Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 0.0e+00 1183.7 607 100.0
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 0.0e+00 1177.5 604 99.8
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 0.0e+00 1116.3 617 94.0
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 0.0e+00 1108.2 604 94.0
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 0.0e+00 1093.2 602 94.9
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.1e-302 1041.2 563 96.1
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 8.3e-295 1016.5 605 86.0
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 3.0e-292 1008.1 605 84.3
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 1.9e-291 1005.4 591 85.8
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 1.9e-283 978.8 591 83.9
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 2.8e-282 974.9 592 83.8
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 4.7e-282 974.2 605 82.5
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 8.3e-279 963.4 597 82.1
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 1.1e-278 963.0 591 83.1
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 4.1e-278 961.1 598 81.9
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 5.4e-278 960.7 629 79.2
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 5.4e-278 960.7 606 80.4
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 2.5e-275 951.8 597 81.2
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 1.1e-273 946.4 592 81.2
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 4.4e-272 941.0 597 80.7
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 4.4e-272 941.0 606 79.5
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 4.9e-271 937.6 598 80.1
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 6.4e-271 937.2 605 78.7
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 2.7e-269 931.8 605 78.3
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 7.8e-269 930.2 606 79.2
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 5.6e-267 924.1 606 77.7
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 7.3e-267 923.7 592 79.4
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 3.6e-266 921.4 605 78.0
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 6.2e-266 920.6 592 79.2
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 8.1e-266 920.2 592 78.5
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 2.4e-265 918.7 606 77.6
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 4.0e-265 917.9 592 78.5
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 6.9e-265 917.1 606 77.6
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 9.0e-265 916.8 590 77.6
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 5.8e-264 914.1 604 76.5
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 1.7e-263 912.5 612 77.6
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 2.9e-263 911.8 592 77.9
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 4.9e-263 911.0 597 77.1
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 8.4e-263 910.2 567 81.0
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 1.4e-262 909.4 592 77.7
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 1.4e-262 909.4 593 78.1
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 1.2e-261 906.4 593 78.4
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 6.0e-261 904.0 607 75.6
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 7.8e-261 903.7 604 77.0
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 1.3e-260 902.9 606 76.1
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 2.3e-260 902.1 606 76.4
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 2.3e-260 902.1 591 77.2
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 8.7e-260 900.2 607 75.8
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 1.5e-259 899.4 607 75.3
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 1.9e-259 899.0 605 76.2
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 1.9e-259 899.0 641 73.0
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 2.5e-259 898.7 593 77.4
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 3.3e-259 898.3 594 76.1
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 3.3e-259 898.3 605 77.5
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 2.1e-258 895.6 593 76.1
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 2.8e-258 895.2 599 76.6
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 2.8e-258 895.2 607 74.6
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 4.8e-258 894.4 607 74.5
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 4.8e-258 894.4 607 74.3
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.8e-257 892.5 600 76.5
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 1.8e-257 892.5 607 74.6
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 2.4e-257 892.1 600 75.0
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 6.9e-257 890.6 599 76.5
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 9.0e-257 890.2 606 74.4
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 1.5e-256 889.4 592 75.8
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 2.6e-256 888.6 605 74.7
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 1.7e-255 885.9 592 74.5
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 1.7e-255 885.9 592 75.3
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 4.9e-255 884.4 605 74.0
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 4.9e-255 884.4 605 74.0
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 4.9e-255 884.4 605 74.0
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 6.4e-255 884.0 605 74.0
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 6.4e-255 884.0 600 76.0
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 8.4e-255 883.6 579 78.2
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 1.1e-254 883.2 591 74.8
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 1.4e-254 882.9 605 73.9
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 2.4e-254 882.1 593 76.4
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 2.4e-254 882.1 592 74.8
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 4.2e-254 881.3 598 77.9
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 5.4e-254 880.9 612 74.3
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 9.3e-254 880.2 606 75.6
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 9.3e-254 880.2 606 75.2
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 4.6e-253 877.9 605 73.7
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 1.0e-252 876.7 593 74.5
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 8.7e-252 873.6 595 73.6
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 2.5e-251 872.1 673 69.4
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 4.3e-251 871.3 601 75.2
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 9.6e-251 870.2 594 75.8
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 9.6e-251 870.2 649 70.9
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 1.3e-250 869.8 601 73.9
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 4.8e-250 867.8 592 73.8
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 8.1e-250 867.1 600 73.7
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 1.8e-249 865.9 594 76.3
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 4.5e-248 861.3 575 77.4
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 4.9e-247 857.8 551 78.8
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 4.2e-246 854.7 627 70.5
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 1.2e-245 853.2 567 75.8
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 2.3e-244 849.0 593 72.7
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 3.0e-244 848.6 593 72.5
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 1.6e-242 842.8 592 71.3
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 4.9e-239 831.2 547 77.1
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 1.4e-238 829.7 548 77.4
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 3.5e-237 825.1 591 72.8
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 2.3e-236 822.4 595 71.9
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 9.7e-235 817.0 591 72.4
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 7.2e-230 800.8 609 69.1
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 1.5e-224 783.1 631 67.2
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 8.5e-223 777.3 647 62.8
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 3.2e-222 775.4 594 68.0
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 1.7e-218 763.1 601 65.2
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 1.4e-217 760.0 484 80.6
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 5.5e-214 748.0 600 63.2
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 6.1e-213 744.6 592 65.5
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 2.0e-211 739.6 484 77.1
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 2.0e-211 739.6 502 74.9
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 4.8e-210 734.9 494 76.3
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.0e-196 690.6 548 67.7
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 1.3e-186 657.1 434 76.5
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 9.8e-179 630.9 440 74.5
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 4.9e-178 628.6 534 68.4
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 3.2e-177 625.9 502 66.7
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 6.4e-170 601.7 576 54.2
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 9.2e-169 597.8 610 52.1
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 2.5e-166 589.7 602 51.5
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 5.1e-159 565.5 435 65.3
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 4.8e-149 532.3 340 80.3
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 1.0e-143 514.6 366 72.7
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 9.3e-137 491.5 614 45.4
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 3.5e-136 489.6 418 61.2
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 7.4e-126 455.3 573 43.5
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.5e-123 447.6 286 80.8
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.7e-122 444.1 332 69.6
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 1.0e-114 418.3 240 85.8
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 2.9e-106 390.2 280 73.2
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 7.4e-102 375.6 437 49.4
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 1.0e-90 338.6 315 56.5
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 6.8e-87 325.9 274 62.8
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 9.5e-73 278.9 173 82.1
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 3.6e-72 276.9 685 31.4
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 8.9e-71 272.3 535 35.7
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 7.5e-62 242.7 160 76.9
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 5.0e-58 229.9 148 80.4
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 1.5e-57 228.4 139 82.7
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 9.9e-46 189.1 149 69.8
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.4e-44 185.3 107 86.9
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 5.2e-39 166.8 616 26.8
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 2.1e-32 144.8 96 74.0
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 6.9e-31 139.8 120 55.8
AagrBONN_evm.TU.Sc2ySwM_228.1280 Anthoceros agrestis HOM05D004329 ORTHO05D005516 4.6e-27 127.1 186 41.4
C02p61790 Brassica napus HOM05D004329 ORTHO05D005516 1.5e-25 122.1 97 63.9
CARHR275770 Cardamine hirsuta HOM05D004329 ORTHO05D005516 3.1e-23 114.4 97 56.7
Haze_22596 Corylus avellana HOM05D004329 ORTHO05D010424 2.9e-21 107.8 71 70.4
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 2.4e-20 104.8 66 77.3
Cfa027290 Carpinus fangiana HOM05D004329 ORTHO05D121551 3.0e-18 97.8 487 25.5
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 3.9e-18 97.4 78 57.7
CAN.G865.5 Capsicum annuum HOM05D004329 ORTHO05D005516 1.5e-17 95.5 67 62.7
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 1.6e-16 92.0 49 89.8
Lsat_1_v5_gn_2_122301 Lactuca sativa HOM05D009063 ORTHO05D011082 3.7e-16 90.9 223 34.5
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 8.1e-16 89.7 48 89.6
CSS0048280 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 7.6e-14 83.2 99 47.5
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 2.2e-13 81.6 71 52.1
Hund31053 Selenicereus undatus HOM05D004329 ORTHO05D026010 1.3e-10 72.4 45 82.2
Hund31064 Selenicereus undatus HOM05D004329 ORTHO05D026010 1.3e-10 72.4 45 82.2
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 6.7e-10 70.1 59 62.7
Solyc04g048930.1 Solanum lycopersicum HOM05D004329 ORTHO05D026010 2.0e-06 58.5 52 57.7
COL.COLO4_03746 Corchorus olitorius HOM05D004329 ORTHO05D155270 5.9e-06 57.0 29 86.2


User provided reference genes

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