Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g34180 Fragaria vesca HOM05D005621 ORTHO05D007248 3.7e-58 228.0 116 100.0
FAN24G2187 Fragaria x ananassa HOM05D005621 ORTHO05D007248 1.1e-57 226.5 116 99.1
FAN11G2270 Fragaria x ananassa HOM05D005621 ORTHO05D007248 8.2e-50 200.3 110 93.6
FAN21G0060 Fragaria x ananassa HOM05D005621 ORTHO05D007248 9.4e-46 186.8 101 95.0
FAN16G3294 Fragaria x ananassa HOM05D005621 ORTHO05D007248 4.6e-45 184.5 102 95.1
FAN25G0915 Fragaria x ananassa HOM05D005621 ORTHO05D007248 1.8e-44 182.6 101 93.1
FvH4_3g08970 Fragaria vesca HOM05D005621 ORTHO05D007248 3.0e-44 181.8 99 96.0
RcHm_v2.0_Chr5g0008741 Rosa chinensis HOM05D005621 ORTHO05D007248 3.9e-44 181.4 99 94.9
MD10G1292500 Malus domestica HOM05D005621 ORTHO05D007248 2.0e-43 179.1 99 93.9
MD00G1115700 Malus domestica HOM05D005621 ORTHO05D007248 2.5e-43 178.7 99 92.9
Prupe.4G049400 Prunus persica HOM05D005621 ORTHO05D007248 1.4e-41 172.9 99 90.9
Gohir.A06G211100 Gossypium hirsutum HOM05D005621 ORTHO05D007248 3.1e-41 171.8 99 88.9
Gorai.010G256400 Gossypium raimondii HOM05D005621 ORTHO05D007248 3.1e-41 171.8 99 88.9
Gohir.D06G210100 Gossypium hirsutum HOM05D005621 ORTHO05D007248 1.2e-40 169.9 99 87.9
Thecc.06G184600 Theobroma cacao HOM05D005621 ORTHO05D007248 1.5e-40 169.5 99 87.9
COL.COLO4_31445 Corchorus olitorius HOM05D005621 ORTHO05D007248 5.9e-40 167.5 99 85.9
Gohir.A05G160800 Gossypium hirsutum HOM05D005621 ORTHO05D007248 1.0e-39 166.8 99 85.9
Gohir.D05G163500 Gossypium hirsutum HOM05D005621 ORTHO05D007248 1.0e-39 166.8 99 85.9
Gorai.009G168600 Gossypium raimondii HOM05D005621 ORTHO05D007248 1.0e-39 166.8 99 85.9
Eucgr.D00609 Eucalyptus grandis HOM05D005621 ORTHO05D007248 1.7e-39 166.0 99 84.8
Peaxi162Scf02261g00011 Petunia axillaris HOM05D005621 ORTHO05D007248 3.8e-39 164.9 99 85.9
CANSAT35G1861 Cannabis sativa HOM05D005621 ORTHO05D007248 6.5e-39 164.1 97 88.7
HanXRQChr09g0253381 Helianthus annuus HOM05D005621 ORTHO05D007248 6.5e-39 164.1 96 85.4
Oeu029361.1 Olea europaea HOM05D005621 ORTHO05D007248 6.5e-39 164.1 102 84.3
ECA236G3692 Erigeron canadensis HOM05D005621 ORTHO05D007248 8.5e-39 163.7 96 85.4
CAN.G529.17 Capsicum annuum HOM05D005621 ORTHO05D007248 1.4e-38 162.9 99 84.8
Duzib235G0013 Durio zibethinus HOM05D005621 ORTHO05D007248 1.4e-38 162.9 99 83.8
ClCG01G023060 Citrullus lanatus HOM05D005621 ORTHO05D007248 2.5e-38 162.2 100 85.0
Atru.chr10.1848 Acer truncatum HOM05D005621 ORTHO05D007248 3.2e-38 161.8 96 87.5
MSTRG.14706 Avicennia marina HOM05D005621 ORTHO05D007248 3.2e-38 161.8 100 85.0
MELO3C007277.2 Cucumis melo HOM05D005621 ORTHO05D007248 3.2e-38 161.8 100 86.0
Nitab4.5_0005745g0010 Nicotiana tabacum HOM05D005621 ORTHO05D007248 3.2e-38 161.8 99 84.8
Nitab4.5_0013984g0010 Nicotiana tabacum HOM05D005621 ORTHO05D007248 3.2e-38 161.8 99 84.8
DCAR_004062 Daucus carota HOM05D005621 ORTHO05D007248 4.2e-38 161.4 96 82.3
Lsat_1_v5_gn_7_21701 Lactuca sativa HOM05D005621 ORTHO05D007248 4.2e-38 161.4 96 83.3
Manes.16G029300 Manihot esculenta HOM05D005621 ORTHO05D007248 4.2e-38 161.4 100 87.0
Cpa.g.sc464.3 Carica papaya HOM05D005621 ORTHO05D007248 5.5e-38 161.0 99 83.8
Solyc02g077990.3 Solanum lycopersicum HOM05D005621 ORTHO05D007248 5.5e-38 161.0 99 82.8
Sopen02g022830 Solanum pennellii HOM05D005621 ORTHO05D007248 5.5e-38 161.0 99 82.8
Dinv17326 Davidia involucrata HOM05D005621 ORTHO05D007248 7.2e-38 160.6 100 86.0
Migut.H01481 Erythranthe guttata HOM05D005621 ORTHO05D007248 7.2e-38 160.6 102 81.4
SalBow7G0434 Salvia bowleyana HOM05D005621 ORTHO05D007248 9.4e-38 160.2 102 81.4
SalBow7G3926 Salvia bowleyana HOM05D005621 ORTHO05D007248 9.4e-38 160.2 102 81.4
CsaV3_6G050190 Cucumis sativus L. HOM05D005621 ORTHO05D007248 1.2e-37 159.8 100 85.0
PGSC0003DMG400029704 Solanum tuberosum HOM05D005621 ORTHO05D007248 1.2e-37 159.8 96 84.4
GSVIVG01021083001 Vitis vinifera HOM05D005621 ORTHO05D007248 2.7e-37 158.7 97 85.6
Nitab4.5_0012909g0010 Nicotiana tabacum HOM05D005621 ORTHO05D007248 3.6e-37 158.3 99 82.8
PGR004G2009 Punica granatum HOM05D005621 ORTHO05D007248 3.6e-37 158.3 97 87.6
CiPaw.09G061400 Carya illinoinensis HOM05D005621 ORTHO05D007248 4.7e-37 157.9 100 82.0
Dinv40577 Davidia involucrata HOM05D005621 ORTHO05D007248 6.1e-37 157.5 100 84.0
QL05p041319 Quercus lobata HOM05D005621 ORTHO05D007248 6.1e-37 157.5 100 80.0
ATR0217G013 Amborella trichopoda HOM05D005621 ORTHO05D007248 7.9e-37 157.1 96 85.4
Nn1g06478 Nelumbo nucifera HOM05D005621 ORTHO05D007248 1.0e-36 156.8 97 84.5
PSO541G5241 Papaver somniferum HOM05D005621 ORTHO05D007248 1.4e-36 156.4 97 84.5
PSO675G9131 Papaver somniferum HOM05D005621 ORTHO05D007248 1.4e-36 156.4 97 84.5
unitig_0.g964 Utricularia gibba HOM05D005621 ORTHO05D007248 1.4e-36 156.4 101 77.2
Ciclev10016057m.g Citrus clementina HOM05D005621 ORTHO05D007248 1.8e-36 156.0 96 83.3
Hma1.2p1_0208F.1_g088250 Hydrangea macrophylla HOM05D005621 ORTHO05D007248 1.8e-36 156.0 100 81.0
Nitab4.5_0007329g0010 Nicotiana tabacum HOM05D005621 ORTHO05D007248 1.8e-36 156.0 98 82.7
Potri.004G045700 Populus trichocarpa HOM05D005621 ORTHO05D007248 1.8e-36 156.0 100 81.0
Sabra04G0028500 Salix brachista HOM05D005621 ORTHO05D007248 1.8e-36 156.0 100 81.0
Haze_06422 Corylus avellana HOM05D005621 ORTHO05D007248 8.8e-36 153.7 100 80.0
TAR624G0986 Trochodendron aralioides HOM05D005621 ORTHO05D007248 8.8e-36 153.7 97 83.5
Ca_18557_v3 Cicer arietinum L. HOM05D005621 ORTHO05D007248 1.5e-35 152.9 97 81.4
Cfa000493 Carpinus fangiana HOM05D005621 ORTHO05D007248 2.0e-35 152.5 97 81.4
Sed0019345 Sechium edule HOM05D005621 ORTHO05D007248 2.0e-35 152.5 100 78.0
Ah.14g089540 Amaranthus hybridus HOM05D005621 ORTHO05D007248 2.6e-35 152.1 102 79.4
Lj4g0015429 Lotus japonicus HOM05D005621 ORTHO05D007248 3.3e-35 151.8 97 80.4
MBI18_g13183_MAGBIO Magnolia biondii HOM05D005621 ORTHO05D007248 3.3e-35 151.8 97 82.5
Glyma.07G198500 Glycine max HOM05D005621 ORTHO05D007248 7.4e-35 150.6 97 83.5
Ah.09g237450 Amaranthus hybridus HOM05D005621 ORTHO05D007248 9.7e-35 150.2 102 79.4
Glyma.13G177900 Glycine max HOM05D005621 ORTHO05D007248 9.7e-35 150.2 97 83.5
Lalb_Chr16g0383871 Lupinus albus HOM05D005621 ORTHO05D007248 9.7e-35 150.2 97 82.5
Sc05g0007560 Simmondsia chinensis HOM05D005621 ORTHO05D007248 9.7e-35 150.2 102 78.4
AUR62014837 Chenopodium quinoa HOM05D005621 ORTHO05D007248 1.3e-34 149.8 102 78.4
AUR62017033 Chenopodium quinoa HOM05D005621 ORTHO05D007248 1.3e-34 149.8 102 78.4
Sp4g16190 Schrenkiella parvula HOM05D005621 ORTHO05D007248 1.3e-34 149.8 101 79.2
THA.LOC104814219 Tarenaya hassleriana HOM05D005621 ORTHO05D007248 1.3e-34 149.8 99 81.8
Lalb_Chr09g0327691 Lupinus albus HOM05D005621 ORTHO05D007248 2.2e-34 149.1 97 80.4
Cc02_g13570 Coffea canephora HOM05D005621 ORTHO05D007248 2.8e-34 148.7 102 75.5
Aa31sc652G50 Aethionema arabicum HOM05D005621 ORTHO05D007248 4.8e-34 147.9 101 78.2
Aa31sc652G80 Aethionema arabicum HOM05D005621 ORTHO05D007248 4.8e-34 147.9 101 78.2
TWI63G1165 Tripterygium wilfordii HOM05D005621 ORTHO05D007248 6.3e-34 147.5 97 79.4
AL4G29560 Arabidopsis lyrata HOM05D005621 ORTHO05D007248 1.1e-33 146.7 100 79.0
EL10Ac8g20402 Beta vulgaris HOM05D005621 ORTHO05D007248 1.1e-33 146.7 102 77.5
Medtr4g088615 Medicago truncatula HOM05D005621 ORTHO05D007248 1.1e-33 146.7 97 79.4
Hund21218 Selenicereus undatus HOM05D005621 ORTHO05D007248 1.4e-33 146.4 102 72.5
SGA_v2.0_scaffold109G31092 Striga asiatica HOM05D005621 ORTHO05D007248 1.4e-33 146.4 101 77.2
BcaC02g07768 Brassica carinata HOM05D005621 ORTHO05D007248 4.1e-33 144.8 102 77.5
A04p26030 Brassica napus HOM05D005621 ORTHO05D007248 4.1e-33 144.8 102 77.5
C04p63370 Brassica napus HOM05D005621 ORTHO05D007248 4.1e-33 144.8 102 77.5
BolC4t27812H Brassica oleracea HOM05D005621 ORTHO05D007248 4.1e-33 144.8 102 77.5
BraA04t18105Z Brassica rapa HOM05D005621 ORTHO05D007248 4.1e-33 144.8 102 77.5
Carub.0004s1547 Capsella rubella HOM05D005621 ORTHO05D007248 4.1e-33 144.8 100 78.0
AT2G33800 Arabidopsis thaliana HOM05D005621 ORTHO05D007248 7.0e-33 144.1 100 78.0
CDE02G0355 Ceratophyllum demersum HOM05D005621 ORTHO05D007248 9.1e-33 143.7 97 77.3
CDE05G0202 Ceratophyllum demersum HOM05D005621 ORTHO05D007248 9.1e-33 143.7 97 77.3
CARHR127910 Cardamine hirsuta HOM05D005621 ORTHO05D007248 2.0e-32 142.5 102 76.5
Lj2A290T34 Lonicera japonica HOM05D005621 ORTHO05D007248 2.6e-32 142.1 97 76.3
Aqoxy1G02371 Aquilegia oxysepala HOM05D005621 ORTHO05D007248 5.9e-32 141.0 94 78.7
Phvul.002G229700 Phaseolus vulgaris HOM05D005621 ORTHO05D007248 5.9e-32 141.0 96 79.2
VMungo0251G0522 Vigna mungo HOM05D005621 ORTHO05D007248 1.3e-31 139.8 96 77.1
Psat7g115360 Pisum sativum HOM05D005621 ORTHO05D007248 2.9e-31 138.7 98 73.5
TPR.G16335 Trifolium pratense HOM05D005621 ORTHO05D007248 2.9e-31 138.7 99 72.7
Potri.011G053900 Populus trichocarpa HOM05D005621 ORTHO05D007248 3.8e-31 138.3 86 81.4
Actinidia16560 Actinidia chinensis HOM05D005621 ORTHO05D007248 8.8e-28 127.1 80 78.8
Rhsim02G0132300 Rhododendron simsii HOM05D005621 ORTHO05D007248 2.2e-26 122.5 83 69.9
Pp3c1_5050 Physcomitrium patens HOM05D005621 ORTHO05D007248 2.8e-26 122.1 81 75.3
Pp3c11_10680 Physcomitrium patens HOM05D005621 ORTHO05D007248 3.7e-26 121.7 81 74.1
AagrBONN_evm.TU.Sc2ySwM_344.1949 Anthoceros agrestis HOM05D005621 ORTHO05D007248 6.3e-26 120.9 76 78.9
AL4G11520 Arabidopsis lyrata HOM05D005621 ORTHO05D007248 8.2e-26 120.6 77 80.5
Mapoly0008s0189 Marchantia polymorpha HOM05D005621 ORTHO05D007248 1.4e-25 119.8 77 77.9
Pp3c7_18380 Physcomitrium patens HOM05D005621 ORTHO05D007248 1.4e-25 119.8 76 77.6
CBR_g50385 Chara braunii HOM05D005621 ORTHO05D007248 1.8e-25 119.4 84 69.0
vmacro15918 Vaccinium macrocarpon HOM05D005621 ORTHO05D007248 4.1e-25 118.2 79 70.9
SEGI_11788 Sequoiadendron giganteum HOM05D005621 ORTHO05D007248 4.5e-24 114.8 99 59.6
Os03g0452300 Oryza sativa ssp. japonica HOM05D005621 ORTHO05D007248 2.2e-23 112.5 87 63.2
Zm00001eb043240 Zea mays HOM05D005621 ORTHO05D007248 5.2e-20 101.3 75 64.0
Cc02_g13560 Coffea canephora HOM05D005621 ORTHO05D007248 5.7e-19 97.8 90 56.7
PRCOL_00000384 Prasinoderma coloniale HOM05D005621 ORTHO05D007248 1.2e-16 90.1 76 59.2
MCO06G207 Micromonas commoda HOM05D005621 ORTHO05D007248 2.2e-15 85.9 83 53.0
Cre16.g659950 Chlamydomonas reinhardtii HOM05D005621 ORTHO05D007248 1.2e-11 73.6 87 39.1


User provided reference genes

Program Settings