Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g36510 Fragaria vesca HOM05D006943 ORTHO05D008565 4.1e-157 558.9 519 100.0
FAN27G2029 Fragaria x ananassa HOM05D006943 ORTHO05D008565 5.9e-148 528.5 519 96.7
FAN15G2754 Fragaria x ananassa HOM05D006943 ORTHO05D008565 3.1e-133 479.6 530 78.3
FAN20G3130 Fragaria x ananassa HOM05D006943 ORTHO05D008565 5.7e-127 458.8 530 79.6
RcHm_v2.0_Chr6g0305361 Rosa chinensis HOM05D006943 ORTHO05D008565 2.4e-109 400.2 561 69.7
Prupe.1G456500 Prunus persica HOM05D006943 ORTHO05D008565 2.5e-45 187.6 186 57.0
Dinv37491 Davidia involucrata HOM05D006943 ORTHO05D008565 2.7e-44 184.1 164 57.3
QL12p025818 Quercus lobata HOM05D006943 ORTHO05D008565 4.3e-42 176.8 183 52.5
Dinv38807 Davidia involucrata HOM05D006943 ORTHO05D008565 6.3e-41 172.9 164 54.3
Sed0013911 Sechium edule HOM05D006943 ORTHO05D008565 5.3e-40 169.9 172 51.7
Cpa.g.sc148.5 Carica papaya HOM05D006943 ORTHO05D008565 1.2e-39 168.7 141 57.4
MD15G1104200 Malus domestica HOM05D006943 ORTHO05D008565 2.6e-39 167.5 519 34.7
ClCG05G026350 Citrullus lanatus HOM05D006943 ORTHO05D008565 2.9e-38 164.1 173 50.3
MD08G1124900 Malus domestica HOM05D006943 ORTHO05D008565 3.8e-38 163.7 188 50.5
Haze_21789 Corylus avellana HOM05D006943 ORTHO05D008565 6.5e-38 162.9 169 50.3
MELO3C003604.2 Cucumis melo HOM05D006943 ORTHO05D008565 5.5e-37 159.8 176 50.0
Nn5g27072 Nelumbo nucifera HOM05D006943 ORTHO05D008565 5.5e-37 159.8 166 51.2
TAR636G0756 Trochodendron aralioides HOM05D006943 ORTHO05D008565 5.5e-37 159.8 161 54.7
CsaV3_3G047250 Cucumis sativus L. HOM05D006943 ORTHO05D008565 7.2e-37 159.5 166 53.0
GSVIVG01035569001 Vitis vinifera HOM05D006943 ORTHO05D008565 9.3e-37 159.1 180 47.2
CANSAT35G2034 Cannabis sativa HOM05D006943 ORTHO05D008565 1.2e-36 158.7 172 52.3
TWI63G1698 Tripterygium wilfordii HOM05D006943 ORTHO05D008565 2.1e-36 157.9 153 53.6
THA.LOC104803585 Tarenaya hassleriana HOM05D006943 ORTHO05D008565 1.3e-35 155.2 177 48.0
Eucgr.C02135 Eucalyptus grandis HOM05D006943 ORTHO05D008565 2.3e-35 154.5 158 50.6
Eucgr.L02411 Eucalyptus grandis HOM05D006943 ORTHO05D008565 3.0e-35 154.1 141 53.2
BcaB03g12686 Brassica carinata HOM05D006943 ORTHO05D008565 1.5e-34 151.8 141 53.9
Thhalv10025787m.g Eutrema salsugineum HOM05D006943 ORTHO05D008565 1.5e-34 151.8 161 50.3
CSS0017346 Camellia sinensis var. sinensis HOM05D006943 ORTHO05D008565 1.9e-34 151.4 152 52.6
CSS0048200 Camellia sinensis var. sinensis HOM05D006943 ORTHO05D008565 1.9e-34 151.4 152 52.6
Cfa013306 Carpinus fangiana HOM05D006943 ORTHO05D008565 1.9e-34 151.4 169 47.3
CARHR239150 Cardamine hirsuta HOM05D006943 ORTHO05D008565 2.5e-34 151.0 165 49.7
Manes.16G137900 Manihot esculenta HOM05D006943 ORTHO05D008565 2.5e-34 151.0 135 54.1
CSS0049214 Camellia sinensis var. sinensis HOM05D006943 ORTHO05D008565 3.3e-34 150.6 141 53.9
Duzib168G0749 Durio zibethinus HOM05D006943 ORTHO05D008565 5.7e-34 149.8 180 46.1
AL7G20800 Arabidopsis lyrata HOM05D006943 ORTHO05D008565 7.4e-34 149.4 168 49.4
AT4G31270 Arabidopsis thaliana HOM05D006943 ORTHO05D008565 2.8e-33 147.5 163 49.1
Carub.0007s0929 Capsella rubella HOM05D006943 ORTHO05D008565 2.8e-33 147.5 173 48.0
Aa31LG2G19090 Aethionema arabicum HOM05D006943 ORTHO05D008565 4.8e-33 146.7 173 47.4
Sc06g0001270 Simmondsia chinensis HOM05D006943 ORTHO05D008565 4.8e-33 146.7 157 49.7
Actinidia25739 Actinidia chinensis HOM05D006943 ORTHO05D008565 2.4e-32 144.4 192 42.2
Sp7g29130 Schrenkiella parvula HOM05D006943 ORTHO05D008565 4.1e-32 143.7 163 49.1
A08p18750 Brassica napus HOM05D006943 ORTHO05D008565 9.1e-32 142.5 161 48.4
BraA08t33836Z Brassica rapa HOM05D006943 ORTHO05D008565 1.5e-31 141.7 163 47.2
Lalb_Chr22g0361191 Lupinus albus HOM05D006943 ORTHO05D008565 2.0e-31 141.4 181 44.8
BcaC01g01105 Brassica carinata HOM05D006943 ORTHO05D008565 2.6e-31 141.0 161 47.8
C03p88130 Brassica napus HOM05D006943 ORTHO05D008565 2.6e-31 141.0 161 47.8
Potri.006G279100 Populus trichocarpa HOM05D006943 ORTHO05D008565 2.6e-31 141.0 129 48.8
Hund03260 Selenicereus undatus HOM05D006943 ORTHO05D008565 2.6e-31 141.0 148 49.3
BolC3t21121H Brassica oleracea HOM05D006943 ORTHO05D008565 4.5e-31 140.2 163 46.6
EL10Ac2g03684 Beta vulgaris HOM05D006943 ORTHO05D008565 1.0e-30 139.0 164 48.2
arahy.Tifrunner.gnm1.ann1.HML22G Arachis hypogaea HOM05D006943 ORTHO05D008565 1.7e-30 138.3 184 42.9
Potri.018G002801 Populus trichocarpa HOM05D006943 ORTHO05D008565 5.0e-30 136.7 157 47.1
arahy.Tifrunner.gnm1.ann1.X8DLDE Arachis hypogaea HOM05D006943 ORTHO05D008565 2.5e-29 134.4 184 42.4
AUR62038724 Chenopodium quinoa HOM05D006943 ORTHO05D008565 1.2e-28 132.1 175 42.3
AUR62043827 Chenopodium quinoa HOM05D006943 ORTHO05D008565 1.2e-28 132.1 175 42.3
AUR62020649 Chenopodium quinoa HOM05D006943 ORTHO05D008565 1.6e-28 131.7 175 41.7
Atru.chr7.2692 Acer truncatum HOM05D006943 ORTHO05D008565 6.1e-28 129.8 167 46.7
Ciclev10009072m.g Citrus clementina HOM05D006943 ORTHO05D008565 3.0e-27 127.5 170 46.5
Ah.11g044140 Amaranthus hybridus HOM05D006943 ORTHO05D008565 2.0e-26 124.8 175 42.3
Aqoxy7G02511 Aquilegia oxysepala HOM05D006943 ORTHO05D008565 7.4e-26 122.9 165 40.0
Glyma.17G194700 Glycine max HOM05D006943 ORTHO05D008565 7.4e-26 122.9 161 46.0
Nitab4.5_0001942g0070 Nicotiana tabacum HOM05D006943 ORTHO05D008565 1.7e-25 121.7 180 39.4
Solyc08g069160.3 Solanum lycopersicum HOM05D006943 ORTHO05D008565 2.2e-25 121.3 176 38.1
Sopen08g022790 Solanum pennellii HOM05D006943 ORTHO05D008565 2.2e-25 121.3 176 38.1
PGSC0003DMG400029553 Solanum tuberosum HOM05D006943 ORTHO05D008565 2.2e-25 121.3 176 38.1
MBI16_g00837_MAGBIO Magnolia biondii HOM05D006943 ORTHO05D008565 2.8e-25 120.9 178 42.1
Cc10_g14290 Coffea canephora HOM05D006943 ORTHO05D008565 2.4e-24 117.9 156 40.4
Lsat_1_v5_gn_3_68681 Lactuca sativa HOM05D006943 ORTHO05D008565 5.3e-24 116.7 175 42.9
Lj5g0018295 Lotus japonicus HOM05D006943 ORTHO05D008565 2.6e-23 114.4 173 41.0
Nitab4.5_0005058g0010 Nicotiana tabacum HOM05D006943 ORTHO05D008565 3.4e-23 114.0 173 38.2
CAN.G480.10 Capsicum annuum HOM05D006943 ORTHO05D008565 4.5e-23 113.6 170 37.1
TPR.G11968 Trifolium pratense HOM05D006943 ORTHO05D008565 5.9e-23 113.2 164 43.9
Lsat_1_v5_gn_5_56401 Lactuca sativa HOM05D006943 ORTHO05D008565 7.7e-23 112.8 127 48.8
HPP92_021992 Vanilla planifolia HOM05D006943 ORTHO05D008565 7.7e-23 112.8 147 44.2
PSO170G5679 Papaver somniferum HOM05D006943 ORTHO05D008565 1.0e-22 112.5 174 39.7
Phvul.001G077900 Phaseolus vulgaris HOM05D006943 ORTHO05D008565 1.7e-22 111.7 156 44.9
Peaxi162Scf00213g00939 Petunia axillaris HOM05D006943 ORTHO05D008565 2.9e-22 110.9 177 35.6
PSO063G4511 Papaver somniferum HOM05D006943 ORTHO05D008565 3.8e-22 110.5 174 39.1
COL.COLO4_18631 Corchorus olitorius HOM05D006943 ORTHO05D008565 5.0e-22 110.2 185 38.4
Glyma.14G138000 Glycine max HOM05D006943 ORTHO05D008565 6.5e-22 109.8 172 43.6
HanXRQChr03g0081291 Helianthus annuus HOM05D006943 ORTHO05D008565 6.5e-22 109.8 161 44.7
HanXRQChr17g0539241 Helianthus annuus HOM05D006943 ORTHO05D008565 6.5e-22 109.8 137 46.0
VMungo0647G1044 Vigna mungo HOM05D006943 ORTHO05D008565 8.5e-22 109.4 153 45.8
ECA240G4190 Erigeron canadensis HOM05D006943 ORTHO05D008565 1.4e-21 108.6 86 59.3
ECA246G0365 Erigeron canadensis HOM05D006943 ORTHO05D008565 1.4e-21 108.6 148 43.2
Ca_01518_v3 Cicer arietinum L. HOM05D006943 ORTHO05D008565 1.9e-21 108.2 170 42.4
CSS0045137 Camellia sinensis var. sinensis HOM05D006943 ORTHO05D008565 9.4e-21 105.9 172 43.0
Psat6g033160 Pisum sativum HOM05D006943 ORTHO05D008565 7.9e-20 102.8 143 41.3
Medtr1g009220 Medicago truncatula HOM05D006943 ORTHO05D008565 3.9e-19 100.5 170 40.6
ATR0626G281 Amborella trichopoda HOM05D006943 ORTHO05D008565 5.2e-19 100.1 141 40.4
CDE02G0425 Ceratophyllum demersum HOM05D006943 ORTHO05D008565 5.2e-19 100.1 161 34.8
Os02g0174300 Oryza sativa ssp. japonica HOM05D006943 ORTHO05D008565 1.1e-18 99.0 125 40.0
DCAR_004562 Daucus carota HOM05D006943 ORTHO05D008565 7.4e-18 96.3 164 38.4
Zm00001eb233350 Zea mays HOM05D006943 ORTHO05D008565 7.4e-18 96.3 131 38.2
Oeu008780.1 Olea europaea HOM05D006943 ORTHO05D008565 2.2e-17 94.7 157 38.9
MSTRG.13940 Avicennia marina HOM05D006943 ORTHO05D008565 8.2e-17 92.8 78 55.1
MSTRG.13929 Avicennia marina HOM05D006943 ORTHO05D008565 5.3e-16 90.1 76 55.3
Atru.chr6.219 Acer truncatum HOM05D006943 ORTHO05D008565 1.6e-15 88.6 60 65.0
Migut.E01408 Erythranthe guttata HOM05D006943 ORTHO05D008565 2.0e-15 88.2 78 53.8
Migut.E01420 Erythranthe guttata HOM05D006943 ORTHO05D008565 2.0e-15 88.2 78 53.8
Actinidia03335 Actinidia chinensis HOM05D006943 ORTHO05D008565 6.5e-14 83.2 58 65.5
SalBow8G0710 Salvia bowleyana HOM05D006943 ORTHO05D008565 7.2e-13 79.7 174 33.3
CSS0031863 Camellia sinensis var. sinensis HOM05D006943 ORTHO05D008565 1.6e-12 78.6 172 36.6
Mapoly0001s0020 Marchantia polymorpha HOM05D002537 ORTHO05D002751 4.7e-12 77.0 158 29.7
Mapoly0056s0059 Marchantia polymorpha HOM05D002537 ORTHO05D002751 4.4e-10 70.5 111 33.3
Pp3c4_22830 Physcomitrium patens HOM05D002537 ORTHO05D002751 5.7e-10 70.1 146 34.9
Pp3c4_22880 Physcomitrium patens HOM05D002537 ORTHO05D002751 5.7e-10 70.1 146 34.9
Atru.chr6.1911 Acer truncatum HOM05D002537 ORTHO05D002751 9.7e-10 69.3 127 33.9
Phvul.002G281800 Phaseolus vulgaris HOM05D002537 ORTHO05D002751 9.7e-10 69.3 125 32.8
Prupe.5G142400 Prunus persica HOM05D002537 ORTHO05D002751 1.7e-09 68.6 127 31.5
VMungo0251G0975 Vigna mungo HOM05D002537 ORTHO05D002751 1.7e-09 68.6 126 31.7
FAN13G0340 Fragaria x ananassa HOM05D002537 ORTHO05D002751 2.2e-09 68.2 131 32.1
Pp3c26_2600 Physcomitrium patens HOM05D002537 ORTHO05D002751 2.2e-09 68.2 136 33.1
Pp3c26_2630 Physcomitrium patens HOM05D002537 ORTHO05D002751 2.2e-09 68.2 136 33.1
FvH4_5g09440 Fragaria vesca HOM05D002537 ORTHO05D002751 2.8e-09 67.8 129 31.0
FAN18G1947 Fragaria x ananassa HOM05D002537 ORTHO05D002751 2.8e-09 67.8 129 31.0
FAN04G1977 Fragaria x ananassa HOM05D002537 ORTHO05D002751 6.3e-09 66.6 129 31.0
Zm00001eb421380 Zea mays HOM05D002537 ORTHO05D002751 6.3e-09 66.6 134 30.6
FAN08G1434 Fragaria x ananassa HOM05D002537 ORTHO05D002751 1.1e-08 65.9 130 30.8
Glyma.08G007800 Glycine max HOM05D002537 ORTHO05D002751 1.1e-08 65.9 123 30.9
Peaxi162Scf00314g00642 Petunia axillaris HOM05D002537 ORTHO05D002751 1.1e-08 65.9 121 33.1
QL10p000562 Quercus lobata HOM05D002537 ORTHO05D002751 1.1e-08 65.9 152 31.6
Lsat_1_v5_gn_5_10240 Lactuca sativa HOM05D002537 ORTHO05D002751 1.8e-08 65.1 122 33.6
Lalb_Chr12g0202491 Lupinus albus HOM05D002537 ORTHO05D002751 1.8e-08 65.1 124 30.6
MD06G1131400 Malus domestica HOM05D002537 ORTHO05D002751 1.8e-08 65.1 129 29.5
Thecc.09G002300 Theobroma cacao HOM05D006943 ORTHO05D008565 1.8e-08 65.1 61 54.1
Ah.02g114620 Amaranthus hybridus HOM05D002537 ORTHO05D002751 2.4e-08 64.7 125 34.4
Ciclev10033491m.g Citrus clementina HOM05D002537 ORTHO05D002751 2.4e-08 64.7 161 29.2
Hund02506 Selenicereus undatus HOM05D002537 ORTHO05D002751 3.1e-08 64.3 169 28.4
Thecc.03G139900 Theobroma cacao HOM05D002537 ORTHO05D002751 3.1e-08 64.3 132 29.5
VMungo0720G0266 Vigna mungo HOM05D006943 ORTHO05D008565 4.1e-08 63.9 135 34.1
Zm00001eb084860 Zea mays HOM05D002537 ORTHO05D002751 4.1e-08 63.9 141 28.4
CAN.G843.13 Capsicum annuum HOM05D002537 ORTHO05D002751 7.0e-08 63.2 113 31.0
DCAR_021402 Daucus carota HOM05D002537 ORTHO05D002751 7.0e-08 63.2 165 33.3
Lalb_Chr07g0183801 Lupinus albus HOM05D002537 ORTHO05D002751 7.0e-08 63.2 124 28.2
SMO351G0173 Selaginella moellendorffii HOM05D002537 ORTHO05D002751 7.0e-08 63.2 116 25.0
AagrBONN_evm.TU.Sc2ySwM_228.3565 Anthoceros agrestis HOM05D002537 ORTHO05D002751 9.1e-08 62.8 81 37.0
AUR62009533 Chenopodium quinoa HOM05D002537 ORTHO05D002751 9.1e-08 62.8 92 38.0
ECA246G2368 Erigeron canadensis HOM05D002537 ORTHO05D002751 9.1e-08 62.8 122 32.8
Glyma.05G200400 Glycine max HOM05D002537 ORTHO05D002751 9.1e-08 62.8 126 30.2
Hma1.2p1_0577F.1_g182310 Hydrangea macrophylla HOM05D002537 ORTHO05D002751 9.1e-08 62.8 123 30.9
Dinv23220 Davidia involucrata HOM05D002537 ORTHO05D002751 1.2e-07 62.4 125 29.6
Nitab4.5_0010249g0020 Nicotiana tabacum HOM05D002537 ORTHO05D002751 1.2e-07 62.4 119 31.1
RcHm_v2.0_Chr7g0188751 Rosa chinensis HOM05D002537 ORTHO05D002751 1.2e-07 62.4 142 28.2
Cc00_g33880 Coffea canephora HOM05D002537 ORTHO05D002751 1.6e-07 62.0 188 30.3
HanXRQChr05g0155411 Helianthus annuus HOM05D002537 ORTHO05D002751 1.6e-07 62.0 156 30.8
Medtr8g100130 Medicago truncatula HOM05D002537 ORTHO05D002751 1.6e-07 62.0 124 29.0
Nitab4.5_0000976g0050 Nicotiana tabacum HOM05D002537 ORTHO05D002751 2.0e-07 61.6 119 31.1
Cc00_g33380 Coffea canephora HOM05D002537 ORTHO05D002751 3.5e-07 60.8 188 29.8
GSVIVG01008644001 Vitis vinifera HOM05D002537 ORTHO05D002751 3.5e-07 60.8 115 30.4
Lj9C486T16 Lonicera japonica HOM05D002537 ORTHO05D002751 5.9e-07 60.1 113 31.9
Pp3c12_22800 Physcomitrium patens HOM05D002537 ORTHO05D002751 5.9e-07 60.1 128 29.7
TPR.G40627 Trifolium pratense HOM05D002537 ORTHO05D002751 5.9e-07 60.1 122 28.7
MD14G1147800 Malus domestica HOM05D002537 ORTHO05D002751 1.0e-06 59.3 162 27.8
Pp3c15_4190 Physcomitrium patens HOM05D002537 ORTHO05D002751 1.0e-06 59.3 152 23.0
SMO367G0451 Selaginella moellendorffii HOM05D003725 ORTHO05D004294 1.0e-06 59.3 122 29.5
Cpa.g.sc2.95 Carica papaya HOM05D003725 ORTHO05D004294 1.3e-06 58.9 115 32.2
Duzib084G0396 Durio zibethinus HOM05D002537 ORTHO05D002751 1.3e-06 58.9 169 29.0
Manes.15G141750 Manihot esculenta HOM05D003725 ORTHO05D004294 1.3e-06 58.9 76 40.8
Mapoly0003s0164 Marchantia polymorpha HOM05D003725 ORTHO05D004294 1.3e-06 58.9 81 35.8
Potri.015G105800 Populus trichocarpa HOM05D002537 ORTHO05D002751 1.3e-06 58.9 115 29.6
Solyc03g118230.3 Solanum lycopersicum HOM05D002537 ORTHO05D002751 1.3e-06 58.9 156 27.6
Sopen03g037140 Solanum pennellii HOM05D002537 ORTHO05D002751 1.3e-06 58.9 156 27.6
PGSC0003DMG400014176 Solanum tuberosum HOM05D002537 ORTHO05D002751 1.3e-06 58.9 156 27.6
Thecc.02G298200 Theobroma cacao HOM05D003725 ORTHO05D004294 1.3e-06 58.9 141 30.5
Lj4g0017089 Lotus japonicus HOM05D002537 ORTHO05D002751 2.9e-06 57.8 129 26.4
EL10Ac5g11294 Beta vulgaris HOM05D002537 ORTHO05D002751 3.8e-06 57.4 119 34.5
Psat7g039360 Pisum sativum HOM05D002537 ORTHO05D002751 3.8e-06 57.4 155 29.7
HanXRQChr16g0529331 Helianthus annuus HOM05D002537 ORTHO05D002751 5.0e-06 57.0 153 28.8
SEGI_36760 Sequoiadendron giganteum HOM05D002537 ORTHO05D002751 5.0e-06 57.0 109 31.2
Manes.17G092600 Manihot esculenta HOM05D003725 ORTHO05D004294 6.5e-06 56.6 76 36.8
SEGI_31691 Sequoiadendron giganteum HOM05D002537 ORTHO05D004294 6.5e-06 56.6 109 30.3
AagrBONN_evm.TU.Sc2ySwM_344.4466 Anthoceros agrestis HOM05D002537 ORTHO05D002751 8.5e-06 56.2 130 27.7
CBR_g8001 Chara braunii HOM05D000601 ORTHO05D000407 8.5e-06 56.2 124 31.5
Lalb_Chr13g0296971 Lupinus albus HOM05D002537 ORTHO05D002751 8.5e-06 56.2 123 28.5
Pp3c4_270 Physcomitrium patens HOM05D002537 ORTHO05D002751 8.5e-06 56.2 147 28.6
Zm00001eb217780 Zea mays HOM05D003725 ORTHO05D004294 8.5e-06 56.2 109 25.7


User provided reference genes

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