Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g06301 Fragaria vesca HOM05D059906 ORTHO05D045778 4.1e-86 321.2 151 100.0
FAN19G1138 Fragaria x ananassa HOM05D059906 ORTHO05D045778 1.1e-54 216.9 102 100.0
FAN03G0741 Fragaria x ananassa HOM05D000257 ORTHO05D008527 6.5e-31 137.9 116 64.7
FAN06G3742 Fragaria x ananassa HOM05D000257 ORTHO05D008527 1.2e-24 117.1 118 56.8
FvH4_7g08640 Fragaria vesca HOM05D000257 ORTHO05D008527 5.9e-24 114.8 120 56.7
FvH4_7g08660 Fragaria vesca HOM05D000257 ORTHO05D008527 1.1e-22 110.5 93 64.5
FAN01G1343 Fragaria x ananassa HOM05D000257 ORTHO05D008527 1.1e-22 110.5 93 64.5
FAN06G2951 Fragaria x ananassa HOM05D000257 ORTHO05D008527 1.1e-22 110.5 93 64.5
RcHm_v2.0_Chr1g0343651 Rosa chinensis HOM05D000257 ORTHO05D008527 3.0e-20 102.4 118 55.1
MD01G1105000 Malus domestica HOM05D000257 ORTHO05D008527 1.8e-12 76.6 88 47.7
Prupe.2G210300 Prunus persica HOM05D000257 ORTHO05D008527 4.0e-12 75.5 38 84.2
ClCG05G021160 Citrullus lanatus HOM05D000257 ORTHO05D008527 5.2e-12 75.1 38 84.2
TWI09G0108 Tripterygium wilfordii HOM05D000257 ORTHO05D008527 5.2e-12 75.1 106 44.3
MELO3C012412.2 Cucumis melo HOM05D000257 ORTHO05D008527 6.7e-12 74.7 38 84.2
CsaV3_5G036110 Cucumis sativus L. HOM05D000257 ORTHO05D008527 6.7e-12 74.7 38 84.2
Sed0016810 Sechium edule HOM05D000257 ORTHO05D008527 6.7e-12 74.7 38 81.6
ECA247G1681 Erigeron canadensis HOM05D000257 ORTHO05D008527 1.2e-11 73.9 38 81.6
Dinv32027 Davidia involucrata HOM05D000257 ORTHO05D008527 1.5e-11 73.6 38 78.9
Migut.N01847 Erythranthe guttata HOM05D000257 ORTHO05D008527 1.5e-11 73.6 38 81.6
Hma1.2p1_0367F.1_g137200 Hydrangea macrophylla HOM05D000257 ORTHO05D008527 2.6e-11 72.8 38 78.9
Rhsim04G0217000 Rhododendron simsii HOM05D000257 ORTHO05D008527 2.6e-11 72.8 38 78.9
vmacro08193 Vaccinium macrocarpon HOM05D000257 ORTHO05D008527 2.6e-11 72.8 38 78.9
vmacro08196 Vaccinium macrocarpon HOM05D000257 ORTHO05D008527 2.6e-11 72.8 38 78.9
Ca_26151_v3 Cicer arietinum L. HOM05D000257 ORTHO05D008527 3.3e-11 72.4 37 81.1
Actinidia21517 Actinidia chinensis HOM05D000257 ORTHO05D008527 4.4e-11 72.0 38 78.9
Nitab4.5_0000082g0080 Nicotiana tabacum HOM05D000257 ORTHO05D008527 4.4e-11 72.0 37 83.8
Nitab4.5_0000608g0130 Nicotiana tabacum HOM05D000257 ORTHO05D008527 4.4e-11 72.0 37 83.8
Thecc.10G079000 Theobroma cacao HOM05D000257 ORTHO05D008527 4.4e-11 72.0 36 83.3
Gohir.A05G412000 Gossypium hirsutum HOM05D000257 ORTHO05D008527 5.7e-11 71.6 90 45.6
Gohir.D04G004000 Gossypium hirsutum HOM05D000257 ORTHO05D008527 5.7e-11 71.6 90 45.6
Gorai.012G005300 Gossypium raimondii HOM05D000257 ORTHO05D008527 5.7e-11 71.6 90 45.6
Lj6g0017652 Lotus japonicus HOM05D000257 ORTHO05D008527 7.5e-11 71.2 37 78.4
Potri.008G036600 Populus trichocarpa HOM05D000257 ORTHO05D008527 7.5e-11 71.2 37 81.1
Sabra08G0024700 Salix brachista HOM05D000257 ORTHO05D008527 7.5e-11 71.2 37 81.1
Thecc.10G079400 Theobroma cacao HOM05D000257 ORTHO05D008527 7.5e-11 71.2 35 85.7
MSTRG.28037 Avicennia marina HOM05D000257 ORTHO05D008527 9.7e-11 70.9 38 81.6
COL.COLO4_12168 Corchorus olitorius HOM05D000257 ORTHO05D008527 1.3e-10 70.5 93 43.0
SalBow8G0753 Salvia bowleyana HOM05D000257 ORTHO05D008527 1.3e-10 70.5 39 79.5
CSS0045252 Camellia sinensis var. sinensis HOM05D000257 ORTHO05D008527 1.7e-10 70.1 37 78.4
SalBow8G4053 Salvia bowleyana HOM05D000257 ORTHO05D008527 1.7e-10 70.1 39 79.5
Psat3g192520 Pisum sativum HOM05D000257 ORTHO05D008527 2.2e-10 69.7 37 75.7
Medtr7g018630 Medicago truncatula HOM05D000257 ORTHO05D008527 2.8e-10 69.3 37 75.7
Sc06g0001690 Simmondsia chinensis HOM05D000257 ORTHO05D008527 2.8e-10 69.3 37 81.1
TWI63G0728 Tripterygium wilfordii HOM05D000257 ORTHO05D008527 2.8e-10 69.3 98 42.9
Eucgr.J01069 Eucalyptus grandis HOM05D000257 ORTHO05D008527 3.7e-10 68.9 38 76.3
Lalb_Chr18g0058281 Lupinus albus HOM05D000257 ORTHO05D008527 3.7e-10 68.9 36 83.3
PGSC0003DMG400008175 Solanum tuberosum HOM05D000257 ORTHO05D008527 3.7e-10 68.9 37 81.1
HanXRQChr15g0496031 Helianthus annuus HOM05D000257 ORTHO05D008527 4.8e-10 68.6 38 73.7
Thecc.05G230000 Theobroma cacao HOM05D000257 ORTHO05D008527 4.8e-10 68.6 34 85.3
Aa31LG5G20480 Aethionema arabicum HOM05D000257 ORTHO05D008527 6.3e-10 68.2 34 85.3
CAN.G641.18 Capsicum annuum HOM05D000257 ORTHO05D008527 6.3e-10 68.2 37 81.1
Peaxi162Scf00003g00407 Petunia axillaris HOM05D000257 ORTHO05D008527 6.3e-10 68.2 37 81.1
AL4G36420 Arabidopsis lyrata HOM05D000257 ORTHO05D008527 8.2e-10 67.8 37 78.4
AL92U10090 Arabidopsis lyrata HOM05D000257 ORTHO05D008527 8.2e-10 67.8 37 78.4
AT2G39120 Arabidopsis thaliana HOM05D000257 ORTHO05D008527 8.2e-10 67.8 37 78.4
BcaC02g12908 Brassica carinata HOM05D000257 ORTHO05D008527 8.2e-10 67.8 37 78.4
A04p29790 Brassica napus HOM05D000257 ORTHO05D008527 8.2e-10 67.8 37 78.4
C04p67050 Brassica napus HOM05D000257 ORTHO05D008527 8.2e-10 67.8 37 78.4
BolC4t28207H Brassica oleracea HOM05D000257 ORTHO05D008527 8.2e-10 67.8 37 78.4
BraA04t18441Z Brassica rapa HOM05D000257 ORTHO05D008527 8.2e-10 67.8 37 78.4
Carub.0004s2117 Capsella rubella HOM05D000257 ORTHO05D008527 8.2e-10 67.8 37 78.4
CARHR133900 Cardamine hirsuta HOM05D000257 ORTHO05D008527 8.2e-10 67.8 37 78.4
CiPaw.01G270200 Carya illinoinensis HOM05D000257 ORTHO05D008527 8.2e-10 67.8 36 80.6
Duzib114G0678 Durio zibethinus HOM05D000257 ORTHO05D008527 8.2e-10 67.8 34 85.3
Thhalv10017943m.g Eutrema salsugineum HOM05D000257 ORTHO05D008527 8.2e-10 67.8 37 78.4
Sp4g21470 Schrenkiella parvula HOM05D000257 ORTHO05D008527 8.2e-10 67.8 37 78.4
HanXRQChr09g0270071 Helianthus annuus HOM05D000257 ORTHO05D008527 1.1e-09 67.4 38 73.7
Lj5C274T18 Lonicera japonica HOM05D000257 ORTHO05D008527 1.1e-09 67.4 37 78.4
QL08p054958 Quercus lobata HOM05D000257 ORTHO05D008527 1.1e-09 67.4 98 41.8
DCAR_030802 Daucus carota HOM05D000257 ORTHO05D008527 1.4e-09 67.0 37 75.7
Glyma.09G029500 Glycine max HOM05D000257 ORTHO05D008527 1.8e-09 66.6 37 75.7
Glyma.09G031300 Glycine max HOM05D000257 ORTHO05D008527 1.8e-09 66.6 37 75.7
Manes.07G095810 Manihot esculenta HOM05D000257 ORTHO05D008527 1.8e-09 66.6 38 73.7
Manes.07G095818 Manihot esculenta HOM05D000257 ORTHO05D008527 1.8e-09 66.6 38 73.7
Manes.07G097202 Manihot esculenta HOM05D000257 ORTHO05D008527 1.8e-09 66.6 38 73.7
Solyc10g079160.1 Solanum lycopersicum HOM05D000257 ORTHO05D008527 1.8e-09 66.6 37 78.4
Sopen10g029810 Solanum pennellii HOM05D000257 ORTHO05D008527 1.8e-09 66.6 37 78.4
Aqoxy4G02721 Aquilegia oxysepala HOM05D000257 ORTHO05D008527 2.4e-09 66.2 38 73.7
Phvul.006G123100 Phaseolus vulgaris HOM05D000257 ORTHO05D008527 2.4e-09 66.2 89 46.1
THA.LOC104825223 Tarenaya hassleriana HOM05D000257 ORTHO05D008527 2.4e-09 66.2 36 80.6
Cpa.g.sc53.103 Carica papaya HOM05D000257 ORTHO05D008527 3.1e-09 65.9 33 87.9
TAR623G1216 Trochodendron aralioides HOM05D000257 ORTHO05D008527 3.1e-09 65.9 38 73.7
TAR629G1014 Trochodendron aralioides HOM05D000257 ORTHO05D008527 3.1e-09 65.9 38 73.7
Atru.chr12.824 Acer truncatum HOM05D000257 ORTHO05D008527 4.1e-09 65.5 34 82.4
Cc11_g04820 Coffea canephora HOM05D000257 ORTHO05D008527 5.3e-09 65.1 35 77.1
Manes.07G095800 Manihot esculenta HOM05D000257 ORTHO05D008527 5.3e-09 65.1 38 71.1
Manes.07G095816 Manihot esculenta HOM05D000257 ORTHO05D008527 5.3e-09 65.1 38 71.1
Manes.07G095824 Manihot esculenta HOM05D000257 ORTHO05D008527 5.3e-09 65.1 38 71.1
Manes.07G097000 Manihot esculenta HOM05D000257 ORTHO05D008527 5.3e-09 65.1 38 71.1
VMungo0540G1055 Vigna mungo HOM05D000257 ORTHO05D008527 5.3e-09 65.1 34 79.4
arahy.Tifrunner.gnm1.ann1.NDR98S Arachis hypogaea HOM05D000257 ORTHO05D008527 9.1e-09 64.3 91 41.8
arahy.Tifrunner.gnm1.ann1.XFB8DA Arachis hypogaea HOM05D000257 ORTHO05D008527 9.1e-09 64.3 91 41.8
Manes.07G095600 Manihot esculenta HOM05D000257 ORTHO05D008527 1.2e-08 63.9 38 71.1
Manes.07G095604 Manihot esculenta HOM05D000257 ORTHO05D008527 1.2e-08 63.9 38 71.1
Cfa012474 Carpinus fangiana HOM05D000257 ORTHO05D008527 1.6e-08 63.5 37 75.7
Haze_08188 Corylus avellana HOM05D000257 ORTHO05D008527 1.6e-08 63.5 37 75.7
SHI08919 Sapria himalayana HOM05D000257 ORTHO05D008527 1.6e-08 63.5 36 77.8
unitig_0.g2289 Utricularia gibba HOM05D000257 ORTHO05D008527 1.6e-08 63.5 39 76.9
ATR0796G314 Amborella trichopoda HOM05D000257 ORTHO05D008527 2.0e-08 63.2 35 77.1
AUR62001018 Chenopodium quinoa HOM05D000257 ORTHO05D008527 2.7e-08 62.8 38 73.7
AUR62004936 Chenopodium quinoa HOM05D000257 ORTHO05D008527 2.7e-08 62.8 38 73.7
HPP92_023064 Vanilla planifolia HOM05D000257 ORTHO05D008527 2.7e-08 62.8 36 69.4
Ah.06g192310 Amaranthus hybridus HOM05D005585 ORTHO05D008527 3.5e-08 62.4 37 78.4
Ciclev10033810m.g Citrus clementina HOM05D000257 ORTHO05D008527 3.5e-08 62.4 91 40.7
Nn1g08915 Nelumbo nucifera HOM05D000257 ORTHO05D008527 3.5e-08 62.4 38 68.4
Hund22119 Selenicereus undatus HOM05D000257 ORTHO05D008527 3.5e-08 62.4 35 77.1
EL10Ac4g09126 Beta vulgaris HOM05D000257 ORTHO05D008527 5.9e-08 61.6 37 73.0
Os03g0786600 Oryza sativa ssp. japonica HOM05D000257 ORTHO05D008527 5.0e-07 58.5 35 68.6
Zm00001eb213410 Zea mays HOM05D000257 ORTHO05D008527 3.2e-06 55.8 35 65.7
MBI17_g24556_MAGBIO Magnolia biondii HOM05D000257 ORTHO05D008527 5.5e-06 55.1 33 75.8


User provided reference genes

Program Settings