Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g12760 Fragaria vesca HOM05D004674 ORTHO05D007261 0.0e+00 1223.4 633 100.0
FAN26G2871 Fragaria x ananassa HOM05D004674 ORTHO05D007261 0.0e+00 1194.9 656 95.3
FAN23G0750 Fragaria x ananassa HOM05D004674 ORTHO05D007261 0.0e+00 1172.1 666 93.4
FAN19G2260 Fragaria x ananassa HOM05D004674 ORTHO05D007261 0.0e+00 1146.3 656 92.7
RcHm_v2.0_Chr2g0100861 Rosa chinensis HOM05D004674 ORTHO05D007261 0.0e+00 1144.4 656 91.0
FAN28G0143 Fragaria x ananassa HOM05D004674 ORTHO05D007261 0.0e+00 1133.6 656 91.6
Prupe.7G158600 Prunus persica HOM05D004674 ORTHO05D007261 4.9e-306 1053.9 655 84.1
MD15G1256300 Malus domestica HOM05D004674 ORTHO05D007261 2.4e-300 1035.0 660 82.9
QL06p035418 Quercus lobata HOM05D004674 ORTHO05D007261 1.9e-281 972.2 655 77.9
CANSAT01G1299 Cannabis sativa HOM05D004674 ORTHO05D007261 4.2e-281 971.1 658 77.7
QL06p035429 Quercus lobata HOM05D004674 ORTHO05D007261 1.2e-280 969.5 655 77.7
COL.COLO4_22030 Corchorus olitorius HOM05D004674 ORTHO05D007261 1.6e-280 969.1 655 77.6
Gorai.007G201200 Gossypium raimondii HOM05D004674 ORTHO05D007261 2.7e-280 968.4 655 77.7
Haze_03856 Corylus avellana HOM05D004674 ORTHO05D007261 1.0e-279 966.5 657 76.7
Cfa006896 Carpinus fangiana HOM05D004674 ORTHO05D007261 1.3e-279 966.1 658 76.7
Gohir.A11G182300 Gossypium hirsutum HOM05D004674 ORTHO05D007261 3.9e-279 964.5 655 77.7
Duzib264G1222 Durio zibethinus HOM05D004674 ORTHO05D007261 2.1e-277 958.7 655 76.6
CiPaw.07G049300 Carya illinoinensis HOM05D004674 ORTHO05D007261 3.7e-277 958.0 655 77.7
Ciclev10024970m.g Citrus clementina HOM05D004674 ORTHO05D007261 8.1e-277 956.8 651 77.3
Gohir.D11G189100 Gossypium hirsutum HOM05D004674 ORTHO05D007261 8.1e-277 956.8 663 76.5
Atru.chr3.699 Acer truncatum HOM05D004674 ORTHO05D007261 4.0e-276 954.5 655 76.8
TAR376G0875 Trochodendron aralioides HOM05D004674 ORTHO05D007261 4.0e-276 954.5 655 76.0
Eucgr.I02404 Eucalyptus grandis HOM05D004674 ORTHO05D007261 2.0e-275 952.2 654 75.5
Sabra07G0018000 Salix brachista HOM05D004674 ORTHO05D007261 2.0e-275 952.2 654 76.1
Cpa.g.sc6.166 Carica papaya HOM05D004674 ORTHO05D007261 2.9e-274 948.3 657 75.8
CSS0017426 Camellia sinensis var. sinensis HOM05D004674 ORTHO05D007261 4.2e-273 944.5 641 76.3
Potri.007G021000 Populus trichocarpa HOM05D004674 ORTHO05D007261 2.1e-272 942.2 653 75.8
Glyma.02G053800 Glycine max HOM05D004674 ORTHO05D007261 7.9e-272 940.3 658 75.2
GSVIVG01018892001 Vitis vinifera HOM05D004674 ORTHO05D007261 1.8e-271 939.1 654 75.2
Ca_22335_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 3.9e-271 937.9 658 74.9
Medtr8g076950 Medicago truncatula HOM05D004674 ORTHO05D007261 3.9e-271 937.9 658 74.5
VMungo0251G2099 Vigna mungo HOM05D004674 ORTHO05D007261 7.4e-270 933.7 658 74.9
Nn5g29687 Nelumbo nucifera HOM05D004674 ORTHO05D007261 2.8e-269 931.8 658 74.2
Migut.H02523 Erythranthe guttata HOM05D004674 ORTHO05D007261 1.4e-268 929.5 657 74.4
arahy.Tifrunner.gnm1.ann1.LKR1Y0 Arachis hypogaea HOM05D004674 ORTHO05D007261 1.8e-268 929.1 659 74.8
Sed0001139 Sechium edule HOM05D004674 ORTHO05D007261 4.1e-268 927.9 655 73.9
TPR.G21548 Trifolium pratense HOM05D004674 ORTHO05D007261 4.1e-268 927.9 658 74.2
Lj4g0022194 Lotus japonicus HOM05D004674 ORTHO05D007261 2.0e-267 925.6 656 74.4
Cc07_g09910 Coffea canephora HOM05D004674 ORTHO05D007261 3.4e-267 924.9 651 73.7
Lalb_Chr16g0391041 Lupinus albus HOM05D004674 ORTHO05D007261 3.4e-267 924.9 660 74.5
AL8G45110 Arabidopsis lyrata HOM05D004674 ORTHO05D007261 5.8e-267 924.1 657 74.7
CARHR034750 Cardamine hirsuta HOM05D004674 ORTHO05D007261 7.6e-267 923.7 645 75.7
AT5G66420 Arabidopsis thaliana HOM05D004674 ORTHO05D007261 5.0e-266 921.0 656 74.4
THA.LOC104821303 Tarenaya hassleriana HOM05D004674 ORTHO05D007261 5.0e-266 921.0 657 73.7
CsaV3_6G046560 Cucumis sativus L. HOM05D004674 ORTHO05D007261 8.4e-266 920.2 654 73.5
Carub.0008s2809 Capsella rubella HOM05D004674 ORTHO05D007261 1.1e-265 919.8 656 74.4
Oeu019445.1 Olea europaea HOM05D004674 ORTHO05D007261 1.1e-265 919.8 655 75.0
TWI09G0339 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 1.4e-265 919.5 655 74.5
ECA232G2544 Erigeron canadensis HOM05D004674 ORTHO05D000001 2.5e-265 918.7 645 74.1
Phvul.003G256400 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 5.5e-265 917.5 658 74.2
PGR119G1113 Punica granatum HOM05D004674 ORTHO05D007261 7.1e-265 917.1 653 74.3
HanXRQChr09g0261191 Helianthus annuus HOM05D004674 ORTHO05D007261 9.3e-265 916.8 651 73.4
arahy.Tifrunner.gnm1.ann1.SG067W Arachis hypogaea HOM05D004674 ORTHO05D007261 2.7e-264 915.2 688 71.9
Aqoxy5G01578 Aquilegia oxysepala HOM05D004674 ORTHO05D007261 6.1e-264 914.1 653 72.7
Rhsim08G0121400 Rhododendron simsii HOM05D004674 ORTHO05D007261 1.0e-263 913.3 698 70.2
BcaB02g10033 Brassica carinata HOM05D004674 ORTHO05D007261 1.8e-263 912.5 644 74.1
SalBow8G1271 Salvia bowleyana HOM05D004674 ORTHO05D007261 3.0e-263 911.8 653 73.8
SalBow8G5199 Salvia bowleyana HOM05D004674 ORTHO05D007261 2.5e-262 908.7 653 73.7
Lsat_1_v5_gn_4_148020 Lactuca sativa HOM05D004674 ORTHO05D007261 3.3e-262 908.3 652 72.2
A07p17540 Brassica napus HOM05D004674 ORTHO05D007261 4.3e-262 907.9 647 73.4
Sopen02g013570 Solanum pennellii HOM05D004674 ORTHO05D007261 5.7e-262 907.5 659 73.1
PGSC0003DMG400015491 Solanum tuberosum HOM05D004674 ORTHO05D007261 5.7e-262 907.5 659 73.0
C07p25500 Brassica napus HOM05D004674 ORTHO05D007261 9.7e-262 906.7 648 73.6
DCAR_017308 Daucus carota HOM05D004674 ORTHO05D007261 2.2e-261 905.6 657 73.1
Lj4A206G17 Lonicera japonica HOM05D004674 ORTHO05D007261 2.8e-261 905.2 643 75.9
Sc16g0002550 Simmondsia chinensis HOM05D004674 ORTHO05D007261 2.8e-261 905.2 646 73.7
ClCG01G019830 Citrullus lanatus HOM05D004674 ORTHO05D007261 3.7e-261 904.8 697 68.7
MSTRG.2485 Avicennia marina HOM05D004674 ORTHO05D007261 4.8e-261 904.4 652 73.3
BcaC06g34697 Brassica carinata HOM05D004674 ORTHO05D007261 8.2e-261 903.7 648 73.5
Thhalv10003695m.g Eutrema salsugineum HOM05D004674 ORTHO05D007261 1.1e-260 903.3 656 73.2
Nitab4.5_0001525g0030 Nicotiana tabacum HOM05D004674 ORTHO05D007261 1.1e-260 903.3 649 73.5
BraA07t29474Z Brassica rapa HOM05D004674 ORTHO05D007261 2.4e-260 902.1 647 73.0
Sp2g30300 Schrenkiella parvula HOM05D004674 ORTHO05D007261 2.4e-260 902.1 652 73.0
EL10As8g23909 Beta vulgaris HOM05D004674 ORTHO05D007261 3.1e-260 901.7 658 72.0
BolC7t43070H Brassica oleracea HOM05D004674 ORTHO05D007261 4.1e-260 901.4 649 73.3
Solyc02g062560.3 Solanum lycopersicum HOM05D004674 ORTHO05D007261 4.1e-260 901.4 657 73.1
CAN.G1019.6 Capsicum annuum HOM05D004674 ORTHO05D007261 3.4e-259 898.3 659 72.5
Peaxi162Scf00008g03325 Petunia axillaris HOM05D004674 ORTHO05D007261 4.5e-259 897.9 652 72.9
Hund16446 Selenicereus undatus HOM05D004674 ORTHO05D007261 2.5e-257 892.1 656 71.8
SGA_v2.0_scaffold12G06320 Striga asiatica HOM05D004674 ORTHO05D007261 1.2e-256 889.8 646 72.8
Nitab4.5_0000136g0250 Nicotiana tabacum HOM05D004674 ORTHO05D007261 2.7e-256 888.6 684 69.4
ATR0568G133 Amborella trichopoda HOM05D004674 ORTHO05D007261 1.4e-255 886.3 659 70.3
HPP92_004908 Vanilla planifolia HOM05D004674 ORTHO05D007261 7.4e-254 880.6 657 69.6
PSO170G5809 Papaver somniferum HOM05D004674 ORTHO05D007261 1.1e-252 876.7 654 69.7
Zm00001eb225760 Zea mays HOM05D004674 ORTHO05D007261 1.4e-252 876.3 648 70.8
unitig_60.g25534 Utricularia gibba HOM05D004674 ORTHO05D007261 2.4e-252 875.5 651 69.7
Os06g0472400 Oryza sativa ssp. japonica HOM05D004674 ORTHO05D007261 5.3e-252 874.4 655 70.4
AUR62004091 Chenopodium quinoa HOM05D004674 ORTHO05D007261 5.0e-250 867.8 678 67.4
Aa31LG1G14940 Aethionema arabicum HOM05D004674 ORTHO05D007261 4.4e-238 828.2 654 68.3
Manes.02G097100 Manihot esculenta HOM05D004674 ORTHO05D007261 5.0e-234 814.7 655 68.9
AUR62007603 Chenopodium quinoa HOM05D004674 ORTHO05D007261 5.7e-230 801.2 608 68.9
SEGI_40838 Sequoiadendron giganteum HOM05D004674 ORTHO05D007261 8.3e-229 797.3 741 59.2
Pp3c20_8030 Physcomitrium patens HOM05D004674 ORTHO05D007261 6.5e-226 787.7 643 63.8
Actinidia35628 Actinidia chinensis HOM05D004674 ORTHO05D007261 4.0e-223 778.5 534 75.5
SMO367G0601 Selaginella moellendorffii HOM05D004674 ORTHO05D007261 2.2e-221 772.7 654 63.5
Dinv40019 Davidia involucrata HOM05D004674 ORTHO05D007261 1.8e-212 743.0 498 76.7
TAR376G0765 Trochodendron aralioides HOM05D004674 ORTHO05D007261 2.9e-197 692.6 658 59.6
Thecc.01G030000 Theobroma cacao HOM05D004674 ORTHO05D007261 3.5e-179 632.5 463 73.2
TAR376G0038 Trochodendron aralioides HOM05D004674 ORTHO05D007261 3.1e-175 619.4 465 72.0
AagrBONN_evm.TU.Sc2ySwM_344.2833 Anthoceros agrestis HOM05D004674 ORTHO05D007261 6.9e-175 618.2 610 55.6
Psat4g095640 Pisum sativum HOM05D004674 ORTHO05D007261 1.5e-174 617.1 511 66.1
TAR376G0961 Trochodendron aralioides HOM05D004674 ORTHO05D007261 1.9e-161 573.5 462 68.6
MELO3C007854.2 Cucumis melo HOM05D004674 ORTHO05D007261 4.8e-152 542.3 576 54.9
COL.COLO4_22029 Corchorus olitorius HOM05D004674 ORTHO05D007261 7.2e-132 475.3 320 76.9
Atru.chr3.652 Acer truncatum HOM05D004674 ORTHO05D007261 2.4e-127 460.3 376 67.3
TWI09G0580 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 3.3e-121 439.9 323 71.5
Potri.005G120100 Populus trichocarpa HOM05D004674 ORTHO05D007261 1.7e-120 437.6 308 74.0
Gohir.A11G182500 Gossypium hirsutum HOM05D004674 ORTHO05D007261 4.0e-114 416.4 324 68.5
Gorai.007G201400 Gossypium raimondii HOM05D004674 ORTHO05D007261 1.5e-108 397.9 310 69.0
Gohir.D11G189150 Gossypium hirsutum HOM05D004674 ORTHO05D007261 6.1e-107 392.5 310 68.4
PSO407G0425 Papaver somniferum HOM05D004674 ORTHO05D007261 2.3e-106 390.6 309 62.1
PSO170G6195 Papaver somniferum HOM05D004674 ORTHO05D007261 3.0e-106 390.2 309 63.1
Actinidia19204 Actinidia chinensis HOM05D004674 ORTHO05D007261 4.4e-105 386.3 304 65.5
Glyma.16G133867 Glycine max HOM05D004674 ORTHO05D007261 1.3e-104 384.8 224 86.2
MELO3C010392.2 Cucumis melo HOM05D004674 ORTHO05D007261 9.2e-103 378.6 442 52.7
MD02G1142700 Malus domestica HOM05D004674 ORTHO05D007261 7.7e-102 375.6 257 77.8
Psat0s3062g0040 Pisum sativum HOM05D004674 ORTHO05D007261 3.7e-96 356.7 235 78.3
Zm00001eb124970 Zea mays HOM05D004674 ORTHO05D007261 7.6e-65 252.7 160 79.4
Zm00001eb098830 Zea mays HOM05D004674 ORTHO05D007261 4.9e-64 250.0 168 72.6
Duzib147G1548 Durio zibethinus HOM05D004674 ORTHO05D007261 1.6e-59 235.0 230 60.0
vmacro19462 Vaccinium macrocarpon HOM05D004674 ORTHO05D007261 1.5e-57 228.4 136 85.3
TAR376G0549 Trochodendron aralioides HOM05D004674 ORTHO05D007261 9.6e-52 209.1 128 80.5
Glyma.16G133933 Glycine max HOM05D004674 ORTHO05D007261 2.8e-51 207.6 156 67.9
Ca_06503_v3 Cicer arietinum L. HOM05D000059 ORTHO05D000128 6.2e-51 206.5 229 53.7
QL03p066021 Quercus lobata HOM05D004674 ORTHO05D029177 1.2e-49 202.2 162 65.4
Phvul.003G256200 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 1.0e-45 189.1 124 75.0
Psat4g095680 Pisum sativum HOM05D004674 ORTHO05D007261 1.9e-44 184.9 107 86.9
Atru.chr3.653 Acer truncatum HOM05D004674 ORTHO05D007261 4.8e-43 180.3 95 89.5
MD02G1142800 Malus domestica HOM05D004674 ORTHO05D020551 2.9e-40 171.0 135 71.9
Lj4C205T11 Lonicera japonica HOM05D004674 ORTHO05D007261 3.8e-40 170.6 277 43.3
Dinv40102 Davidia involucrata HOM05D004674 ORTHO05D020551 4.1e-34 150.6 128 62.5
MELO3C028475.2 Cucumis melo HOM05D004674 ORTHO05D029177 1.2e-30 139.0 93 74.2
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 3.9e-29 134.0 86 75.6
Ca_07052_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 3.4e-25 120.9 160 46.2
Ca_22377_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 1.9e-23 115.2 143 48.3
FAN23G1600 Fragaria x ananassa HOM05D004674 ORTHO05D045629 1.9e-23 115.2 78 76.9
SEGI_19277 Sequoiadendron giganteum HOM05D004674 ORTHO05D020551 7.2e-23 113.2 237 34.2
FAN14G4531 Fragaria x ananassa HOM05D004674 ORTHO05D020551 2.2e-19 101.7 74 74.3
Zm00001eb334700 Zea mays HOM05D004674 ORTHO05D007261 2.8e-19 101.3 71 70.4
Psat2g002040 Pisum sativum HOM05D004674 ORTHO05D327579 1.5e-17 95.5 182 41.2
GSVIVG01017515001 Vitis vinifera HOM05D004674 ORTHO05D020551 3.4e-17 94.4 57 75.4
HanXRQChr08g0221331 Helianthus annuus HOM05D004674 ORTHO05D021509 5.9e-17 93.6 160 43.1
GSVIVG01005333001 Vitis vinifera HOM05D004674 ORTHO05D020551 3.8e-16 90.9 57 71.9
Gohir.A06G159466 Gossypium hirsutum HOM05D004674 ORTHO05D029177 2.7e-14 84.7 52 78.8
Gorai.010G192800 Gossypium raimondii HOM05D004674 ORTHO05D029177 2.3e-13 81.6 52 76.9
arahy.Tifrunner.gnm1.ann1.TV0A1X Arachis hypogaea HOM05D004674 ORTHO05D007261 1.7e-11 75.5 128 39.8
Duzib248G0237 Durio zibethinus HOM05D004674 ORTHO05D020551 5.3e-10 70.5 43 76.7
SGA_v2.0_scaffold48G18033 Striga asiatica HOM05D004674 ORTHO05D051422 3.5e-09 67.8 113 36.3
MELO3C028160.2 Cucumis melo HOM05D004674 ORTHO05D029175 1.7e-08 65.5 36 88.9
Sabra05G0098800 Salix brachista HOM05D004674 ORTHO05D349121 5.5e-07 60.5 54 66.7
MELO3C001880.2 Cucumis melo HOM05D004674 ORTHO05D029175 8.0e-06 56.6 29 93.1
MELO3C028263.2 Cucumis melo HOM05D004674 ORTHO05D029175 8.0e-06 56.6 29 93.1


User provided reference genes

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