Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g14810 Fragaria vesca HOM05D005480 ORTHO05D006735 4.8e-222 774.6 534 100.0
FAN19G1500 Fragaria x ananassa HOM05D005480 ORTHO05D006735 2.7e-217 758.8 534 94.4
FAN26G2127 Fragaria x ananassa HOM05D005480 ORTHO05D006735 1.7e-203 713.0 535 88.2
FAN23G2977 Fragaria x ananassa HOM05D005480 ORTHO05D006735 4.3e-202 708.4 537 89.4
FAN28G0426 Fragaria x ananassa HOM05D005480 ORTHO05D006735 7.0e-197 691.0 534 88.2
RcHm_v2.0_Chr2g0103771 Rosa chinensis HOM05D005480 ORTHO05D006735 2.3e-179 632.9 546 78.9
Prupe.7G142300 Prunus persica HOM05D005480 ORTHO05D006735 3.2e-149 532.7 435 69.4
QL06p043724 Quercus lobata HOM05D005480 ORTHO05D006735 3.7e-145 519.2 436 67.4
MD02G1161300 Malus domestica HOM05D005480 ORTHO05D006735 1.1e-144 517.7 429 67.6
CiPaw.01G026500 Carya illinoinensis HOM05D005480 ORTHO05D006735 2.4e-144 516.5 435 66.4
MD15G1275400 Malus domestica HOM05D005480 ORTHO05D006735 3.2e-141 506.1 535 67.9
Glyma.01G181500 Glycine max HOM05D005480 ORTHO05D006735 7.1e-141 505.0 423 66.9
Eucgr.H01972 Eucalyptus grandis HOM05D005480 ORTHO05D006735 2.7e-140 503.1 438 67.1
Gohir.A12G068600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 6.0e-140 501.9 426 71.1
CsaV3_6G042900 Cucumis sativus L. HOM05D005480 ORTHO05D006735 2.5e-138 496.5 429 63.9
Thecc.01G048100 Theobroma cacao HOM05D005480 ORTHO05D006735 2.5e-138 496.5 425 68.5
MELO3C007529.2 Cucumis melo HOM05D005480 ORTHO05D006735 4.3e-138 495.7 428 64.0
Sed0026694 Sechium edule HOM05D005480 ORTHO05D006735 5.7e-138 495.4 428 65.0
Duzib187G0998 Durio zibethinus HOM05D005480 ORTHO05D006735 6.9e-136 488.4 432 69.0
Lj7A20T61 Lonicera japonica HOM05D005480 ORTHO05D006735 2.6e-135 486.5 422 69.2
Glyma.11G059700 Glycine max HOM05D005480 ORTHO05D006735 7.7e-135 485.0 306 81.4
TPR.G11349 Trifolium pratense HOM05D005480 ORTHO05D006735 1.0e-134 484.6 437 65.2
VMungo1215G2543 Vigna mungo HOM05D005480 ORTHO05D006735 1.3e-134 484.2 435 65.3
CSS0014684 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 1.7e-134 483.8 427 67.2
TAR381G0420 Trochodendron aralioides HOM05D005480 ORTHO05D006735 1.7e-134 483.8 366 71.9
Gohir.D12G090600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 3.8e-134 482.6 426 66.4
Hma1.2p1_0546F.1_g176180 Hydrangea macrophylla HOM05D005480 ORTHO05D006735 5.0e-134 482.3 431 69.8
CANSAT01G1679 Cannabis sativa HOM05D005480 ORTHO05D006735 8.5e-134 481.5 435 68.3
Dinv39906 Davidia involucrata HOM05D005480 ORTHO05D006735 8.5e-134 481.5 430 63.5
Gorai.008G072400 Gossypium raimondii HOM05D005480 ORTHO05D006735 1.4e-133 480.7 426 69.0
Duzib147G0741 Durio zibethinus HOM05D005480 ORTHO05D006735 2.5e-133 479.9 424 67.5
Dinv26753 Davidia involucrata HOM05D005480 ORTHO05D006735 2.7e-132 476.5 306 80.7
Lj7A18T44 Lonicera japonica HOM05D005480 ORTHO05D006735 3.6e-132 476.1 431 67.1
Potri.007G036600 Populus trichocarpa HOM05D005480 ORTHO05D006735 6.1e-132 475.3 428 65.4
Medtr5g018390 Medicago truncatula HOM05D005480 ORTHO05D006735 1.8e-131 473.8 432 65.7
Lj2g0021055 Lotus japonicus HOM05D005480 ORTHO05D006735 6.7e-131 471.9 438 68.3
PGR102G0042 Punica granatum HOM05D005480 ORTHO05D006735 1.1e-130 471.1 440 63.0
ClCG01G016580 Citrullus lanatus HOM05D005480 ORTHO05D006735 5.7e-130 468.8 476 57.6
Phvul.002G022500 Phaseolus vulgaris HOM05D005480 ORTHO05D006735 9.7e-130 468.0 406 66.7
TAR625G1062 Trochodendron aralioides HOM05D005480 ORTHO05D006735 1.7e-129 467.2 424 65.1
Solyc02g090230.4 Solanum lycopersicum HOM05D005480 ORTHO05D006735 2.2e-129 466.8 429 65.7
CSS0005424 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 1.4e-128 464.2 427 65.6
Sopen02g034920 Solanum pennellii HOM05D005480 ORTHO05D006735 2.4e-128 463.4 429 65.5
Rhsim02G0168000 Rhododendron simsii HOM05D005480 ORTHO05D006735 2.6e-127 459.9 375 71.5
Lalb_Chr09g0322931 Lupinus albus HOM05D005480 ORTHO05D006735 4.5e-127 459.1 303 78.9
PGSC0003DMG400010074 Solanum tuberosum HOM05D005480 ORTHO05D006735 5.9e-127 458.8 429 64.3
MSTRG.23794 Avicennia marina HOM05D005480 ORTHO05D006735 1.0e-126 458.0 430 67.0
Actinidia12077 Actinidia chinensis HOM05D005480 ORTHO05D006735 1.3e-126 457.6 306 76.8
Manes.13G130100 Manihot esculenta HOM05D005480 ORTHO05D006735 6.5e-126 455.3 435 67.1
Psat2g164160 Pisum sativum HOM05D005480 ORTHO05D006735 3.2e-125 453.0 424 66.3
DCAR_021432 Daucus carota HOM05D005480 ORTHO05D006735 4.2e-125 452.6 419 64.7
Nn6g32121 Nelumbo nucifera HOM05D005480 ORTHO05D006735 2.1e-124 450.3 431 64.3
Sc03g0001260 Simmondsia chinensis HOM05D005480 ORTHO05D006735 3.6e-124 449.5 418 64.1
Cfa004218 Carpinus fangiana HOM05D005480 ORTHO05D006735 1.0e-123 448.0 395 66.8
Ciclev10025487m.g Citrus clementina HOM05D005480 ORTHO05D006735 1.0e-123 448.0 447 60.6
arahy.Tifrunner.gnm1.ann1.E9URZA Arachis hypogaea HOM05D005480 ORTHO05D006735 3.3e-122 443.0 314 75.2
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 2.2e-121 440.3 419 63.0
THA.LOC104819823 Tarenaya hassleriana HOM05D005480 ORTHO05D006735 7.0e-120 435.3 310 73.2
MBI16_g19897_MAGBIO Magnolia biondii HOM05D005480 ORTHO05D006735 4.5e-119 432.6 408 60.8
Cc07_g05560 Coffea canephora HOM05D005480 ORTHO05D006735 8.5e-118 428.3 429 59.0
Aqoxy5G01417 Aquilegia oxysepala HOM05D005480 ORTHO05D006735 1.4e-117 427.6 431 58.7
COL.COLO4_11327 Corchorus olitorius HOM05D005480 ORTHO05D006735 2.1e-116 423.7 276 80.4
Hund13586 Selenicereus undatus HOM05D005480 ORTHO05D006735 3.6e-116 422.9 303 71.0
Migut.H00485 Erythranthe guttata HOM05D005480 ORTHO05D006735 6.1e-116 422.2 460 62.6
HanXRQChr04g0123741 Helianthus annuus HOM05D005480 ORTHO05D006735 1.1e-114 417.9 439 61.7
ECA232G3160 Erigeron canadensis HOM05D005480 ORTHO05D006735 4.4e-114 416.0 453 54.7
SGA_v2.0_scaffold15G07231 Striga asiatica HOM05D005480 ORTHO05D006735 1.3e-113 414.5 308 69.5
Thhalv10025060m.g Eutrema salsugineum HOM05D005480 ORTHO05D006735 2.2e-113 413.7 555 58.7
PSO170G5089 Papaver somniferum HOM05D005480 ORTHO05D006735 2.2e-113 413.7 310 68.1
vmacro05295 Vaccinium macrocarpon HOM05D005480 ORTHO05D006735 4.8e-113 412.5 276 76.4
PSO210G7251 Papaver somniferum HOM05D005480 ORTHO05D006735 6.3e-113 412.1 310 68.1
Peaxi162Scf00993g00022 Petunia axillaris HOM05D005480 ORTHO05D006735 6.3e-113 412.1 400 66.2
Sp7g34650 Schrenkiella parvula HOM05D005480 ORTHO05D006735 2.6e-111 406.8 444 60.8
Sabra07G0032600 Salix brachista HOM05D005480 ORTHO05D006735 1.9e-109 400.6 276 77.9
Lsat_1_v5_gn_4_179460 Lactuca sativa HOM05D005480 ORTHO05D006735 1.6e-108 397.5 409 61.9
Carub.0007s0332 Capsella rubella HOM05D005480 ORTHO05D006735 4.7e-108 396.0 550 54.5
Nitab4.5_0000108g0300 Nicotiana tabacum HOM05D005480 ORTHO05D006735 4.7e-108 396.0 389 68.4
Nitab4.5_0001014g0070 Nicotiana tabacum HOM05D005480 ORTHO05D006735 4.7e-108 396.0 387 68.2
Aa31LG6G13860 Aethionema arabicum HOM05D005480 ORTHO05D006735 6.1e-108 395.6 307 67.8
CDE01G0732 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 8.0e-108 395.2 428 57.0
AT4G37130 Arabidopsis thaliana HOM05D005480 ORTHO05D006735 1.0e-107 394.8 433 61.2
AL7G13910 Arabidopsis lyrata HOM05D005480 ORTHO05D006735 2.3e-107 393.7 433 61.2
CARHR245380 Cardamine hirsuta HOM05D005480 ORTHO05D006735 2.3e-107 393.7 312 67.9
ATR0733G143 Amborella trichopoda HOM05D005480 ORTHO05D006735 3.0e-107 393.3 305 65.6
CAN.G836.34 Capsicum annuum HOM05D005480 ORTHO05D006735 5.2e-107 392.5 383 67.1
BraA01t00184Z Brassica rapa HOM05D005480 ORTHO05D006735 6.7e-107 392.1 434 57.4
CDE02G2721 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 3.3e-106 389.8 289 68.5
A01p01950 Brassica napus HOM05D005480 ORTHO05D006735 5.7e-106 389.0 434 57.8
C01p02120 Brassica napus HOM05D005480 ORTHO05D006735 6.3e-105 385.6 316 66.5
BolC1t00204H Brassica oleracea HOM05D005480 ORTHO05D006735 1.4e-104 384.4 316 66.5
BcaNung03510 Brassica carinata HOM05D005480 ORTHO05D006735 7.0e-104 382.1 430 59.1
BolC3t20222H Brassica oleracea HOM05D005480 ORTHO05D006735 5.9e-103 379.0 321 64.8
unitig_899.g14972 Utricularia gibba HOM05D005480 ORTHO05D006735 7.7e-103 378.6 340 57.9
Oeu003952.2 Olea europaea HOM05D005480 ORTHO05D006735 2.9e-102 376.7 592 42.9
Haze_15193 Corylus avellana HOM05D005480 ORTHO05D006735 3.2e-101 373.2 358 65.1
AUR62003828 Chenopodium quinoa HOM05D005480 ORTHO05D006735 3.6e-100 369.8 391 64.2
SHI08751 Sapria himalayana HOM05D005480 ORTHO05D006735 1.0e-99 368.2 315 64.4
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 4.0e-99 366.3 275 70.2
BcaC01g00434 Brassica carinata HOM05D005480 ORTHO05D006735 4.4e-98 362.8 327 61.5
C03p79710 Brassica napus HOM05D005480 ORTHO05D006735 4.4e-98 362.8 327 61.5
GSVIVG01005079001 Vitis vinifera HOM05D005480 ORTHO05D006735 2.8e-97 360.1 229 77.3
BcaB03g12366 Brassica carinata HOM05D005480 ORTHO05D006735 6.3e-97 359.0 440 52.3
Ca_24802_v3 Cicer arietinum L. HOM05D005480 ORTHO05D006735 1.8e-96 357.5 360 62.8
A08p22500 Brassica napus HOM05D005480 ORTHO05D006735 1.9e-93 347.4 430 49.5
Os09g0453500 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 2.5e-93 347.1 310 58.4
BraA08t34205Z Brassica rapa HOM05D005480 ORTHO05D006735 5.5e-93 345.9 427 48.7
Lalb_Chr05g0213141 Lupinus albus HOM05D005480 ORTHO05D006735 8.9e-91 338.6 251 71.3
AUR62001975 Chenopodium quinoa HOM05D005480 ORTHO05D006735 2.3e-86 323.9 362 58.0
Zm00001eb314700 Zea mays HOM05D005480 ORTHO05D006735 8.6e-86 322.0 428 54.2
arahy.Tifrunner.gnm1.ann1.HXIH5S Arachis hypogaea HOM05D005480 ORTHO05D006735 1.1e-85 321.6 374 57.0
Zm00001eb100530 Zea mays HOM05D005480 ORTHO05D006735 1.2e-84 318.2 300 55.0
BcaB03g12364 Brassica carinata HOM05D005480 ORTHO05D006735 8.9e-83 312.0 275 62.2
AagrBONN_evm.TU.Sc2ySwM_117.4106 Anthoceros agrestis HOM05D005480 ORTHO05D006735 4.7e-76 289.7 316 51.3
Mapoly0027s0041 Marchantia polymorpha HOM05D005480 ORTHO05D006735 7.3e-69 265.8 311 46.9
Pp3c24_6760 Physcomitrium patens HOM05D005480 ORTHO05D006735 4.1e-64 250.0 301 47.2
Ah.03g144040 Amaranthus hybridus HOM05D005480 ORTHO05D006735 9.2e-64 248.8 229 58.5
HPP92_016040 Vanilla planifolia HOM05D005480 ORTHO05D006735 1.0e-62 245.4 202 58.9
SEGI_40098 Sequoiadendron giganteum HOM05D005480 ORTHO05D006735 5.1e-62 243.0 215 59.5
SGA_v2.0_scaffold135G34951 Striga asiatica HOM05D005480 ORTHO05D006735 2.1e-60 237.7 403 44.4
Os03g0765400 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 2.5e-53 214.2 268 45.5
CBR_g66690 Chara braunii HOM05D005480 ORTHO05D006735 6.2e-52 209.5 331 39.3
Mapoly0016s0112 Marchantia polymorpha HOM05D005480 ORTHO05D006735 2.9e-41 174.1 290 37.6
Psat5g148720 Pisum sativum HOM05D005480 ORTHO05D006735 2.4e-40 171.0 203 54.2
Cpa.g.c44085 Carica papaya HOM05D005480 ORTHO05D006735 1.5e-29 135.2 197 46.7
Sabra07G0033400 Salix brachista HOM05D005480 ORTHO05D006735 2.9e-25 120.9 160 48.8
Sabra07G0032900 Salix brachista HOM05D005480 ORTHO05D006735 1.4e-24 118.6 160 48.1
Sabra07G0033100 Salix brachista HOM05D005480 ORTHO05D006735 1.4e-24 118.6 160 48.1
HPP92_016039 Vanilla planifolia HOM05D005480 ORTHO05D006735 4.2e-24 117.1 71 80.3
Ah.03g144030 Amaranthus hybridus HOM05D005480 ORTHO05D006735 7.9e-15 86.3 84 54.8
Cre16.g685217 Chlamydomonas reinhardtii HOM05D005480 ORTHO05D006735 1.8e-14 85.1 256 25.8
PRCOL_00002206 Prasinoderma coloniale HOM05D005480 ORTHO05D006735 3.7e-12 77.4 301 26.2
BcaC02g10502 Brassica carinata HOM05D005480 ORTHO05D006735 6.9e-11 73.2 65 56.9
C04p28170 Brassica napus HOM05D005480 ORTHO05D006735 6.9e-11 73.2 98 45.9
BolC4t24360H Brassica oleracea HOM05D005480 ORTHO05D006735 6.9e-11 73.2 98 45.9
C04p33290 Brassica napus HOM05D005480 ORTHO05D006735 9.4e-08 62.8 112 40.2
CBR_g66696 Chara braunii HOM05D005480 ORTHO05D006735 3.6e-07 60.8 99 36.4
BolC4t24894H Brassica oleracea HOM05D005480 ORTHO05D006735 1.4e-06 58.9 99 42.4


User provided reference genes

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