Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g06081 Fragaria vesca HOM05D003157 ORTHO05D012168 7.2e-116 420.6 217 100.0
FAN18G2478 Fragaria x ananassa HOM05D003157 ORTHO05D012168 1.8e-114 416.0 217 99.1
FAN08G3352 Fragaria x ananassa HOM05D003157 ORTHO05D012168 3.1e-111 405.2 218 93.1
FAN13G2541 Fragaria x ananassa HOM05D003157 ORTHO05D012168 3.6e-107 391.7 218 95.0
FAN04G1049 Fragaria x ananassa HOM05D003157 ORTHO05D012168 5.5e-100 367.9 204 95.6
RcHm_v2.0_Chr7g0192771 Rosa chinensis HOM05D003157 ORTHO05D012168 4.9e-88 328.2 217 78.8
Prupe.5G165900 Prunus persica HOM05D003157 ORTHO05D012168 7.6e-49 198.0 224 51.8
MD06G1166000 Malus domestica HOM05D003157 ORTHO05D012168 1.8e-34 150.2 202 45.0
Prupe.5G165800 Prunus persica HOM05D003157 ORTHO05D004447 2.2e-24 116.7 395 29.9
QL10p006899 Quercus lobata HOM05D003157 ORTHO05D004447 6.7e-21 105.1 109 58.7
Potri.015G084000 Populus trichocarpa HOM05D003157 ORTHO05D004447 5.7e-20 102.1 100 56.0
RcHm_v2.0_Chr7g0192591 Rosa chinensis HOM05D003157 ORTHO05D004447 7.4e-20 101.7 363 26.4
Manes.14G060700 Manihot esculenta HOM05D003157 ORTHO05D004447 9.7e-20 101.3 109 52.3
Atru.chr9.2574 Acer truncatum HOM05D003157 ORTHO05D004447 1.6e-19 100.5 100 54.0
FvH4_5g06270 Fragaria vesca HOM05D003157 ORTHO05D004447 4.8e-19 99.0 99 55.6
Ciclev10024152m.g Citrus clementina HOM05D003157 ORTHO05D004447 6.3e-19 98.6 177 39.0
GSVIVG01007647001 Vitis vinifera HOM05D003157 ORTHO05D004447 6.3e-19 98.6 100 54.0
Potri.012G085700 Populus trichocarpa HOM05D003157 ORTHO05D004447 8.2e-19 98.2 109 52.3
Eucgr.K02800 Eucalyptus grandis HOM05D003157 ORTHO05D004447 1.8e-18 97.1 183 37.7
Thecc.03G025700 Theobroma cacao HOM05D003157 ORTHO05D004447 1.8e-18 97.1 109 52.3
MD06G1165900 Malus domestica HOM05D003157 ORTHO05D004447 2.4e-18 96.7 107 52.3
FAN04G1965 Fragaria x ananassa HOM05D003157 ORTHO05D004447 3.1e-18 96.3 99 54.5
Manes.06G110100 Manihot esculenta HOM05D003157 ORTHO05D004447 3.1e-18 96.3 109 49.5
Sabra15G0107200 Salix brachista HOM05D003157 ORTHO05D004447 5.3e-18 95.5 108 49.1
Actinidia08960 Actinidia chinensis HOM05D003157 ORTHO05D004447 1.5e-17 94.0 100 53.0
Sabra12G0061600 Salix brachista HOM05D003157 ORTHO05D004447 2.0e-17 93.6 109 51.4
Phvul.003G205000 Phaseolus vulgaris HOM05D003157 ORTHO05D004447 2.6e-17 93.2 99 51.5
Glyma.05G041600 Glycine max HOM05D003157 ORTHO05D004447 3.4e-17 92.8 99 51.5
Gohir.A11G040300 Gossypium hirsutum HOM05D003157 ORTHO05D004447 1.0e-16 91.3 101 51.5
Gohir.D11G043500 Gossypium hirsutum HOM05D003157 ORTHO05D004447 1.0e-16 91.3 101 51.5
Gorai.007G046900 Gossypium raimondii HOM05D003157 ORTHO05D004447 1.0e-16 91.3 101 51.5
MD14G1171800 Malus domestica HOM05D003157 ORTHO05D004447 1.0e-16 91.3 104 51.0
CSS0041144 Camellia sinensis var. sinensis HOM05D003157 ORTHO05D004447 1.3e-16 90.9 100 49.0
Lalb_Chr13g0297581 Lupinus albus HOM05D003157 ORTHO05D004447 1.3e-16 90.9 107 47.7
VMungo1215G0567 Vigna mungo HOM05D003157 ORTHO05D004447 1.7e-16 90.5 99 49.5
CANSAT80G2678 Cannabis sativa HOM05D003157 ORTHO05D004447 2.2e-16 90.1 106 45.3
PGR044G1972 Punica granatum HOM05D003157 ORTHO05D004447 2.2e-16 90.1 100 50.0
Solyc06g071770.4 Solanum lycopersicum HOM05D003157 ORTHO05D004447 2.2e-16 90.1 101 49.5
Sopen06g028060 Solanum pennellii HOM05D003157 ORTHO05D004447 2.2e-16 90.1 107 48.6
FAN13G0746 Fragaria x ananassa HOM05D003157 ORTHO05D004447 2.9e-16 89.7 348 27.6
Gohir.D03G106700 Gossypium hirsutum HOM05D003157 ORTHO05D004447 2.9e-16 89.7 109 49.5
Gorai.003G115800 Gossypium raimondii HOM05D003157 ORTHO05D004447 2.9e-16 89.7 109 49.5
Glyma.17G084700 Glycine max HOM05D003157 ORTHO05D004447 3.8e-16 89.4 99 49.5
Dinv20600 Davidia involucrata HOM05D003157 ORTHO05D004447 5.0e-16 89.0 100 50.0
Gohir.A03G056900 Gossypium hirsutum HOM05D003157 ORTHO05D004447 5.0e-16 89.0 109 48.6
CiPaw.11G019800 Carya illinoinensis HOM05D003157 ORTHO05D004447 8.5e-16 88.2 97 48.5
Rhsim12G0167900 Rhododendron simsii HOM05D003157 ORTHO05D004447 8.5e-16 88.2 108 45.4
TAR629G0508 Trochodendron aralioides HOM05D003157 ORTHO05D004447 8.5e-16 88.2 100 50.0
vmacro19300 Vaccinium macrocarpon HOM05D003157 ORTHO05D004447 8.5e-16 88.2 105 46.7
Medtr4g104880 Medicago truncatula HOM05D003157 ORTHO05D004447 1.1e-15 87.8 96 49.0
Lalb_Chr07g0182971 Lupinus albus HOM05D003157 ORTHO05D004447 1.4e-15 87.4 107 47.7
Nitab4.5_0008713g0020 Nicotiana tabacum HOM05D003157 ORTHO05D004447 1.4e-15 87.4 107 46.7
TWI14G1342 Tripterygium wilfordii HOM05D003157 ORTHO05D004447 1.4e-15 87.4 107 45.8
vmacro16645 Vaccinium macrocarpon HOM05D003157 ORTHO05D004447 1.4e-15 87.4 108 45.4
Cpa.g.sc159.27 Carica papaya HOM05D003157 ORTHO05D004447 2.5e-15 86.7 81 54.3
Lj4g0014353 Lotus japonicus HOM05D003157 ORTHO05D004447 3.2e-15 86.3 100 49.0
CAN.G993.20 Capsicum annuum HOM05D003157 ORTHO05D004447 5.5e-15 85.5 103 47.6
TWI23G0818 Tripterygium wilfordii HOM05D003157 ORTHO05D004447 9.4e-15 84.7 107 46.7
TAR371G0612 Trochodendron aralioides HOM05D003157 ORTHO05D004447 9.4e-15 84.7 82 54.9
Psat4g060880 Pisum sativum HOM05D003157 ORTHO05D004447 1.2e-14 84.3 99 46.5
Ca_14277_v3 Cicer arietinum L. HOM05D003157 ORTHO05D004447 1.6e-14 84.0 99 49.5
ClCG01G013500 Citrullus lanatus HOM05D003157 ORTHO05D004447 2.1e-14 83.6 100 48.0
Lalb_Chr12g0201891 Lupinus albus HOM05D003157 ORTHO05D004447 2.1e-14 83.6 99 48.5
Rhsim08G0177500 Rhododendron simsii HOM05D003157 ORTHO05D004447 2.1e-14 83.6 111 44.1
A08p21390 Brassica napus HOM05D003157 ORTHO05D004447 2.7e-14 83.2 294 28.2
Actinidia08033 Actinidia chinensis HOM05D000048 ORTHO05D004447 4.6e-14 82.4 90 48.9
Actinidia24597 Actinidia chinensis HOM05D003157 ORTHO05D004447 4.6e-14 82.4 90 48.9
CDE02G1794 Ceratophyllum demersum HOM05D003157 ORTHO05D004447 4.6e-14 82.4 85 49.4
FAN08G1011 Fragaria x ananassa HOM05D003157 ORTHO05D004447 4.6e-14 82.4 84 52.4
BraA08t34089Z Brassica rapa HOM05D003157 ORTHO05D004447 6.1e-14 82.0 287 27.9
Nitab4.5_0000003g0820 Nicotiana tabacum HOM05D003157 ORTHO05D004447 1.0e-13 81.3 107 44.9
PGSC0003DMG400027073 Solanum tuberosum HOM05D003157 ORTHO05D004447 1.0e-13 81.3 135 40.7
BcaB03g12442 Brassica carinata HOM05D003157 ORTHO05D004447 1.4e-13 80.9 281 28.1
Hund02785 Selenicereus undatus HOM05D003157 ORTHO05D004447 1.8e-13 80.5 105 43.8
CDE04G2303 Ceratophyllum demersum HOM05D003157 ORTHO05D004447 2.3e-13 80.1 100 45.0
Sed0005003 Sechium edule HOM05D003157 ORTHO05D004447 2.3e-13 80.1 85 47.1
Haze_07584 Corylus avellana HOM05D003157 ORTHO05D004447 3.0e-13 79.7 86 52.3
Cfa019214 Carpinus fangiana HOM05D003157 ORTHO05D004447 3.9e-13 79.3 95 48.4
PGSC0003DMG400018122 Solanum tuberosum HOM05D003157 ORTHO05D004447 3.9e-13 79.3 213 32.4
TPR.G37494 Trifolium pratense HOM05D003157 ORTHO05D004447 5.1e-13 79.0 99 43.4
CsaV3_1G008830 Cucumis sativus L. HOM05D003157 ORTHO05D004447 6.7e-13 78.6 109 42.2
Medtr4g104900 Medicago truncatula HOM05D003157 ORTHO05D012168 8.8e-13 78.2 94 43.6
MELO3C002297.2 Cucumis melo HOM05D003157 ORTHO05D004447 1.1e-12 77.8 109 42.2
CARHR232070 Cardamine hirsuta HOM05D003157 ORTHO05D004447 1.5e-12 77.4 295 25.8
SHI17273 Sapria himalayana HOM05D003157 ORTHO05D004447 1.5e-12 77.4 89 41.6
Sp7g22680 Schrenkiella parvula HOM05D003157 ORTHO05D004447 1.5e-12 77.4 82 50.0
Solyc03g112230.4 Solanum lycopersicum HOM05D003157 ORTHO05D004447 1.5e-12 77.4 213 33.8
arahy.Tifrunner.gnm1.ann1.UDW2C6 Arachis hypogaea HOM05D003157 ORTHO05D004447 2.0e-12 77.0 91 48.4
A01p16030 Brassica napus HOM05D003157 ORTHO05D004447 2.0e-12 77.0 291 28.2
Oeu020884.3 Olea europaea HOM05D003157 ORTHO05D004447 2.0e-12 77.0 93 48.4
Oeu040857.2 Olea europaea HOM05D003157 ORTHO05D004447 2.0e-12 77.0 107 43.9
Peaxi162Scf00763g00430 Petunia axillaris HOM05D003157 ORTHO05D004447 2.0e-12 77.0 91 45.1
AUR62028729 Chenopodium quinoa HOM05D003157 ORTHO05D004447 2.6e-12 76.6 101 44.6
BolC1t01929H Brassica oleracea HOM05D003157 ORTHO05D004447 3.3e-12 76.3 295 27.8
ClCG03G002990 Citrullus lanatus HOM05D003157 ORTHO05D004447 3.3e-12 76.3 82 51.2
DCAR_026172 Daucus carota HOM05D003157 ORTHO05D004447 3.3e-12 76.3 75 52.0
Sopen03g031330 Solanum pennellii HOM05D003157 ORTHO05D004447 3.3e-12 76.3 213 31.9
ATR0824G119 Amborella trichopoda HOM05D003157 ORTHO05D004447 5.7e-12 75.5 98 43.9
arahy.Tifrunner.gnm1.ann1.RZMV9E Arachis hypogaea HOM05D003157 ORTHO05D004447 7.4e-12 75.1 91 46.2
COL.COLO4_24272 Corchorus olitorius HOM05D003157 ORTHO05D004447 7.4e-12 75.1 103 43.7
BcaC07g38161 Brassica carinata HOM05D003157 ORTHO05D004447 9.7e-12 74.7 303 26.4
C07p53750 Brassica napus HOM05D003157 ORTHO05D004447 9.7e-12 74.7 95 44.2
Lj5A130T68 Lonicera japonica HOM05D003157 ORTHO05D004447 9.7e-12 74.7 84 47.6
Nitab4.5_0001793g0010 Nicotiana tabacum HOM05D003157 ORTHO05D004447 9.7e-12 74.7 107 43.0
Nitab4.5_0010452g0010 Nicotiana tabacum HOM05D003157 ORTHO05D004447 9.7e-12 74.7 107 43.0
Aqoxy3G01217 Aquilegia oxysepala HOM05D003157 ORTHO05D004447 1.3e-11 74.3 103 40.8
BcaC09g50840 Brassica carinata HOM05D003157 ORTHO05D004447 1.3e-11 74.3 295 28.5
BraA01t01537Z Brassica rapa HOM05D003157 ORTHO05D004447 1.7e-11 73.9 291 27.8
AUR62008147 Chenopodium quinoa HOM05D003157 ORTHO05D004447 1.7e-11 73.9 200 30.5
Thhalv10024557m.g Eutrema salsugineum HOM05D003157 ORTHO05D004447 2.2e-11 73.6 79 48.1
CAN.G338.32 Capsicum annuum HOM05D003157 ORTHO05D004447 2.8e-11 73.2 97 44.3
Cc04_g11550 Coffea canephora HOM05D003157 ORTHO05D004447 2.8e-11 73.2 97 43.3
AT4G24690 Arabidopsis thaliana HOM05D003157 ORTHO05D004447 3.7e-11 72.8 93 41.9
FAN18G2672 Fragaria x ananassa HOM05D003157 ORTHO05D004447 3.7e-11 72.8 61 59.0
SalBow6G1229 Salvia bowleyana HOM05D003157 ORTHO05D004447 3.7e-11 72.8 98 42.9
BolC7t45866H Brassica oleracea HOM05D003157 ORTHO05D004447 4.8e-11 72.4 82 46.3
BolC8t48585H Brassica oleracea HOM05D003157 ORTHO05D004447 6.3e-11 72.0 291 26.1
MSTRG.11494 Avicennia marina HOM05D003157 ORTHO05D004447 8.2e-11 71.6 99 45.5
CiPaw.11G020300 Carya illinoinensis HOM05D003157 ORTHO05D012168 8.2e-11 71.6 75 49.3
SGA_v2.0_scaffold7G04161 Striga asiatica HOM05D003157 ORTHO05D004447 8.2e-11 71.6 99 43.4
AL7G28510 Arabidopsis lyrata HOM05D003157 ORTHO05D004447 1.1e-10 71.2 96 42.7
MSTRG.9691 Avicennia marina HOM05D003157 ORTHO05D004447 1.1e-10 71.2 99 43.4
C01p20020 Brassica napus HOM05D003157 ORTHO05D004447 1.1e-10 71.2 93 43.0
Peaxi162Scf00089g01334 Petunia axillaris HOM05D003157 ORTHO05D004447 1.1e-10 71.2 212 31.1
THA.LOC104809775 Tarenaya hassleriana HOM05D003157 ORTHO05D004447 1.1e-10 71.2 77 45.5
Aqoxy3G03011 Aquilegia oxysepala HOM05D003157 ORTHO05D012168 1.4e-10 70.9 90 41.1
BcaC06g32868 Brassica carinata HOM05D003157 ORTHO05D004447 1.4e-10 70.9 82 46.3
SEGI_11452 Sequoiadendron giganteum HOM05D003157 ORTHO05D004447 1.4e-10 70.9 96 36.5
Carub.0007s1637 Capsella rubella HOM05D003157 ORTHO05D004447 1.8e-10 70.5 295 27.8
Lsat_1_v5_gn_1_27780 Lactuca sativa HOM05D003157 ORTHO05D004447 2.4e-10 70.1 69 53.6
Aa31LG4G9790 Aethionema arabicum HOM05D003157 ORTHO05D004447 3.1e-10 69.7 93 41.9
DCAR_016024 Daucus carota HOM05D003157 ORTHO05D004447 3.1e-10 69.7 65 47.7
ECA232G3241 Erigeron canadensis HOM05D003157 ORTHO05D004447 3.1e-10 69.7 100 40.0
Migut.D01995 Erythranthe guttata HOM05D003157 ORTHO05D004447 3.1e-10 69.7 93 45.2
PSO754G0123 Papaver somniferum HOM05D003157 ORTHO05D004447 3.1e-10 69.7 160 31.2
Psat4g060960 Pisum sativum HOM05D003157 ORTHO05D012168 3.1e-10 69.7 92 43.5
Lsat_1_v5_gn_4_77240 Lactuca sativa HOM05D003157 ORTHO05D004447 5.3e-10 68.9 97 42.3
Medtr4g104940 Medicago truncatula HOM05D003157 ORTHO05D012168 6.9e-10 68.6 99 39.4
Sc12g0005010 Simmondsia chinensis HOM05D003157 ORTHO05D004447 6.9e-10 68.6 101 45.5
A03p55470 Brassica napus HOM05D003157 ORTHO05D004447 1.5e-09 67.4 95 42.1
BraA03t14620Z Brassica rapa HOM05D003157 ORTHO05D004447 1.5e-09 67.4 95 42.1
Medtr4g104890 Medicago truncatula HOM05D003157 ORTHO05D012168 1.5e-09 67.4 94 41.5
PSO111G0086 Papaver somniferum HOM05D003157 ORTHO05D004447 2.0e-09 67.0 160 30.6
unitig_37.g12746 Utricularia gibba HOM05D003157 ORTHO05D004447 2.0e-09 67.0 98 40.8
EL10Ac5g10658 Beta vulgaris HOM05D003157 ORTHO05D004447 2.6e-09 66.6 189 31.7
SGA_v2.0_scaffold114G31812 Striga asiatica HOM05D003157 ORTHO05D004447 4.5e-09 65.9 98 39.8
Ca_03503_v3 Cicer arietinum L. HOM05D003157 ORTHO05D004447 1.3e-08 64.3 60 56.7
TPR.G37497 Trifolium pratense HOM05D003157 ORTHO05D012168 1.3e-08 64.3 84 40.5
Ah.11g051160 Amaranthus hybridus HOM05D003157 ORTHO05D004447 1.7e-08 63.9 102 42.2
Medtr4g104980 Medicago truncatula HOM05D003157 ORTHO05D012168 1.7e-08 63.9 82 40.2
Sed0026079 Sechium edule HOM05D003157 ORTHO05D004447 1.7e-08 63.9 85 40.0
TPR.G37470 Trifolium pratense HOM05D003157 ORTHO05D004447 1.7e-08 63.9 82 36.6
DCAR_021588 Daucus carota HOM05D003157 ORTHO05D004447 2.2e-08 63.5 63 47.6
Medtr4g104950 Medicago truncatula HOM05D003157 ORTHO05D012168 2.2e-08 63.5 80 45.0
Medtr4g104960 Medicago truncatula HOM05D003157 ORTHO05D012168 2.9e-08 63.2 81 42.0
HanXRQChr16g0504701 Helianthus annuus HOM05D003157 ORTHO05D004447 5.0e-08 62.4 105 38.1
MBI18_g17021_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 5.0e-08 62.4 142 34.5
SEGI_31497 Sequoiadendron giganteum HOM05D003157 ORTHO05D012168 5.0e-08 62.4 85 37.6
Lj9A442T64 Lonicera japonica HOM05D003157 ORTHO05D004447 6.5e-08 62.0 70 47.1
HanXRQChr10g0296081 Helianthus annuus HOM05D003157 ORTHO05D004447 1.4e-07 60.8 98 38.8
Lsat_1_v5_gn_8_1421 Lactuca sativa HOM05D003157 ORTHO05D012168 1.9e-07 60.5 72 45.8
Medtr4g104990 Medicago truncatula HOM05D003157 ORTHO05D012168 1.9e-07 60.5 83 42.2
Nn3g16701 Nelumbo nucifera HOM05D003157 ORTHO05D004447 1.9e-07 60.5 91 38.5
Rhsim10G0015600 Rhododendron simsii HOM05D001812 ORTHO05D001874 2.5e-07 60.1 90 36.7
Migut.O00156 Erythranthe guttata HOM05D003157 ORTHO05D004447 5.5e-07 58.9 92 39.1
Migut.O00157 Erythranthe guttata HOM05D003157 ORTHO05D004447 7.2e-07 58.5 107 37.4
ECA232G3078 Erigeron canadensis HOM05D000048 ORTHO05D002613 1.6e-06 57.4 92 41.3
Rhsim10G0016700 Rhododendron simsii HOM05D001812 ORTHO05D001874 2.7e-06 56.6 89 37.1
Lsat_1_v5_gn_8_131800 Lactuca sativa HOM05D003157 ORTHO05D004447 4.7e-06 55.8 85 42.4
MBI19_g29861_MAGBIO Magnolia biondii HOM05D003157 ORTHO05D004447 6.1e-06 55.5 127 33.9


User provided reference genes

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