Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g27140 Fragaria vesca HOM05D010408 ORTHO05D197760 1.3e-94 349.7 175 100.0
FAN10G2119 Fragaria x ananassa HOM05D010408 ORTHO05D210325 8.0e-33 144.4 302 37.4
FAN08G1562 Fragaria x ananassa HOM05D010408 ORTHO05D035277 9.8e-23 110.9 56 94.6
FvH4_1g27141 Fragaria vesca HOM05D010408 ORTHO05D196529 1.1e-21 107.5 56 92.9
FAN19G1910 Fragaria x ananassa HOM05D010408 ORTHO05D015232 1.1e-21 107.5 56 92.9
FAN03G1246 Fragaria x ananassa HOM05D010408 ORTHO05D015232 2.4e-21 106.3 131 53.4
FvH4_7g06405 Fragaria vesca HOM05D010408 ORTHO05D035277 1.3e-19 100.5 57 87.7
FAN06G3152 Fragaria x ananassa HOM05D010408 ORTHO05D015232 1.5e-18 97.1 49 93.9
FvH4_3g27323 Fragaria vesca HOM05D010408 ORTHO05D015232 1.9e-18 96.7 49 95.9
FvH4_7g05920 Fragaria vesca HOM05D010408 ORTHO05D035277 7.3e-18 94.7 54 85.2
FAN08G1951 Fragaria x ananassa HOM05D010408 ORTHO05D000078 7.3e-18 94.7 107 54.2
FAN01G0821 Fragaria x ananassa HOM05D010408 ORTHO05D015232 4.7e-17 92.0 54 83.3
FvH4_4g11064 Fragaria vesca HOM05D010408 ORTHO05D015232 6.2e-17 91.7 49 91.8
FAN10G0574 Fragaria x ananassa HOM05D010408 ORTHO05D035659 3.4e-15 85.9 104 47.1
FAN04G2746 Fragaria x ananassa HOM05D010408 ORTHO05D199897 4.4e-15 85.5 57 75.4
FAN04G1625 Fragaria x ananassa HOM05D010408 ORTHO05D207241 5.4e-13 78.6 57 73.7
TWI56G0090 Tripterygium wilfordii HOM05D001780 ORTHO05D004373 2.0e-07 60.1 33 78.8
SEGI_27348 Sequoiadendron giganteum HOM05D001780 ORTHO05D004373 7.6e-07 58.2 34 76.5
AUR62002268 Chenopodium quinoa HOM05D001780 ORTHO05D004373 1.3e-06 57.4 33 78.8
AUR62015426 Chenopodium quinoa HOM05D001780 ORTHO05D004373 1.3e-06 57.4 33 78.8
FvH4_4g11470 Fragaria vesca HOM05D001780 ORTHO05D004373 1.3e-06 57.4 33 78.8
FAN07G0072 Fragaria x ananassa HOM05D001780 ORTHO05D004373 1.3e-06 57.4 33 78.8
FAN17G0725 Fragaria x ananassa HOM05D001780 ORTHO05D004373 1.3e-06 57.4 33 78.8
FAN22G0035 Fragaria x ananassa HOM05D001780 ORTHO05D004373 1.3e-06 57.4 33 78.8
Lalb_Chr09g0320441 Lupinus albus HOM05D001780 ORTHO05D004373 1.3e-06 57.4 33 75.8
Dinv33217 Davidia involucrata HOM05D001780 ORTHO05D004373 2.2e-06 56.6 39 69.2
arahy.Tifrunner.gnm1.ann1.ZN5I3T Arachis hypogaea HOM05D000189 ORTHO05D007954 2.9e-06 56.2 79 45.6
BcaNung01699 Brassica carinata HOM05D001780 ORTHO05D004373 2.9e-06 56.2 33 75.8
C07p51730 Brassica napus HOM05D001780 ORTHO05D004373 2.9e-06 56.2 96 40.6
FAN18G3098 Fragaria x ananassa HOM05D010408 ORTHO05D203810 2.9e-06 56.2 39 74.4
Nitab4.5_0001198g0100 Nicotiana tabacum HOM05D001780 ORTHO05D004373 2.9e-06 56.2 59 50.8
Atru.chr12.1705 Acer truncatum HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
Atru.chr3.1561 Acer truncatum HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
Atru.chr3.1583 Acer truncatum HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
Actinidia34617 Actinidia chinensis HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
Actinidia35963 Actinidia chinensis HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
Aa31LG10G13700 Aethionema arabicum HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
AL7G50050 Arabidopsis lyrata HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
MSTRG.21338 Avicennia marina HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
EL10Ac3g05575 Beta vulgaris HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
BcaB06g27675 Brassica carinata HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
BcaC02g08915 Brassica carinata HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
BcaNung00801 Brassica carinata HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
A03p53410 Brassica napus HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
A04p14990 Brassica napus HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
C04p49170 Brassica napus HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
BolC4t26502H Brassica oleracea HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
BolC7t45663H Brassica oleracea HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
BraA03t14408Z Brassica rapa HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
BraA04t17141Z Brassica rapa HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
CANSAT78G0939 Cannabis sativa HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
Carub.0006s2892 Capsella rubella HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
CAN.G1186.25 Capsicum annuum HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
Cfa015768 Carpinus fangiana HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
CiPaw.01G102300 Carya illinoinensis HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
CDE05G1969 Ceratophyllum demersum HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
ClCG07G015560 Citrullus lanatus HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
Ciclev10018576m.g Citrus clementina HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
COL.COLO4_09454 Corchorus olitorius HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
COL.COLO4_14418 Corchorus olitorius HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
COL.COLO4_24691 Corchorus olitorius HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
Haze_00734 Corylus avellana HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
MELO3C017728.2 Cucumis melo HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
CsaV3_4G003190 Cucumis sativus L. HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
DCAR_019070 Daucus carota HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
Dinv15122 Davidia involucrata HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
Dinv44242 Davidia involucrata HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
Duzib106G1771 Durio zibethinus HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
Gohir.A01G231000 Gossypium hirsutum HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
Gohir.D01G221100 Gossypium hirsutum HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
Gorai.002G267700 Gossypium raimondii HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
Lj3g0013099 Lotus japonicus HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
MD04G1037200 Malus domestica HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
MD09G1065200 Malus domestica HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
Nn1g08648 Nelumbo nucifera HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
Nitab4.5_0000143g0350 Nicotiana tabacum HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
Oeu061694.1 Olea europaea HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
Os06g0645400 Oryza sativa ssp. japonica HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
Peaxi162Scf00558g00043 Petunia axillaris HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
Potri.007G126501 Populus trichocarpa HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
Potri.017G033200 Populus trichocarpa HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
Prupe.1G186600 Prunus persica HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
RcHm_v2.0_Chr4g0408181 Rosa chinensis HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
Sabra07G0102600 Salix brachista HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
Sabra17G0020800 Salix brachista HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
Sp7g00280 Schrenkiella parvula HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
Sed0001787 Sechium edule HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
Hund03144 Selenicereus undatus HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
SEGI_14552 Sequoiadendron giganteum HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
Sc20g0004730 Simmondsia chinensis HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
Solyc11g012140.2 Solanum lycopersicum HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
Sopen11g006930 Solanum pennellii HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
PGSC0003DMG400013343 Solanum tuberosum HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
SGA_v2.0_scaffold29G12214 Striga asiatica HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
THA.LOC104803625 Tarenaya hassleriana HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
Thecc.05G003300 Theobroma cacao HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
TWI63G0569 Tripterygium wilfordii HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
TAR362G1083 Trochodendron aralioides HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
unitig_0.g306 Utricularia gibba HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
vmacro00605 Vaccinium macrocarpon HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
GSVIVG01010735001 Vitis vinifera HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
Zm00001eb275200 Zea mays HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
Zm00001eb386920 Zea mays HOM05D001780 ORTHO05D004373 3.8e-06 55.8 33 75.8
AagrBONN_evm.TU.Sc2ySwM_368.2029 Anthoceros agrestis HOM05D001780 ORTHO05D004373 4.9e-06 55.5 33 75.8
FvH4_5g27942 Fragaria vesca HOM05D000138 ORTHO05D000078 4.9e-06 55.5 41 70.7
MBI18_g09771_MAGBIO Magnolia biondii HOM05D001780 ORTHO05D004373 4.9e-06 55.5 33 72.7
Manes.04G040600 Manihot esculenta HOM05D001780 ORTHO05D004373 4.9e-06 55.5 33 72.7
Lsat_1_v5_gn_5_76141 Lactuca sativa HOM05D001780 ORTHO05D004373 6.4e-06 55.1 34 73.5
AagrBONN_evm.TU.Sc2ySwM_362.2885 Anthoceros agrestis HOM05D001780 ORTHO05D004373 8.4e-06 54.7 33 75.8
arahy.Tifrunner.gnm1.ann1.05K2HA Arachis hypogaea HOM05D001780 ORTHO05D004373 8.4e-06 54.7 33 72.7
arahy.Tifrunner.gnm1.ann1.AHZV2Y Arachis hypogaea HOM05D001780 ORTHO05D004373 8.4e-06 54.7 33 72.7
Ca_26060_v3 Cicer arietinum L. HOM05D001780 ORTHO05D004373 8.4e-06 54.7 33 72.7
FAN01G2418 Fragaria x ananassa HOM05D019674 ORTHO05D035684 8.4e-06 54.7 63 55.6
Glyma.11G094300 Glycine max HOM05D001780 ORTHO05D004373 8.4e-06 54.7 33 72.7
Glyma.12G020700 Glycine max HOM05D001780 ORTHO05D004373 8.4e-06 54.7 33 72.7
Medtr4g076850 Medicago truncatula HOM05D001780 ORTHO05D004373 8.4e-06 54.7 33 72.7
Phvul.011G023400 Phaseolus vulgaris HOM05D001780 ORTHO05D004373 8.4e-06 54.7 33 72.7
Psat7g172640 Pisum sativum HOM05D001780 ORTHO05D004373 8.4e-06 54.7 33 72.7
Rhsim05G0075700 Rhododendron simsii HOM05D001780 ORTHO05D004373 8.4e-06 54.7 33 72.7
TPR.G13745 Trifolium pratense HOM05D001780 ORTHO05D004373 8.4e-06 54.7 33 72.7
VMungo1127G1244 Vigna mungo HOM05D001780 ORTHO05D004373 8.4e-06 54.7 33 72.7


User provided reference genes

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