05D004684 1.3e-266 922.9 610 78.0
Sabra15G0055900 Salix brachista HOM05D003955 ORTHO05D004684 1.6e-266 922.5 661 74.1
HanXRQChr10g0314661 Helianthus annuus HOM05D003955 ORTHO05D004684 5.3e-265 917.5 610 73.6
Dinv26502 Davidia involucrata HOM05D003955 ORTHO05D004684 6.9e-265 917.1 605 79.5
Sabra15G0063600 Salix brachista HOM05D003955 ORTHO05D004684 1.2e-264 916.4 616 78.2
Aa31LG8G4920 Aethionema arabicum HOM05D003955 ORTHO05D004684 9.9e-264 913.3 608 75.3
DCAR_014770 Daucus carota HOM05D003955 ORTHO05D004684 2.9e-263 911.8 609 74.2
Atru.chr11.420 Acer truncatum HOM05D003955 ORTHO05D004684 1.4e-262 909.4 610 75.2
Thhalv10020321m.g Eutrema salsugineum HOM05D003955 ORTHO05D004684 3.2e-262 908.3 609 75.2
Sp3g16180 Schrenkiella parvula HOM05D003955 ORTHO05D004684 3.2e-262 908.3 609 75.5
Lsat_1_v5_gn_5_91461 Lactuca sativa HOM05D003955 ORTHO05D004684 1.6e-261 906.0 611 73.3
PSO782G1387 Papaver somniferum HOM05D003955 ORTHO05D004684 6.0e-261 904.0 610 74.1
CARHR093380 Cardamine hirsuta HOM05D003955 ORTHO05D004684 7.9e-261 903.7 609 74.7
PSO063G1948 Papaver somniferum HOM05D003955 ORTHO05D004684 7.4e-259 897.1 610 74.1
AUR62014196 Chenopodium quinoa HOM05D003955 ORTHO05D004684 1.3e-258 896.3 607 71.7
AUR62041238 Chenopodium quinoa HOM05D003955 ORTHO05D004684 1.3e-258 896.3 607 73.5
Manes.15G126700 Manihot esculenta HOM05D003955 ORTHO05D004684 2.8e-258 895.2 610 73.9
ECA234G1883 Erigeron canadensis HOM05D003955 ORTHO05D004684 3.7e-258 894.8 593 74.4
Carub.0003s1778 Capsella rubella HOM05D003955 ORTHO05D004684 4.8e-258 894.4 609 73.9
DCAR_023230 Daucus carota HOM05D003955 ORTHO05D004684 4.8e-258 894.4 610 71.6
COL.COLO4_20464 Corchorus olitorius HOM05D003955 ORTHO05D004684 5.3e-257 891.0 610 70.5
BolC5t33552H Brassica oleracea HOM05D003955 ORTHO05D004684 6.9e-257 890.6 608 74.3
CDE04G0774 Ceratophyllum demersum HOM05D003955 ORTHO05D004684 9.0e-257 890.2 611 75.1
AT3G18060 Arabidopsis thaliana HOM05D003955 ORTHO05D004684 1.2e-256 889.8 609 74.1
Lj2A556T29 Lonicera japonica HOM05D003955 ORTHO05D004684 1.5e-256 889.4 608 75.7
AL3G31220 Arabidopsis lyrata HOM05D003955 ORTHO05D004684 7.6e-256 887.1 609 73.7
C05p48110 Brassica napus HOM05D003955 ORTHO05D004684 1.0e-255 886.7 608 74.0
A05p31710 Brassica napus HOM05D003955 ORTHO05D004684 3.8e-255 884.8 608 73.8
BraA05t22004Z Brassica rapa HOM05D003955 ORTHO05D004684 3.8e-255 884.8 608 73.8
Sc11g0004100 Simmondsia chinensis HOM05D003955 ORTHO05D004684 1.1e-254 883.2 610 73.4
Cpa.g.sc211.2 Carica papaya HOM05D003955 ORTHO05D004684 1.9e-254 882.5 611 74.0
Ciclev10014635m.g Citrus clementina HOM05D003955 ORTHO05D004684 3.2e-254 881.7 608 73.4
Medtr1g107560 Medicago truncatula HOM05D003955 ORTHO05D004684 4.2e-254 881.3 610 69.0
Gorai.002G180400 Gossypium raimondii HOM05D003955 ORTHO05D004684 1.6e-253 879.4 610 68.5
arahy.Tifrunner.gnm1.ann1.I5E1T8 Arachis hypogaea HOM05D003955 ORTHO05D004684 1.3e-252 876.3 610 70.3
Lj5g0018825 Lotus japonicus HOM05D003955 ORTHO05D004684 8.7e-252 873.6 607 72.7
Glyma.20G126400 Glycine max HOM05D003955 ORTHO05D004684 1.1e-251 873.2 611 70.4
VMungo0720G1874 Vigna mungo HOM05D003955 ORTHO05D004684 5.7e-251 870.9 611 71.7
arahy.Tifrunner.gnm1.ann1.MW1RK6 Arachis hypogaea HOM05D003955 ORTHO05D004684 2.8e-250 868.6 623 69.0
ATR0686G116 Amborella trichopoda HOM05D003955 ORTHO05D004684 8.2e-250 867.1 612 71.9
Psat6g220280 Pisum sativum HOM05D003955 ORTHO05D004684 1.5e-248 862.8 610 70.3
TPR.G13862 Trifolium pratense HOM05D003955 ORTHO05D004684 2.0e-248 862.4 610 70.0
Hund24990 Selenicereus undatus HOM05D003955 ORTHO05D004684 6.5e-247 857.4 682 63.2
Lj6A27G8 Lonicera japonica HOM05D003955 ORTHO05D004684 1.4e-246 856.3 690 67.5
Oeu061232.2 Olea europaea HOM05D003955 ORTHO05D004684 7.2e-246 854.0 688 63.1
Phvul.007G038100 Phaseolus vulgaris HOM05D003955 ORTHO05D004684 7.2e-246 854.0 611 70.4
Zm00001eb334960 Zea mays HOM05D003955 ORTHO05D004684 1.2e-245 853.2 607 68.7
unitig_899.g15402 Utricularia gibba HOM05D003955 ORTHO05D004684 6.1e-245 850.9 604 70.0
Os01g0125800 Oryza sativa ssp. japonica HOM05D003955 ORTHO05D004684 3.0e-244 848.6 611 67.8
Zm00001eb125700 Zea mays HOM05D003955 ORTHO05D004684 6.7e-244 847.4 611 68.1
EL10Ac6g14239 Beta vulgaris HOM05D003955 ORTHO05D004684 1.3e-242 843.2 592 71.1
Nn4g24112 Nelumbo nucifera HOM05D003955 ORTHO05D004684 1.4e-238 829.7 563 76.6
Sp2g12780 Schrenkiella parvula HOM05D003955 ORTHO05D004684 1.4e-238 829.7 613 70.6
AL5G10290 Arabidopsis lyrata HOM05D003955 ORTHO05D004684 3.2e-238 828.6 613 69.7
CARHR143850 Cardamine hirsuta HOM05D003955 ORTHO05D004684 3.2e-238 828.6 613 69.2
Thhalv10000821m.g Eutrema salsugineum HOM05D003955 ORTHO05D004684 7.2e-238 827.4 613 71.3
Carub.0005s0030 Capsella rubella HOM05D003955 ORTHO05D004684 1.0e-236 823.5 613 68.8
BcaC04g21593 Brassica carinata HOM05D003955 ORTHO05D004684 1.8e-236 822.8 613 68.7
C09p30050 Brassica napus HOM05D003955 ORTHO05D004684 3.9e-236 821.6 618 68.3
BolC9t55869H Brassica oleracea HOM05D003955 ORTHO05D004684 3.9e-236 821.6 618 68.3
Ah.03g138590 Amaranthus hybridus HOM05D003955 ORTHO05D004684 1.1e-235 820.1 608 69.1
Aa31LG2G8590 Aethionema arabicum HOM05D003955 ORTHO05D004684 7.4e-235 817.4 645 65.3
A09p23310 Brassica napus HOM05D003955 ORTHO05D004684 7.4e-235 817.4 618 68.0
BraA09t37932Z Brassica rapa HOM05D003955 ORTHO05D004684 1.7e-234 816.2 618 67.8
AT2G01330 Arabidopsis thaliana HOM05D003955 ORTHO05D004684 2.2e-234 815.8 613 68.7
BcaB07g30749 Brassica carinata HOM05D003955 ORTHO05D004684 1.1e-233 813.5 613 68.4
THA.LOC104823875 Tarenaya hassleriana HOM05D003955 ORTHO05D004684 1.4e-233 813.1 611 68.1
Actinidia18907 Actinidia chinensis HOM05D003955 ORTHO05D004684 1.1e-227 793.5 608 67.8
Gohir.D01G099700 Gossypium hirsutum HOM05D003955 ORTHO05D004684 8.2e-226 787.3 524 74.0
Gohir.A01G153300 Gossypium hirsutum HOM05D003955 ORTHO05D004684 1.4e-225 786.6 524 73.9
TPR.G12969 Trifolium pratense HOM05D003955 ORTHO05D004684 4.5e-200 701.8 471 78.6
Hund20686 Selenicereus undatus HOM05D003955 ORTHO05D004684 1.5e-195 686.8 478 71.8
Pp3c3_9960 Physcomitrium patens HOM05D003955 ORTHO05D004684 9.8e-195 684.1 606 56.8
Mapoly0025s0096 Marchantia polymorpha HOM05D003955 ORTHO05D004684 2.7e-184 649.4 612 51.5
Actinidia35113 Actinidia chinensis HOM05D003955 ORTHO05D004684 6.6e-183 644.8 415 79.5
Cc04_g06570 Coffea canephora HOM05D003955 ORTHO05D004684 1.7e-175 620.2 385 81.3
AagrBONN_evm.TU.Sc2ySwM_340.157 Anthoceros agrestis HOM05D003955 ORTHO05D004684 3.9e-167 592.4 611 55.3
SMO298G0047 Selaginella moellendorffii HOM05D003955 ORTHO05D004684 4.8e-165 585.5 609 49.3
Thecc.02G279800 Theobroma cacao HOM05D003955 ORTHO05D004684 2.0e-163 580.1 426 70.0
Lalb_Chr06g0165551 Lupinus albus HOM05D003955 ORTHO05D004684 8.4e-154 548.1 427 67.9
HPP92_000152 Vanilla planifolia HOM05D003955 ORTHO05D004684 1.8e-143 513.8 480 57.9
BolC5t33521H Brassica oleracea HOM05D003955 ORTHO05D004684 3.2e-121 439.9 324 66.7
Atru.chr9.1765 Acer truncatum HOM05D003955 ORTHO05D004684 1.0e-119 434.9 283 75.3
CBR_g51409 Chara braunii HOM05D003955 ORTHO05D004684 2.6e-118 430.3 486 54.3
Oeu031790.1 Olea europaea HOM05D003955 ORTHO05D004684 2.2e-117 427.2 353 59.8
SEGI_26510 Sequoiadendron giganteum HOM05D003955 ORTHO05D004684 7.2e-113 412.1 350 60.9
MCO02G121 Micromonas commoda HOM05D003955 ORTHO05D004684 8.0e-96 355.5 647 36.5
Lalb_Chr06g0165541 Lupinus albus HOM05D003955 ORTHO05D004684 1.6e-91 341.3 185 84.3
PRCOL_00004882 Prasinoderma coloniale HOM05D003955 ORTHO05D004684 2.5e-89 334.0 621 40.3
Cc04_g06580 Coffea canephora HOM05D003955 ORTHO05D004684 2.4e-84 317.4 222 73.4
Haze_27019 Corylus avellana HOM05D003955 ORTHO05D004684 5.8e-78 296.2 506 37.2
Zm00001eb337090 Zea mays HOM05D003955 ORTHO05D004684 4.6e-67 260.0 166 83.7
Zm00001eb396840 Zea mays HOM05D003955 ORTHO05D004684 1.7e-66 258.1 166 81.9
Zm00001eb287030 Zea mays HOM05D003955 ORTHO05D004684 4.3e-65 253.4 164 83.5
Zm00001eb076360 Zea mays HOM05D003955 ORTHO05D004684 2.8e-64 250.8 164 82.9
Ca_27465_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 5.1e-58 229.9 131 81.7
TPR.G12747 Trifolium pratense HOM05D003955 ORTHO05D004684 8.6e-58 229.2 130 80.0
Hund20688 Selenicereus undatus HOM05D003955 ORTHO05D004684 6.2e-56 223.0 131 80.9
BcaC05g28709 Brassica carinata HOM05D003955 ORTHO05D004684 2.4e-55 221.1 128 79.7
Atru.chr9.1764 Acer truncatum HOM05D003955 ORTHO05D004684 1.5e-54 218.4 171 70.2
Oeu031786.1 Olea europaea HOM05D003955 ORTHO05D004684 6.9e-47 193.0 131 74.0
RcHm_v2.0_Chr5g0062751 Rosa chinensis HOM05D003955 ORTHO05D004684 6.2e-40 169.9 99 83.8
BcaB03g13114 Brassica carinata HOM05D003955 ORTHO05D030800 9.3e-36 156.0 161 50.9
Zm00001eb221950 Zea mays HOM05D003955 ORTHO05D004684 3.3e-25 120.9 95 60.0
Oeu013618.1 Olea europaea HOM05D003955 ORTHO05D004684 9.6e-25 119.4 131 51.1
Atru.chr5.1031 Acer truncatum HOM05D003955 ORTHO05D030800 2.2e-21 108.2 81 64.2
BcaB07g32970 Brassica carinata HOM05D003955 ORTHO05D004684 1.4e-20 105.5 182 37.4
Zm00001eb369430 Zea mays HOM05D003955 ORTHO05D004684 5.1e-18 97.1 54 79.6
Actinidia37891 Actinidia chinensis HOM05D003955 ORTHO05D030800 1.1e-17 95.9 221 31.7
RcHm_v2.0_Chr6g0266701 Rosa chinensis HOM05D003955 ORTHO05D004684 9.7e-17 92.8 73 64.4
RcHm_v2.0_Chr6g0295791 Rosa chinensis HOM05D003955 ORTHO05D004684 4.8e-16 90.5 73 63.0
Actinidia37893 Actinidia chinensis HOM05D003955 ORTHO05D004684 1.5e-14 85.5 53 73.6
FvH4_5g16561 Fragaria vesca HOM05D020439 ORTHO05D035355 2.1e-11 75.1 49 69.4
Zm00001eb265330 Zea mays HOM05D003955 ORTHO05D004684 1.8e-10 72.0 59 59.3
COL.COLO4_22316 Corchorus olitorius HOM05D003955 ORTHO05D004684 5.7e-09 67.0 49 65.3
Aa31LG3G10470 Aethionema arabicum HOM05D002303 ORTHO05D007639 3.4e-06 57.8 219 20.1
DCAR_030291 Daucus carota HOM05D001610 ORTHO05D001585 5.9e-06 57.0 178 25.8
Carub.0008s1480 Capsella rubella HOM05D002303 ORTHO05D007639 7.7e-06 56.6 178 26.4


User provided reference genes

Program Settings