Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g23540 Fragaria vesca HOM05D004852 ORTHO05D025440 4.3e-37 157.9 106 100.0
FAN19G1538 Fragaria x ananassa HOM05D038560 ORTHO05D025440 2.0e-31 139.0 95 100.0
FvH4_2g04972 Fragaria vesca HOM05D004852 ORTHO05D006128 9.8e-26 120.2 106 71.7
RcHm_v2.0_Chr6g0254741 Rosa chinensis HOM05D004852 ORTHO05D006128 1.3e-25 119.8 110 65.5
FAN15G1156 Fragaria x ananassa HOM05D004852 ORTHO05D006128 3.9e-22 108.2 61 91.8
Duzib205G0175 Durio zibethinus HOM05D004852 ORTHO05D006128 9.8e-18 93.6 65 76.9
Manes.07G069666 Manihot esculenta HOM05D004852 ORTHO05D006128 1.3e-17 93.2 66 77.3
Prupe.8G136700 Prunus persica HOM05D004852 ORTHO05D006128 2.2e-17 92.4 114 60.5
Thecc.02G110100 Theobroma cacao HOM05D004852 ORTHO05D006128 2.9e-17 92.0 65 80.0
GSVIVG01037905001 Vitis vinifera HOM05D004852 ORTHO05D006128 6.4e-17 90.9 65 75.4
Gohir.A13G044100 Gossypium hirsutum HOM05D004852 ORTHO05D006128 1.9e-16 89.4 65 75.4
TWI79G0830 Tripterygium wilfordii HOM05D004852 ORTHO05D006128 2.4e-16 89.0 122 57.4
Atru.chr5.2475 Acer truncatum HOM05D004852 ORTHO05D006128 5.4e-16 87.8 115 54.8
Eucgr.I01096 Eucalyptus grandis HOM05D004852 ORTHO05D006128 5.4e-16 87.8 66 74.2
Gohir.D13G043200 Gossypium hirsutum HOM05D004852 ORTHO05D006128 7.1e-16 87.4 99 57.6
Gorai.013G047900 Gossypium raimondii HOM05D004852 ORTHO05D006128 7.1e-16 87.4 99 57.6
TAR376G0480 Trochodendron aralioides HOM05D004852 ORTHO05D006128 9.2e-16 87.0 62 72.6
CANSAT25G3392 Cannabis sativa HOM05D004852 ORTHO05D006128 1.2e-15 86.7 66 71.2
COL.COLO4_32578 Corchorus olitorius HOM05D004852 ORTHO05D006128 1.2e-15 86.7 108 54.6
THA.LOC104812918 Tarenaya hassleriana HOM05D004852 ORTHO05D006128 1.2e-15 86.7 66 71.2
Ciclev10027730m.g Citrus clementina HOM05D004852 ORTHO05D006128 1.6e-15 86.3 64 71.9
Nn1g04670 Nelumbo nucifera HOM05D004852 ORTHO05D006128 2.7e-15 85.5 64 71.9
QL11p033063 Quercus lobata HOM05D004852 ORTHO05D006128 4.6e-15 84.7 65 72.3
MD10G1098400 Malus domestica HOM05D004852 ORTHO05D006128 6.0e-15 84.3 66 68.2
AL8G14780 Arabidopsis lyrata HOM05D004852 ORTHO05D006128 1.0e-14 83.6 65 69.2
Thhalv10000766m.g Eutrema salsugineum HOM05D004852 ORTHO05D006128 1.0e-14 83.6 66 68.2
Potri.009G094400 Populus trichocarpa HOM05D004852 ORTHO05D006128 1.0e-14 83.6 66 66.7
Dinv42201 Davidia involucrata HOM05D004852 ORTHO05D006128 1.7e-14 82.8 113 58.4
AT5G44750 Arabidopsis thaliana HOM05D004852 ORTHO05D006128 2.3e-14 82.4 65 67.7
QL11p006401 Quercus lobata HOM05D003203 ORTHO05D003526 2.3e-14 82.4 66 68.2
Sp2g09590 Schrenkiella parvula HOM05D004852 ORTHO05D006128 2.3e-14 82.4 66 68.2
Cpa.g.sc106.106 Carica papaya HOM05D004852 ORTHO05D006128 3.9e-14 81.6 115 49.6
Sc18g0005570 Simmondsia chinensis HOM05D004852 ORTHO05D006128 3.9e-14 81.6 100 51.0
Carub.0008s0351 Capsella rubella HOM05D004852 ORTHO05D006128 5.1e-14 81.3 65 66.2
PGR142G1976 Punica granatum HOM05D004852 ORTHO05D006128 5.1e-14 81.3 65 67.7
Sabra09G0072700 Salix brachista HOM05D004852 ORTHO05D006128 1.5e-13 79.7 66 63.6
AUR62039064 Chenopodium quinoa HOM05D004852 ORTHO05D006128 1.9e-13 79.3 66 63.6
Aa31LG9G8420 Aethionema arabicum HOM05D004852 ORTHO05D006128 2.5e-13 79.0 104 49.0
arahy.Tifrunner.gnm1.ann1.F6JX6R Arachis hypogaea HOM05D004852 ORTHO05D006128 2.5e-13 79.0 62 67.7
BolC7t43304H Brassica oleracea HOM05D004852 ORTHO05D006128 2.5e-13 79.0 58 72.4
CiPaw.05G012900 Carya illinoinensis HOM05D004852 ORTHO05D006128 2.5e-13 79.0 118 46.6
Hma1.2p1_2341F.1_g320320 Hydrangea macrophylla HOM05D004852 ORTHO05D006128 2.5e-13 79.0 63 68.3
Hma1.2p1_2341F.1_g320330 Hydrangea macrophylla HOM05D004852 ORTHO05D006128 2.5e-13 79.0 63 68.3
PSO541G3304 Papaver somniferum HOM05D004852 ORTHO05D006128 2.5e-13 79.0 69 62.3
EL10Ac9g22261 Beta vulgaris HOM05D004852 ORTHO05D006128 4.3e-13 78.2 66 62.1
BcaNung07102 Brassica carinata HOM05D004852 ORTHO05D006128 4.3e-13 78.2 63 69.8
A06p46930 Brassica napus HOM05D004852 ORTHO05D006128 4.3e-13 78.2 60 68.3
BraA06t27566Z Brassica rapa HOM05D004852 ORTHO05D006128 4.3e-13 78.2 60 68.3
Aqoxy6G02842 Aquilegia oxysepala HOM05D004852 ORTHO05D006128 5.6e-13 77.8 73 61.6
SGA_v2.0_scaffold106G30732 Striga asiatica HOM05D004852 ORTHO05D006128 5.6e-13 77.8 65 67.7
BcaNung06822 Brassica carinata HOM05D004852 ORTHO05D006128 1.2e-12 76.6 58 70.7
C07p27720 Brassica napus HOM05D004852 ORTHO05D006128 1.2e-12 76.6 58 70.7
CSS0042044 Camellia sinensis var. sinensis HOM05D004852 ORTHO05D006128 1.2e-12 76.6 124 57.3
Lj5A215G62 Lonicera japonica HOM05D004852 ORTHO05D006128 1.2e-12 76.6 111 47.7
Ca_24346_v3 Cicer arietinum L. HOM05D004852 ORTHO05D006128 1.6e-12 76.3 65 64.6
CsaV3_7G008100 Cucumis sativus L. HOM05D004852 ORTHO05D006128 1.6e-12 76.3 65 61.5
Lsat_1_v5_gn_7_85781 Lactuca sativa HOM05D004852 ORTHO05D006128 1.6e-12 76.3 65 66.2
arahy.Tifrunner.gnm1.ann1.9X93LG Arachis hypogaea HOM05D004852 ORTHO05D006128 2.1e-12 75.9 62 64.5
MELO3C005497.2 Cucumis melo HOM05D004852 ORTHO05D006128 2.1e-12 75.9 65 61.5
Cc02_g19340 Coffea canephora HOM05D004852 ORTHO05D006128 3.6e-12 75.1 69 63.8
HanXRQChr17g0570571 Helianthus annuus HOM05D004852 ORTHO05D006128 3.6e-12 75.1 120 59.2
MBI16_g23720_MAGBIO Magnolia biondii HOM05D004852 ORTHO05D006128 4.7e-12 74.7 65 61.5
Sed0001586 Sechium edule HOM05D004852 ORTHO05D006128 1.1e-11 73.6 110 43.6
unitig_26.g10234 Utricularia gibba HOM05D004852 ORTHO05D006128 1.1e-11 73.6 65 61.5
SalBow3G4263 Salvia bowleyana HOM05D004852 ORTHO05D006128 1.4e-11 73.2 63 63.5
Migut.N01158 Erythranthe guttata HOM05D004852 ORTHO05D006128 1.8e-11 72.8 65 61.5
Migut.O00601 Erythranthe guttata HOM05D004852 ORTHO05D006128 1.8e-11 72.8 65 61.5
Nitab4.5_0001143g0010 Nicotiana tabacum HOM05D004852 ORTHO05D006128 4.0e-11 71.6 65 60.0
Sopen01g049730 Solanum pennellii HOM05D004852 ORTHO05D006128 4.0e-11 71.6 65 58.5
Glyma.01G243900 Glycine max HOM05D004852 ORTHO05D006128 6.8e-11 70.9 65 58.5
Psat4g228520 Pisum sativum HOM05D004852 ORTHO05D006128 8.9e-11 70.5 66 60.6
DCAR_029088 Daucus carota HOM05D004852 ORTHO05D006128 2.0e-10 69.3 64 59.4
Rhsim05G0088900 Rhododendron simsii HOM05D004852 ORTHO05D006128 2.0e-10 69.3 122 57.4
Medtr5g004960 Medicago truncatula HOM05D004852 ORTHO05D006128 2.6e-10 68.9 57 64.9
Nitab4.5_0004326g0020 Nicotiana tabacum HOM05D004852 ORTHO05D006128 2.6e-10 68.9 65 58.5
Phvul.002G053200 Phaseolus vulgaris HOM05D004852 ORTHO05D006128 7.6e-10 67.4 59 69.5
Hund06310 Selenicereus undatus HOM05D004852 ORTHO05D006128 1.3e-09 66.6 60 60.0
TPR.G21613 Trifolium pratense HOM05D004852 ORTHO05D006128 1.3e-09 66.6 62 59.7
ECA236G4936 Erigeron canadensis HOM05D004852 ORTHO05D006128 1.7e-09 66.2 61 62.3
Zm00001eb226110 Zea mays HOM05D004852 ORTHO05D006128 2.2e-09 65.9 58 58.6
Os06g0691000 Oryza sativa ssp. japonica HOM05D004852 ORTHO05D006128 3.8e-09 65.1 59 61.0
HPP92_016994 Vanilla planifolia HOM05D004852 ORTHO05D006128 3.8e-09 65.1 70 48.6
HPP92_017010 Vanilla planifolia HOM05D004852 ORTHO05D006128 3.8e-09 65.1 70 48.6
Actinidia05501 Actinidia chinensis HOM05D004852 ORTHO05D006128 4.9e-09 64.7 114 49.1
ATR0205G027 Amborella trichopoda HOM05D004852 ORTHO05D006128 8.4e-09 63.9 69 50.7
vmacro19454 Vaccinium macrocarpon HOM05D004852 ORTHO05D006128 3.2e-08 62.0 122 43.4
Oeu044275.2 Olea europaea HOM05D004852 ORTHO05D006128 7.1e-08 60.8 48 68.8
Lalb_Chr09g0319581 Lupinus albus HOM05D004852 ORTHO05D006128 9.2e-08 60.5 54 63.0
QL11p006896 Quercus lobata HOM05D003203 ORTHO05D003526 9.2e-08 60.5 47 70.2
QL11p006907 Quercus lobata HOM05D003203 ORTHO05D003526 1.2e-07 60.1 47 70.2
Rhsim05G0100000 Rhododendron simsii HOM05D004852 ORTHO05D006128 4.6e-07 58.2 104 46.2
VMungo0251G0861 Vigna mungo HOM05D000344 ORTHO05D026217 6.0e-07 57.8 49 69.4
MD05G1091100 Malus domestica HOM05D004852 ORTHO05D006128 1.3e-06 56.6 47 63.8
SEGI_21122 Sequoiadendron giganteum HOM05D004852 ORTHO05D006128 1.7e-06 56.2 78 43.6
AUR62010324 Chenopodium quinoa HOM05D004852 ORTHO05D006128 5.1e-06 54.7 47 61.7
Rhsim05G0088800 Rhododendron simsii HOM05D004852 ORTHO05D006128 5.1e-06 54.7 50 60.0


User provided reference genes

Program Settings