Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g23541 Fragaria vesca HOM05D001993 ORTHO05D017206 1.0e-31 139.4 68 100.0
FvH4_1g23550 Fragaria vesca HOM05D001993 ORTHO05D004040 2.2e-23 111.7 56 94.6
FvH4_2g04971 Fragaria vesca HOM05D001993 ORTHO05D004040 1.5e-22 109.0 56 92.9
FAN20G0035 Fragaria x ananassa HOM05D001993 ORTHO05D004040 1.5e-22 109.0 56 92.9
FAN23G0437 Fragaria x ananassa HOM05D001993 ORTHO05D004040 1.5e-22 109.0 56 92.9
RcHm_v2.0_Chr2g0133821 Rosa chinensis HOM05D001993 ORTHO05D004040 1.9e-22 108.6 56 91.1
vmacro19031 Vaccinium macrocarpon HOM05D001993 ORTHO05D004040 3.2e-22 107.8 56 91.1
MD17G1218700 Malus domestica HOM05D001993 ORTHO05D004040 4.2e-22 107.5 56 91.1
Prupe.3G094300 Prunus persica HOM05D001993 ORTHO05D004040 4.2e-22 107.5 56 91.1
HanXRQChr16g0510241 Helianthus annuus HOM05D001993 ORTHO05D004040 2.1e-21 105.1 56 87.5
HanXRQChr06g0181061 Helianthus annuus HOM05D001993 ORTHO05D004040 4.7e-21 104.0 56 85.7
CSS0006698 Camellia sinensis var. sinensis HOM05D001993 ORTHO05D004040 6.1e-21 103.6 56 85.7
CSS0034242 Camellia sinensis var. sinensis HOM05D001993 ORTHO05D004040 6.1e-21 103.6 56 85.7
CSS0044698 Camellia sinensis var. sinensis HOM05D001993 ORTHO05D004040 8.0e-21 103.2 56 85.7
Dinv38158 Davidia involucrata HOM05D001993 ORTHO05D004040 8.0e-21 103.2 56 83.9
ECA232G4796 Erigeron canadensis HOM05D001993 ORTHO05D004040 8.0e-21 103.2 56 85.7
ECA240G4532 Erigeron canadensis HOM05D001993 ORTHO05D004040 8.0e-21 103.2 56 85.7
Medtr2g104610 Medicago truncatula HOM05D001993 ORTHO05D004040 8.0e-21 103.2 56 85.7
Peaxi162Scf00045g02262 Petunia axillaris HOM05D001993 ORTHO05D004040 1.0e-20 102.8 56 83.9
Sabra01G0154500 Salix brachista HOM05D001993 ORTHO05D004040 1.0e-20 102.8 56 85.7
PGSC0003DMG400030577 Solanum tuberosum HOM05D001993 ORTHO05D004040 1.0e-20 102.8 56 85.7
TPR.G16048 Trifolium pratense HOM05D001993 ORTHO05D004040 1.0e-20 102.8 56 83.9
TPR.G19151 Trifolium pratense HOM05D001993 ORTHO05D004040 1.0e-20 102.8 56 83.9
vmacro06416 Vaccinium macrocarpon HOM05D001993 ORTHO05D004040 1.0e-20 102.8 55 87.3
Actinidia08952 Actinidia chinensis HOM05D001993 ORTHO05D004040 1.4e-20 102.4 56 85.7
Lsat_1_v5_gn_8_105360 Lactuca sativa HOM05D001993 ORTHO05D004040 1.4e-20 102.4 56 85.7
Phvul.005G181600 Phaseolus vulgaris HOM05D001993 ORTHO05D004040 1.4e-20 102.4 56 85.7
Solyc05g009030.4 Solanum lycopersicum HOM05D001993 ORTHO05D004040 1.4e-20 102.4 56 85.7
CANSAT78G2160 Cannabis sativa HOM05D001993 ORTHO05D004040 1.8e-20 102.1 56 83.9
CARHR125330 Cardamine hirsuta HOM05D001993 ORTHO05D004040 1.8e-20 102.1 56 85.7
Ca_01033_v3 Cicer arietinum L. HOM05D001993 ORTHO05D004040 1.8e-20 102.1 56 83.9
Ca_30253_v3 Cicer arietinum L. HOM05D001993 ORTHO05D004040 1.8e-20 102.1 56 83.9
DCAR_021360 Daucus carota HOM05D001993 ORTHO05D004040 1.8e-20 102.1 56 83.9
Hma1.2p1_0135F.1_g061690 Hydrangea macrophylla HOM05D001993 ORTHO05D004040 1.8e-20 102.1 56 85.7
Rhsim08G0209300 Rhododendron simsii HOM05D001993 ORTHO05D004040 1.8e-20 102.1 56 83.9
Atru.chr13.1967 Acer truncatum HOM05D001993 ORTHO05D004040 2.3e-20 101.7 56 83.9
Lalb_Chr24g0395371 Lupinus albus HOM05D001993 ORTHO05D004040 2.3e-20 101.7 56 82.1
Psat5g304040 Pisum sativum HOM05D001993 ORTHO05D004040 2.3e-20 101.7 56 82.1
Potri.001G185600 Populus trichocarpa HOM05D001993 ORTHO05D004040 2.3e-20 101.7 56 83.9
Lj1A617G82 Lonicera japonica HOM05D001993 ORTHO05D004040 3.0e-20 101.3 56 85.7
Nn8g39686 Nelumbo nucifera HOM05D001993 ORTHO05D004040 3.0e-20 101.3 56 83.9
Oeu055805.1 Olea europaea HOM05D001993 ORTHO05D004040 3.0e-20 101.3 56 83.9
Ca_01035_v3 Cicer arietinum L. HOM05D001993 ORTHO05D004040 4.0e-20 100.9 56 83.9
COL.COLO4_10077 Corchorus olitorius HOM05D001993 ORTHO05D004040 4.0e-20 100.9 56 83.9
MELO3C017853.2 Cucumis melo HOM05D001993 ORTHO05D004040 4.0e-20 100.9 56 87.5
Dinv23318 Davidia involucrata HOM05D001993 ORTHO05D004040 4.0e-20 100.9 56 82.1
Glyma.11G079000 Glycine max HOM05D001993 ORTHO05D004040 4.0e-20 100.9 55 81.8
Glyma.13G367900 Glycine max HOM05D001993 ORTHO05D004040 4.0e-20 100.9 55 81.8
Nitab4.5_0002481g0070 Nicotiana tabacum HOM05D001993 ORTHO05D004040 4.0e-20 100.9 56 83.9
Sopen05g004770 Solanum pennellii HOM05D001993 ORTHO05D004040 4.0e-20 100.9 56 83.9
Aqoxy1G01546 Aquilegia oxysepala HOM05D001993 ORTHO05D004040 5.2e-20 100.5 56 83.9
CAN.G610.41 Capsicum annuum HOM05D001993 ORTHO05D004040 5.2e-20 100.5 56 83.9
Cpa.g.sc52.151 Carica papaya HOM05D001993 ORTHO05D004040 5.2e-20 100.5 56 82.1
Cfa001917 Carpinus fangiana HOM05D001993 ORTHO05D004040 5.2e-20 100.5 56 83.9
AT1G80560 Arabidopsis thaliana HOM05D001993 ORTHO05D004040 6.8e-20 100.1 56 83.9
MSTRG.22778 Avicennia marina HOM05D001993 ORTHO05D004040 6.8e-20 100.1 56 82.1
A07p45110 Brassica napus HOM05D001993 ORTHO05D004040 6.8e-20 100.1 56 83.9
Carub.0002s2699 Capsella rubella HOM05D001993 ORTHO05D004040 6.8e-20 100.1 56 83.9
Thhalv10018649m.g Eutrema salsugineum HOM05D001993 ORTHO05D004040 6.8e-20 100.1 56 83.9
Glyma.15G005400 Glycine max HOM05D001993 ORTHO05D004040 6.8e-20 100.1 55 81.8
Manes.11G062800 Manihot esculenta HOM05D001993 ORTHO05D004040 6.8e-20 100.1 56 82.1
Nitab4.5_0000315g0220 Nicotiana tabacum HOM05D001993 ORTHO05D004040 6.8e-20 100.1 56 83.9
Sed0006349 Sechium edule HOM05D001993 ORTHO05D004040 6.8e-20 100.1 56 85.7
GSVIVG01023010001 Vitis vinifera HOM05D001993 ORTHO05D004040 6.8e-20 100.1 56 83.9
arahy.Tifrunner.gnm1.ann1.MFGQ7M Arachis hypogaea HOM05D001993 ORTHO05D004040 8.8e-20 99.8 56 80.4
arahy.Tifrunner.gnm1.ann1.S9NP0T Arachis hypogaea HOM05D001993 ORTHO05D004040 8.8e-20 99.8 56 80.4
ClCG07G012340 Citrullus lanatus HOM05D001993 ORTHO05D004040 8.8e-20 99.8 56 85.7
PSO478G5069 Papaver somniferum HOM05D001993 ORTHO05D004040 8.8e-20 99.8 56 80.4
PSO541G0229 Papaver somniferum HOM05D001993 ORTHO05D004040 8.8e-20 99.8 56 80.4
PSO675G4738 Papaver somniferum HOM05D001993 ORTHO05D004040 8.8e-20 99.8 56 80.4
QL05p033532 Quercus lobata HOM05D001993 ORTHO05D004040 8.8e-20 99.8 56 82.1
SalBow7G1960 Salvia bowleyana HOM05D001993 ORTHO05D004040 8.8e-20 99.8 56 82.1
SGA_v2.0_scaffold37G14738 Striga asiatica HOM05D001993 ORTHO05D004040 8.8e-20 99.8 56 82.1
THA.LOC104808191 Tarenaya hassleriana HOM05D001993 ORTHO05D004040 1.2e-19 99.4 56 82.1
AL2G40900 Arabidopsis lyrata HOM05D001993 ORTHO05D004040 1.5e-19 99.0 56 82.1
C06p53940 Brassica napus HOM05D001993 ORTHO05D004040 1.5e-19 99.0 56 82.1
CsaV3_4G001800 Cucumis sativus L. HOM05D001993 ORTHO05D004040 1.5e-19 99.0 56 85.7
BcaB05g25258 Brassica carinata HOM05D001993 ORTHO05D004040 2.0e-19 98.6 56 83.9
BraA07t32014Z Brassica rapa HOM05D001993 ORTHO05D004040 2.0e-19 98.6 56 83.9
Sed0011728 Sechium edule HOM05D001993 ORTHO05D004040 2.0e-19 98.6 56 83.9
BolC6t40408H Brassica oleracea HOM05D001993 ORTHO05D004040 3.4e-19 97.8 56 80.4
Ciclev10025744m.g Citrus clementina HOM05D001993 ORTHO05D004040 3.4e-19 97.8 56 80.4
Sp5g35220 Schrenkiella parvula HOM05D001993 ORTHO05D004040 3.4e-19 97.8 56 82.1
TAR636G1963 Trochodendron aralioides HOM05D001993 ORTHO05D004040 3.4e-19 97.8 56 82.1
Zm00001eb076030 Zea mays HOM05D001993 ORTHO05D004040 3.4e-19 97.8 56 80.4
BcaC03g15953 Brassica carinata HOM05D001993 ORTHO05D004040 4.4e-19 97.4 56 82.1
A02p23450 Brassica napus HOM05D001993 ORTHO05D004040 4.4e-19 97.4 56 82.1
C02p37150 Brassica napus HOM05D001993 ORTHO05D004040 4.4e-19 97.4 56 82.1
BolC2t09727H Brassica oleracea HOM05D001993 ORTHO05D004040 4.4e-19 97.4 56 82.1
BraA02t07337Z Brassica rapa HOM05D001993 ORTHO05D004040 4.4e-19 97.4 56 82.1
THA.LOC104812454 Tarenaya hassleriana HOM05D001993 ORTHO05D004040 4.4e-19 97.4 56 80.4
VMungo1080G0486 Vigna mungo HOM05D001993 ORTHO05D004040 4.4e-19 97.4 56 80.4
Aqoxy6G02753 Aquilegia oxysepala HOM05D001993 ORTHO05D004040 5.7e-19 97.1 56 80.4
C02p06590 Brassica napus HOM05D001993 ORTHO05D004040 5.7e-19 97.1 56 78.6
BolC2t06605H Brassica oleracea HOM05D001993 ORTHO05D004040 5.7e-19 97.1 56 78.6
CiPaw.01G251500 Carya illinoinensis HOM05D001993 ORTHO05D004040 5.7e-19 97.1 56 82.1
Duzib235G0702 Durio zibethinus HOM05D001993 ORTHO05D004040 5.7e-19 97.1 56 78.6
Lj3g0004208 Lotus japonicus HOM05D001993 ORTHO05D004040 5.7e-19 97.1 56 78.6
TAR625G0460 Trochodendron aralioides HOM05D001993 ORTHO05D004040 5.7e-19 97.1 56 80.4
Aa31LG4G830 Aethionema arabicum HOM05D001993 ORTHO05D004040 7.5e-19 96.7 56 80.4
Aa31LG4G840 Aethionema arabicum HOM05D002499 ORTHO05D004040 7.5e-19 96.7 56 80.4
Lalb_Chr14g0373941 Lupinus albus HOM05D001993 ORTHO05D004040 7.5e-19 96.7 56 80.4
Actinidia25438 Actinidia chinensis HOM05D001993 ORTHO05D004040 9.7e-19 96.3 56 80.4
Gohir.A10G072700 Gossypium hirsutum HOM05D001993 ORTHO05D004040 1.3e-18 95.9 56 76.8
Sp6g29830 Schrenkiella parvula HOM05D001993 ORTHO05D004040 1.7e-18 95.5 56 76.8
SpUn0049_0030 Schrenkiella parvula HOM05D001993 ORTHO05D004040 1.7e-18 95.5 56 76.8
unitig_62.g23356 Utricularia gibba HOM05D001993 ORTHO05D004040 1.7e-18 95.5 56 78.6
Zm00001eb434270 Zea mays HOM05D001993 ORTHO05D004040 1.7e-18 95.5 56 78.6
A02p02370 Brassica napus HOM05D001993 ORTHO05D004040 2.2e-18 95.1 56 76.8
BraA02t05207Z Brassica rapa HOM05D001993 ORTHO05D004040 2.2e-18 95.1 56 76.8
CARHR199140 Cardamine hirsuta HOM05D001993 ORTHO05D004040 2.2e-18 95.1 56 75.0
Thhalv10013695m.g Eutrema salsugineum HOM05D001993 ORTHO05D004040 2.2e-18 95.1 56 75.0
MBI02_g33734_MAGBIO Magnolia biondii HOM05D001993 ORTHO05D004040 2.2e-18 95.1 56 78.6
MBI02_g44629_MAGBIO Magnolia biondii HOM05D001993 ORTHO05D004040 2.2e-18 95.1 56 78.6
PGR102G0990 Punica granatum HOM05D001993 ORTHO05D004040 2.2e-18 95.1 56 80.4
Sc11g0002740 Simmondsia chinensis HOM05D001993 ORTHO05D004040 2.2e-18 95.1 56 80.4
Eucgr.F03933 Eucalyptus grandis HOM05D001993 ORTHO05D004040 2.8e-18 94.7 56 80.4
SMO201G0043 Selaginella moellendorffii HOM05D001993 ORTHO05D004040 2.8e-18 94.7 56 76.8
Thecc.06G035700 Theobroma cacao HOM05D001993 ORTHO05D004040 2.8e-18 94.7 56 76.8
Gohir.D10G078300 Gossypium hirsutum HOM05D001993 ORTHO05D004040 3.7e-18 94.4 56 75.0
Gorai.011G085100 Gossypium raimondii HOM05D001993 ORTHO05D004040 3.7e-18 94.4 56 75.0
PSO017G5288 Papaver somniferum HOM05D001993 ORTHO05D004040 3.7e-18 94.4 56 76.8
AT1G31180 Arabidopsis thaliana HOM05D001993 ORTHO05D004040 4.8e-18 94.0 56 73.2
Os03g0655700 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D004040 4.8e-18 94.0 56 78.6
ATR0165G046 Amborella trichopoda HOM05D001993 ORTHO05D004040 6.3e-18 93.6 56 75.0
TWI18G1017 Tripterygium wilfordii HOM05D001993 ORTHO05D004040 6.3e-18 93.6 56 75.0
AL1G50860 Arabidopsis lyrata HOM05D001993 ORTHO05D004040 8.3e-18 93.2 56 73.2
Cc11_g03270 Coffea canephora HOM05D001993 ORTHO05D004040 1.1e-17 92.8 55 81.8
Aa31LG11G14990 Aethionema arabicum HOM05D001993 ORTHO05D004040 1.4e-17 92.4 56 73.2
HPP92_009455 Vanilla planifolia HOM05D001993 ORTHO05D004040 2.4e-17 91.7 56 73.2
vmacro17160 Vaccinium macrocarpon HOM05D001993 ORTHO05D000156 3.1e-17 91.3 56 78.6
AL6G24870 Arabidopsis lyrata HOM05D001993 ORTHO05D004040 4.1e-17 90.9 56 71.4
AT5G14200 Arabidopsis thaliana HOM05D001993 ORTHO05D004040 5.3e-17 90.5 56 71.4
AUR62011462 Chenopodium quinoa HOM05D001993 ORTHO05D004040 5.3e-17 90.5 53 77.4
AUR62016593 Chenopodium quinoa HOM05D001993 ORTHO05D004040 5.3e-17 90.5 53 77.4
Haze_16625 Corylus avellana HOM05D001993 ORTHO05D004040 5.3e-17 90.5 51 82.4
Carub.0006s1240 Capsella rubella HOM05D001993 ORTHO05D004040 7.0e-17 90.1 55 72.7
SEGI_15241 Sequoiadendron giganteum HOM05D001993 ORTHO05D004040 1.2e-16 89.4 56 71.4
vmacro18809 Vaccinium macrocarpon HOM05D001993 ORTHO05D017206 1.2e-16 89.4 56 75.0
Hund00508 Selenicereus undatus HOM05D001993 ORTHO05D004040 1.6e-16 89.0 56 73.2
EL10Ac9g21856 Beta vulgaris HOM05D001993 ORTHO05D004040 2.7e-16 88.2 53 75.5
CBR_g24441 Chara braunii HOM05D001993 ORTHO05D004040 3.5e-16 87.8 56 71.4
Cre07.g325400 Chlamydomonas reinhardtii HOM05D001993 ORTHO05D004040 5.9e-16 87.0 56 66.1
CBR_g7976 Chara braunii HOM05D001993 ORTHO05D004040 7.7e-16 86.7 56 71.4
Mapoly0001s0386 Marchantia polymorpha HOM05D001993 ORTHO05D004040 1.7e-15 85.5 56 71.4
Ah.01g004830 Amaranthus hybridus HOM05D001993 ORTHO05D004040 2.2e-15 85.1 53 71.7
CDE02G2027 Ceratophyllum demersum HOM05D001993 ORTHO05D004040 2.2e-15 85.1 56 66.1
FAN19G2383 Fragaria x ananassa HOM05D001993 ORTHO05D017206 6.5e-15 83.6 38 100.0
Pp3c22_9260 Physcomitrium patens HOM05D001993 ORTHO05D004040 8.5e-15 83.2 56 71.4
MCO12G388 Micromonas commoda HOM05D001993 ORTHO05D004040 1.5e-14 82.4 56 66.1
Sp5g29930 Schrenkiella parvula HOM05D001993 ORTHO05D004040 3.2e-14 81.3 56 64.3
BolC2t09729H Brassica oleracea HOM05D001993 ORTHO05D004040 3.6e-13 77.8 56 58.9
AagrBONN_evm.TU.Sc2ySwM_228.2916 Anthoceros agrestis HOM05D001993 ORTHO05D004040 4.7e-13 77.4 56 62.5
BcaC03g15957 Brassica carinata HOM05D001993 ORTHO05D004040 1.0e-12 76.3 56 57.1
A02p23480 Brassica napus HOM05D001993 ORTHO05D004040 1.0e-12 76.3 56 57.1
C02p37180 Brassica napus HOM05D001993 ORTHO05D004040 1.0e-12 76.3 56 57.1
BraA02t07340Z Brassica rapa HOM05D001993 ORTHO05D004040 1.0e-12 76.3 56 57.1
BcaB05g25259 Brassica carinata HOM05D001993 ORTHO05D004040 1.4e-12 75.9 56 58.9
Sp5g35230 Schrenkiella parvula HOM05D001993 ORTHO05D004040 1.4e-12 75.9 56 58.9
Carub.0002s2700 Capsella rubella HOM05D001993 ORTHO05D004040 1.8e-12 75.5 56 60.7
A02p23460 Brassica napus HOM05D001993 ORTHO05D004040 2.3e-12 75.1 56 57.1
BolC2t09728H Brassica oleracea HOM05D001993 ORTHO05D004040 2.3e-12 75.1 56 57.1
BraA02t07338Z Brassica rapa HOM05D001993 ORTHO05D004040 2.3e-12 75.1 56 57.1
Actinidia03218 Actinidia chinensis HOM05D001993 ORTHO05D017206 3.0e-12 74.7 42 83.3
AL2G40910 Arabidopsis lyrata HOM05D001993 ORTHO05D004040 3.0e-12 74.7 56 57.1
C02p37160 Brassica napus HOM05D001993 ORTHO05D004040 4.0e-12 74.3 55 58.2
CARHR074080 Cardamine hirsuta HOM05D001993 ORTHO05D004040 5.2e-12 73.9 56 57.1
PRCOL_00006259 Prasinoderma coloniale HOM05D001993 ORTHO05D004040 5.2e-12 73.9 56 55.4
BcaC03g15954 Brassica carinata HOM05D001993 ORTHO05D004040 8.8e-12 73.2 56 55.4
vmacro16999 Vaccinium macrocarpon HOM05D001993 ORTHO05D004040 1.2e-11 72.8 43 79.1
CARHR205690 Cardamine hirsuta HOM05D001993 ORTHO05D004040 1.5e-11 72.4 56 53.6
BcaB04g21073 Brassica carinata HOM05D001993 ORTHO05D017206 2.2e-10 68.6 53 66.0
arahy.Tifrunner.gnm1.ann1.9XJ6IP Arachis hypogaea HOM05D001993 ORTHO05D004040 6.3e-10 67.0 56 58.9
vmacro17003 Vaccinium macrocarpon HOM05D001993 ORTHO05D004040 1.8e-09 65.5 54 61.1
vmacro04706 Vaccinium macrocarpon HOM05D002287 ORTHO05D427041 2.7e-08 61.6 49 59.2
Aqoxy4G01690 Aquilegia oxysepala HOM05D000462 ORTHO05D000006 5.0e-07 57.4 32 78.1
Ca_01036_v3 Cicer arietinum L. HOM05D001993 ORTHO05D014738 5.0e-07 57.4 33 87.9
Aqoxy4G00566 Aquilegia oxysepala HOM05D001993 ORTHO05D017206 2.5e-06 55.1 30 76.7
HanXRQChr05g0163631 Helianthus annuus HOM05D001993 ORTHO05D224004 9.5e-06 53.1 32 81.2


User provided reference genes

Program Settings