Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g29650 Fragaria vesca HOM05D005914 ORTHO05D007361 2.7e-241 838.2 411 100.0
FAN24G3193 Fragaria x ananassa HOM05D005914 ORTHO05D007361 1.8e-240 835.5 411 99.5
RcHm_v2.0_Chr6g0298621 Rosa chinensis HOM05D005914 ORTHO05D007361 1.6e-204 716.1 386 91.5
MD15G1120500 Malus domestica HOM05D005914 ORTHO05D007361 1.9e-178 629.4 383 82.0
Haze_21570 Corylus avellana HOM05D005914 ORTHO05D007361 2.1e-164 582.8 387 75.2
Cfa013180 Carpinus fangiana HOM05D005914 ORTHO05D007361 2.5e-162 575.9 383 74.7
Thecc.09G149100 Theobroma cacao HOM05D005914 ORTHO05D007361 6.2e-161 571.2 384 74.7
QL02p022744 Quercus lobata HOM05D005914 ORTHO05D007361 3.4e-159 565.5 381 74.5
CiPaw.07G220900 Carya illinoinensis HOM05D005914 ORTHO05D007361 1.9e-157 559.7 386 72.3
TWI63G0300 Tripterygium wilfordii HOM05D005914 ORTHO05D007361 4.2e-157 558.5 383 71.8
Ciclev10008576m.g Citrus clementina HOM05D005914 ORTHO05D007361 5.5e-157 558.1 392 72.4
GSVIVG01035808001 Vitis vinifera HOM05D005914 ORTHO05D007361 5.5e-157 558.1 388 71.9
CANSAT80G2406 Cannabis sativa HOM05D005914 ORTHO05D007361 2.1e-156 556.2 388 72.4
Potri.006G250800 Populus trichocarpa HOM05D005914 ORTHO05D007361 2.1e-156 556.2 387 71.6
Atru.chr7.2376 Acer truncatum HOM05D005914 ORTHO05D007361 3.5e-156 555.4 389 73.3
CANSAT80G0109 Cannabis sativa HOM05D005914 ORTHO05D007361 6.1e-156 554.7 388 72.2
Gohir.A08G236800 Gossypium hirsutum HOM05D005914 ORTHO05D007361 1.0e-155 553.9 387 71.8
Sabra06G0196100 Salix brachista HOM05D005914 ORTHO05D007361 3.0e-155 552.4 379 72.6
Gorai.004G274400 Gossypium raimondii HOM05D005914 ORTHO05D007361 1.1e-154 550.4 383 71.8
CSS0046358 Camellia sinensis var. sinensis HOM05D005914 ORTHO05D007361 3.3e-154 548.9 383 71.3
TAR625G1283 Trochodendron aralioides HOM05D005914 ORTHO05D007361 9.0e-152 540.8 393 69.2
Actinidia22373 Actinidia chinensis HOM05D005914 ORTHO05D007361 1.5e-151 540.0 383 70.0
Eucgr.C01789 Eucalyptus grandis HOM05D005914 ORTHO05D007361 2.0e-151 539.7 381 70.6
Thhalv10004397m.g Eutrema salsugineum HOM05D005914 ORTHO05D007361 7.7e-151 537.7 386 70.5
Glyma.15G054900 Glycine max HOM05D005914 ORTHO05D007361 3.8e-150 535.4 387 70.3
Carub.0006s2334 Capsella rubella HOM05D005914 ORTHO05D007361 5.0e-150 535.0 384 70.8
AL6G37280 Arabidopsis lyrata HOM05D005914 ORTHO05D007361 6.5e-150 534.6 384 70.6
ClCG08G013130 Citrullus lanatus HOM05D005914 ORTHO05D007361 8.5e-150 534.3 387 69.0
AT5G25480 Arabidopsis thaliana HOM05D005914 ORTHO05D007361 1.1e-149 533.9 376 71.5
MELO3C011235.2 Cucumis melo HOM05D005914 ORTHO05D007361 1.9e-149 533.1 388 68.6
Sp2g22050 Schrenkiella parvula HOM05D005914 ORTHO05D007361 1.9e-149 533.1 380 70.5
FAN27G2538 Fragaria x ananassa HOM05D005914 ORTHO05D007361 1.2e-148 530.4 373 77.2
THA.LOC104799221 Tarenaya hassleriana HOM05D005914 ORTHO05D007361 1.2e-148 530.4 387 69.0
PGR142G2371 Punica granatum HOM05D005914 ORTHO05D007361 2.1e-148 529.6 389 69.2
C07p42340 Brassica napus HOM05D005914 ORTHO05D007361 4.6e-148 528.5 385 69.4
Psat1g215880 Pisum sativum HOM05D005914 ORTHO05D007361 4.6e-148 528.5 378 71.2
Lj6g0019162 Lotus japonicus HOM05D005914 ORTHO05D007361 6.1e-148 528.1 376 71.3
A06p36180 Brassica napus HOM05D005914 ORTHO05D007361 1.4e-147 526.9 383 70.0
Aa31LG11G4850 Aethionema arabicum HOM05D005914 ORTHO05D007361 3.0e-147 525.8 378 70.4
Cc11_g01820 Coffea canephora HOM05D005914 ORTHO05D007361 3.9e-147 525.4 394 66.8
arahy.Tifrunner.gnm1.ann1.J9LH1L Arachis hypogaea HOM05D005914 ORTHO05D007361 5.1e-147 525.0 386 68.9
Lalb_Chr20g0122961 Lupinus albus HOM05D005914 ORTHO05D007361 1.1e-146 523.9 372 71.0
BraA06t26540Z Brassica rapa HOM05D005914 ORTHO05D007361 1.5e-146 523.5 376 70.7
Rhsim02G0194500 Rhododendron simsii HOM05D005914 ORTHO05D007361 2.5e-146 522.7 388 67.8
arahy.Tifrunner.gnm1.ann1.T9E77A Arachis hypogaea HOM05D005914 ORTHO05D007361 9.7e-146 520.8 386 68.4
HanXRQChr13g0402741 Helianthus annuus HOM05D005914 ORTHO05D007361 9.7e-146 520.8 376 68.1
Medtr2g009140 Medicago truncatula HOM05D005914 ORTHO05D007361 2.2e-145 519.6 376 69.7
Migut.E01476 Erythranthe guttata HOM05D005914 ORTHO05D007361 8.2e-145 517.7 372 68.5
Aqoxy7G02060 Aquilegia oxysepala HOM05D005914 ORTHO05D007361 1.1e-144 517.3 387 66.4
EL10Ac2g02591 Beta vulgaris HOM05D005914 ORTHO05D007361 3.1e-144 515.8 382 67.0
VMungo0540G0716 Vigna mungo HOM05D005914 ORTHO05D007361 3.1e-144 515.8 390 68.7
Duzib150G0329 Durio zibethinus HOM05D005914 ORTHO05D007361 1.2e-143 513.8 387 68.2
Ca_00145_v3 Cicer arietinum L. HOM05D005914 ORTHO05D007361 2.0e-143 513.1 378 68.5
CAN.G98.27 Capsicum annuum HOM05D005914 ORTHO05D007361 7.7e-143 511.1 376 67.0
Solyc08g067070.3 Solanum lycopersicum HOM05D005914 ORTHO05D007361 3.6e-140 502.3 386 66.6
Sopen08g021020 Solanum pennellii HOM05D005914 ORTHO05D007361 3.6e-140 502.3 384 66.9
SGA_v2.0_scaffold4G02186 Striga asiatica HOM05D005914 ORTHO05D007361 6.1e-140 501.5 378 65.3
PSO170G3156 Papaver somniferum HOM05D005914 ORTHO05D007361 8.8e-139 497.7 385 64.7
Lsat_1_v5_gn_6_22181 Lactuca sativa HOM05D005914 ORTHO05D007361 1.5e-138 496.9 368 67.1
Prupe.1G473200 Prunus persica HOM05D005914 ORTHO05D007361 1.5e-138 496.9 318 79.6
ECA233G4604 Erigeron canadensis HOM05D005914 ORTHO05D007361 1.3e-137 493.8 362 68.0
FAN20G2480 Fragaria x ananassa HOM05D005914 ORTHO05D007361 3.7e-137 492.3 370 72.2
DCAR_006234 Daucus carota HOM05D005914 ORTHO05D007361 4.8e-137 491.9 411 62.0
COL.COLO4_23983 Corchorus olitorius HOM05D005914 ORTHO05D007361 3.1e-136 489.2 387 67.2
Sed0010731 Sechium edule HOM05D005914 ORTHO05D007361 4.1e-136 488.8 363 66.7
Nn2g11936 Nelumbo nucifera HOM05D005914 ORTHO05D007361 3.5e-135 485.7 355 68.7
Gohir.D08G257400 Gossypium hirsutum HOM05D005914 ORTHO05D007361 7.7e-135 484.6 383 66.1
Nitab4.5_0000151g0200 Nicotiana tabacum HOM05D005914 ORTHO05D007361 1.9e-133 479.9 388 63.1
arahy.Tifrunner.gnm1.ann1.71PCZ9 Arachis hypogaea HOM05D005914 ORTHO05D007361 4.7e-132 475.3 356 67.7
Nitab4.5_0001669g0040 Nicotiana tabacum HOM05D005914 ORTHO05D007361 4.7e-132 475.3 384 63.3
CDE04G0852 Ceratophyllum demersum HOM05D005914 ORTHO05D007361 6.3e-129 464.9 395 59.2
unitig_747.g21653 Utricularia gibba HOM05D005914 ORTHO05D007361 1.2e-127 460.7 380 60.3
BolC7t44763H Brassica oleracea HOM05D005914 ORTHO05D007361 1.6e-127 460.3 348 67.5
HPP92_012620 Vanilla planifolia HOM05D005914 ORTHO05D007361 2.2e-126 456.4 384 60.2
Zm00001eb358040 Zea mays HOM05D005914 ORTHO05D007361 1.0e-123 447.6 379 61.5
SalBow2G3472 Salvia bowleyana HOM05D005914 ORTHO05D007361 1.2e-122 444.1 377 62.1
Peaxi162Scf00341g00624 Petunia axillaris HOM05D005914 ORTHO05D007361 4.1e-120 435.6 335 65.7
AUR62024878 Chenopodium quinoa HOM05D005914 ORTHO05D007361 1.7e-118 430.3 360 61.7
TPR.G25250 Trifolium pratense HOM05D005914 ORTHO05D008190 6.1e-116 421.8 308 68.2
Manes.16G119400 Manihot esculenta HOM05D005914 ORTHO05D007361 3.7e-113 412.5 316 66.1
Dinv11618 Davidia involucrata HOM05D005914 ORTHO05D007361 1.1e-112 411.0 300 68.0
CsaV3_2G031850 Cucumis sativus L. HOM05D005914 ORTHO05D007361 2.3e-107 393.3 396 53.3
Mapoly0011s0185 Marchantia polymorpha HOM05D005914 ORTHO05D007361 6.4e-105 385.2 452 47.3
Pp3c12_2410 Physcomitrium patens HOM05D005914 ORTHO05D007361 1.9e-101 373.6 463 44.7
SMO146G0196 Selaginella moellendorffii HOM05D005914 ORTHO05D007361 3.3e-101 372.9 378 51.6
Phvul.006G205000 Phaseolus vulgaris HOM05D005914 ORTHO05D007361 1.8e-99 367.1 297 66.0
ATR0815G040 Amborella trichopoda HOM05D005914 ORTHO05D007361 5.8e-98 362.1 341 55.7
AUR62030669 Chenopodium quinoa HOM05D005914 ORTHO05D007361 2.4e-96 356.7 314 59.2
MD08G1143700 Malus domestica HOM05D005914 ORTHO05D007361 1.1e-93 347.8 280 65.4
PSO455G0041 Papaver somniferum HOM05D005914 ORTHO05D007361 9.5e-93 344.7 298 60.7
RcHm_v2.0_Chr1g0355831 Rosa chinensis HOM05D005914 ORTHO05D007361 1.2e-87 327.8 253 68.0
CBR_g3173 Chara braunii HOM05D005914 ORTHO05D007361 1.7e-81 307.4 543 37.6
Os01g0612000 Oryza sativa ssp. japonica HOM05D005914 ORTHO05D007361 5.1e-78 295.8 279 55.9
CARHR187910 Cardamine hirsuta HOM05D005914 ORTHO05D007361 3.3e-77 293.1 167 82.0
MSTRG.13986 Avicennia marina HOM05D005914 ORTHO05D007361 1.2e-76 291.2 241 61.8
Cpa.g.sc91.41 Carica papaya HOM05D005914 ORTHO05D007361 3.6e-76 289.7 171 81.3
MBI04_g29855_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 2.0e-74 283.9 263 58.2
PRCOL_00003212 Prasinoderma coloniale HOM05D005914 ORTHO05D007361 2.1e-71 273.9 419 39.6
MCO14G456 Micromonas commoda HOM05D005914 ORTHO05D007361 8.7e-70 268.5 389 39.8
AagrBONN_evm.TU.Sc2ySwM_228.810 Anthoceros agrestis HOM05D005914 ORTHO05D007361 2.8e-68 263.5 301 48.8
MD15G1439700 Malus domestica HOM05D005914 ORTHO05D007361 4.8e-68 262.7 404 43.6
MBI04_g46184_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 3.1e-67 260.0 343 46.4
Lj7C718G14 Lonicera japonica HOM05D005914 ORTHO05D007361 6.4e-65 252.3 272 50.7
Ah.12g063960 Amaranthus hybridus HOM05D005914 ORTHO05D007361 1.9e-64 250.8 153 77.8
Hma1.2p1_0000F.1_g000780 Hydrangea macrophylla HOM05D005914 ORTHO05D007361 2.8e-52 210.3 217 54.8
Glyma.08G177800 Glycine max HOM05D005914 ORTHO05D007361 1.1e-48 198.4 198 53.0
MCO11G560 Micromonas commoda HOM05D005914 ORTHO05D007361 2.0e-42 177.6 400 31.8
SEGI_35502 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 1.0e-41 175.3 111 73.9
Nitab4.5_0003498g0080 Nicotiana tabacum HOM05D005914 ORTHO05D007361 7.2e-40 169.1 114 72.8
CAN.G374.12 Capsicum annuum HOM05D005914 ORTHO05D007361 2.0e-34 151.0 309 34.6
PGR031G2948 Punica granatum HOM05D005914 ORTHO05D007361 6.5e-33 146.0 82 81.7
Sc09g0008460 Simmondsia chinensis HOM05D005914 ORTHO05D007361 6.1e-31 139.4 141 50.4
Cre12.g484600 Chlamydomonas reinhardtii HOM05D005914 ORTHO05D007361 3.0e-30 137.1 174 43.1
Oeu033137.1 Olea europaea HOM05D005914 ORTHO05D007361 1.7e-28 131.3 93 69.9
Sc09g0008580 Simmondsia chinensis HOM05D005914 ORTHO05D007361 9.1e-27 125.6 80 73.8
Sc09g0008440 Simmondsia chinensis HOM05D005914 ORTHO05D007361 4.5e-26 123.2 80 70.0
Sc09g0008450 Simmondsia chinensis HOM05D005914 ORTHO05D007361 8.5e-25 119.0 80 72.5
TPR.G22731 Trifolium pratense HOM05D005914 ORTHO05D007361 3.7e-20 103.6 66 75.8
Aqoxy7G02061 Aquilegia oxysepala HOM05D005914 ORTHO05D007361 1.8e-19 101.3 61 72.1
MD08G1143600 Malus domestica HOM05D005914 ORTHO05D007361 6.5e-17 92.8 66 69.7
SEGI_14251 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 1.9e-16 91.3 64 67.2
MBI04_g10409_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 2.7e-15 87.4 52 71.2
MBI04_g46185_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 2.7e-15 87.4 52 71.2
SEGI_16557 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 1.0e-14 85.5 58 69.0
Sc09g0008540 Simmondsia chinensis HOM05D002899 ORTHO05D003850 1.8e-14 84.7 49 77.6
Ah.12g063950 Amaranthus hybridus HOM05D005914 ORTHO05D007361 2.2e-12 77.8 125 36.0
MD08G1144900 Malus domestica HOM05D005914 ORTHO05D007361 3.5e-10 70.5 84 44.0
Lj7A718T66 Lonicera japonica HOM05D005914 ORTHO05D007361 1.1e-08 65.5 73 49.3
Sc09g0008600 Simmondsia chinensis HOM05D005914 ORTHO05D007361 1.5e-08 65.1 66 56.1
Glyma.08G177700 Glycine max HOM05D005914 ORTHO05D007361 1.0e-06 58.9 28 89.3
Ah.12g063940 Amaranthus hybridus HOM05D005914 ORTHO05D007361 1.8e-06 58.2 39 66.7
MD08G1143500 Malus domestica HOM05D005914 ORTHO05D007361 1.8e-06 58.2 66 56.1


User provided reference genes

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