Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G1870 Fragaria x ananassa HOM05D002899 ORTHO05D022703 6.6e-44 180.3 88 100.0
FAN26G2125 Fragaria x ananassa HOM05D002899 ORTHO05D022703 1.2e-40 169.5 87 94.3
FvH4_5g27320 Fragaria vesca HOM05D002899 ORTHO05D003850 4.9e-39 164.1 88 92.0
FAN08G1317 Fragaria x ananassa HOM05D002899 ORTHO05D003850 6.4e-39 163.7 88 90.9
FAN18G3509 Fragaria x ananassa HOM05D002899 ORTHO05D003850 1.9e-35 152.1 88 86.4
FAN04G0489 Fragaria x ananassa HOM05D002899 ORTHO05D003850 8.1e-34 146.7 88 83.0
RcHm_v2.0_Chr7g0218481 Rosa chinensis HOM05D002899 ORTHO05D003850 6.9e-25 117.1 87 66.7
PGR142G0302 Punica granatum HOM05D002899 ORTHO05D003850 4.5e-24 114.4 90 63.3
CDE05G1238 Ceratophyllum demersum HOM05D002899 ORTHO05D003850 5.8e-24 114.0 89 62.9
Actinidia08787 Actinidia chinensis HOM05D002899 ORTHO05D003850 1.3e-23 112.8 91 63.7
Glyma.16G154400 Glycine max HOM05D002899 ORTHO05D003850 1.7e-23 112.5 91 62.6
GSVIVG01024262001 Vitis vinifera HOM05D002899 ORTHO05D003850 3.8e-23 111.3 86 65.1
Prupe.5G048700 Prunus persica HOM05D002899 ORTHO05D003850 4.9e-23 110.9 90 62.2
Cfa016110 Carpinus fangiana HOM05D002899 ORTHO05D003850 8.4e-23 110.2 93 62.4
Glyma.02G073100 Glycine max HOM05D002899 ORTHO05D003850 8.4e-23 110.2 91 61.5
Atru.chr12.1814 Acer truncatum HOM05D002899 ORTHO05D003850 1.1e-22 109.8 92 63.0
Potri.013G076000 Populus trichocarpa HOM05D002899 ORTHO05D003850 2.5e-22 108.6 89 62.9
Peaxi162Scf01026g00001 Petunia axillaris HOM05D002899 ORTHO05D003850 3.2e-22 108.2 92 62.0
Actinidia27037 Actinidia chinensis HOM05D002899 ORTHO05D003850 4.2e-22 107.8 91 62.6
THA.LOC104823791 Tarenaya hassleriana HOM05D002899 ORTHO05D003850 4.2e-22 107.8 94 56.4
VMungo0464G0921 Vigna mungo HOM05D002899 ORTHO05D003850 4.2e-22 107.8 91 59.3
Haze_00347 Corylus avellana HOM05D002899 ORTHO05D003850 9.3e-22 106.7 93 62.4
MD08G1250100 Malus domestica HOM05D002899 ORTHO05D003850 9.3e-22 106.7 90 60.0
Eucgr.G00845 Eucalyptus grandis HOM05D002899 ORTHO05D003850 1.2e-21 106.3 93 61.3
Phvul.004G082100 Phaseolus vulgaris HOM05D002899 ORTHO05D003850 1.6e-21 105.9 91 59.3
THA.LOC104805726 Tarenaya hassleriana HOM05D002899 ORTHO05D003850 2.7e-21 105.1 94 55.3
Cc05_g11170 Coffea canephora HOM05D002899 ORTHO05D003850 3.5e-21 104.8 96 56.2
Dinv04696 Davidia involucrata HOM05D002899 ORTHO05D003850 3.5e-21 104.8 92 62.0
Lj1g0022689 Lotus japonicus HOM05D002899 ORTHO05D003850 3.5e-21 104.8 91 59.3
HanXRQChr15g0463941 Helianthus annuus HOM05D002899 ORTHO05D003850 6.1e-21 104.0 91 60.4
Hma1.2p1_1059F.1_g253030 Hydrangea macrophylla HOM05D002899 ORTHO05D003850 7.9e-21 103.6 93 63.4
TAR633G0361 Trochodendron aralioides HOM05D002899 ORTHO05D003850 7.9e-21 103.6 90 57.8
Sc11g0002190 Simmondsia chinensis HOM05D002899 ORTHO05D003850 1.0e-20 103.2 95 56.8
Cpa.g.sc43.153 Carica papaya HOM05D002899 ORTHO05D003850 1.3e-20 102.8 95 58.9
Sed0007587 Sechium edule HOM05D002899 ORTHO05D003850 1.3e-20 102.8 90 65.6
Sc09g0008520 Simmondsia chinensis HOM05D002899 ORTHO05D003850 1.3e-20 102.8 95 55.8
CSS0044416 Camellia sinensis var. sinensis HOM05D002899 ORTHO05D003850 1.8e-20 102.4 97 56.7
Duzib128G1532 Durio zibethinus HOM05D002899 ORTHO05D003850 1.8e-20 102.4 90 62.2
Nn3g21896 Nelumbo nucifera HOM05D002899 ORTHO05D003850 1.8e-20 102.4 89 58.4
Atru.chr6.914 Acer truncatum HOM05D002899 ORTHO05D003850 3.0e-20 101.7 89 56.2
Nitab4.5_0009225g0010 Nicotiana tabacum HOM05D002899 ORTHO05D003850 3.9e-20 101.3 92 58.7
SEGI_23967 Sequoiadendron giganteum HOM05D002899 ORTHO05D003850 5.1e-20 100.9 89 53.9
DCAR_022992 Daucus carota HOM05D002899 ORTHO05D003850 6.7e-20 100.5 93 55.9
Ah.12g064150 Amaranthus hybridus HOM05D002899 ORTHO05D003850 1.1e-19 99.8 96 54.2
MD15G1445100 Malus domestica HOM05D002899 ORTHO05D003850 1.1e-19 99.8 90 57.8
Gohir.D11G234700 Gossypium hirsutum HOM05D002899 ORTHO05D003850 1.5e-19 99.4 92 56.5
Gorai.007G247300 Gossypium raimondii HOM05D002899 ORTHO05D003850 1.5e-19 99.4 92 56.5
Sopen10g001950 Solanum pennellii HOM05D002899 ORTHO05D003850 1.9e-19 99.0 93 55.9
PGSC0003DMG400014409 Solanum tuberosum HOM05D002899 ORTHO05D003850 1.9e-19 99.0 93 55.9
CiPaw.05G210800 Carya illinoinensis HOM05D002899 ORTHO05D003850 2.5e-19 98.6 93 54.8
Gohir.A11G221200 Gossypium hirsutum HOM05D002899 ORTHO05D003850 4.3e-19 97.8 92 55.4
SGA_v2.0_scaffold39G15236 Striga asiatica HOM05D002899 ORTHO05D003850 1.3e-18 96.3 92 57.6
Carub.0001s1679 Capsella rubella HOM05D002899 ORTHO05D003850 1.6e-18 95.9 96 53.1
Lj5P331T27 Lonicera japonica HOM05D002899 ORTHO05D003850 1.6e-18 95.9 94 55.3
HPP92_017274 Vanilla planifolia HOM05D002899 ORTHO05D003850 1.6e-18 95.9 93 57.0
BraA09t41433Z Brassica rapa HOM05D002899 ORTHO05D003850 2.2e-18 95.5 97 52.6
Lalb_Chr16g0385381 Lupinus albus HOM05D002899 ORTHO05D003850 2.8e-18 95.1 92 52.2
Lalb_Chr09g0328871 Lupinus albus HOM05D002899 ORTHO05D003850 3.7e-18 94.7 92 55.4
Lj9C24T10 Lonicera japonica HOM05D002899 ORTHO05D003850 4.8e-18 94.4 94 54.3
C08p44090 Brassica napus HOM05D002899 ORTHO05D003850 6.3e-18 94.0 97 51.5
CARHR017600 Cardamine hirsuta HOM05D002899 ORTHO05D003850 6.3e-18 94.0 96 52.1
Lj9A25T22 Lonicera japonica HOM05D002899 ORTHO05D003850 6.3e-18 94.0 94 54.3
Sc06g0010130 Simmondsia chinensis HOM05D002899 ORTHO05D003850 6.3e-18 94.0 91 52.7
TAR375G0529 Trochodendron aralioides HOM05D002899 ORTHO05D003850 8.2e-18 93.6 90 52.2
ATR1098G071 Amborella trichopoda HOM05D002899 ORTHO05D003850 1.1e-17 93.2 90 47.8
Mapoly0085s0035 Marchantia polymorpha HOM05D002899 ORTHO05D003850 1.1e-17 93.2 84 52.4
SHI02598 Sapria himalayana HOM05D002899 ORTHO05D003850 1.1e-17 93.2 112 48.2
Aa31LG11G5630 Aethionema arabicum HOM05D002899 ORTHO05D003850 1.4e-17 92.8 93 49.5
A09p60630 Brassica napus HOM05D002899 ORTHO05D003850 1.4e-17 92.8 97 51.5
MSTRG.22435 Avicennia marina HOM05D002899 ORTHO05D003850 1.8e-17 92.4 93 54.8
Ciclev10030682m.g Citrus clementina HOM05D002899 ORTHO05D003850 2.4e-17 92.0 94 50.0
Manes.09G130600 Manihot esculenta HOM05D002899 ORTHO05D003850 2.4e-17 92.0 96 53.1
Sp1g15190 Schrenkiella parvula HOM05D002899 ORTHO05D003850 2.4e-17 92.0 95 51.6
BcaC07g41444 Brassica carinata HOM05D002899 ORTHO05D003850 3.1e-17 91.7 94 52.1
BolC8t51957H Brassica oleracea HOM05D002899 ORTHO05D003850 3.1e-17 91.7 94 52.1
MBI02_g25679_MAGBIO Magnolia biondii HOM05D002899 ORTHO05D003850 3.1e-17 91.7 85 55.3
unitig_21.g20691 Utricularia gibba HOM05D002899 ORTHO05D003850 3.1e-17 91.7 90 54.4
Prupe.1G587200 Prunus persica HOM05D002899 ORTHO05D003850 4.1e-17 91.3 92 54.3
Ah.12g063970 Amaranthus hybridus HOM05D002899 ORTHO05D003850 5.3e-17 90.9 96 52.1
ClCG02G007900 Citrullus lanatus HOM05D002899 ORTHO05D003850 6.9e-17 90.5 90 58.9
Oeu028990.1 Olea europaea HOM05D002899 ORTHO05D003850 9.0e-17 90.1 90 55.6
MSTRG.8559 Avicennia marina HOM05D002899 ORTHO05D003850 1.2e-16 89.7 92 54.3
AT1G17070 Arabidopsis thaliana HOM05D002899 ORTHO05D003850 2.0e-16 89.0 96 50.0
Sed0003802 Sechium edule HOM05D002899 ORTHO05D003850 2.0e-16 89.0 94 52.1
FvH4_5g27997 Fragaria vesca HOM05D013896 ORTHO05D022703 4.5e-16 87.8 47 91.5
Cre07.g325713 Chlamydomonas reinhardtii HOM05D002899 ORTHO05D003850 5.9e-16 87.4 90 55.6
Oeu027900.2 Olea europaea HOM05D002899 ORTHO05D003850 7.7e-16 87.0 90 54.4
Rhsim06G0232100 Rhododendron simsii HOM05D002899 ORTHO05D003850 1.3e-15 86.3 91 49.5
arahy.Tifrunner.gnm1.ann1.VWPR3S Arachis hypogaea HOM05D002899 ORTHO05D003850 2.2e-15 85.5 85 56.5
AUR62030668 Chenopodium quinoa HOM05D002899 ORTHO05D003850 2.2e-15 85.5 94 45.7
Ca_23166_v3 Cicer arietinum L. HOM05D002899 ORTHO05D003850 2.2e-15 85.5 88 48.9
TPR.G26966 Trifolium pratense HOM05D002899 ORTHO05D003850 2.2e-15 85.5 90 48.9
MELO3C024757.2 Cucumis melo HOM05D002899 ORTHO05D003850 3.8e-15 84.7 90 52.2
CsaV3_2G035840 Cucumis sativus L. HOM05D002899 ORTHO05D003850 3.8e-15 84.7 90 52.2
Migut.F00929 Erythranthe guttata HOM05D002899 ORTHO05D003850 5.0e-15 84.3 92 53.3
AL1G29240 Arabidopsis lyrata HOM05D002899 ORTHO05D003850 6.5e-15 84.0 96 47.9
Pp3c22_1760 Physcomitrium patens HOM05D002899 ORTHO05D003850 6.5e-15 84.0 88 51.1
arahy.Tifrunner.gnm1.ann1.2Q8IWK Arachis hypogaea HOM05D002899 ORTHO05D003850 8.5e-15 83.6 84 53.6
PSO339G6595 Papaver somniferum HOM05D002899 ORTHO05D003850 1.1e-14 83.2 99 50.5
Pp3c19_6430 Physcomitrium patens HOM05D002899 ORTHO05D003850 1.1e-14 83.2 87 48.3
arahy.Tifrunner.gnm1.ann1.T623PT Arachis hypogaea HOM05D002899 ORTHO05D003850 1.4e-14 82.8 88 47.7
EL10Ac2g02592 Beta vulgaris HOM05D002899 ORTHO05D003850 1.9e-14 82.4 92 47.8
ECA247G1085 Erigeron canadensis HOM05D002899 ORTHO05D003850 1.9e-14 82.4 87 54.0
Thhalv10006789m.g Eutrema salsugineum HOM05D002899 ORTHO05D003850 1.9e-14 82.4 95 47.4
TPR.G27642 Trifolium pratense HOM05D002899 ORTHO05D003850 1.9e-14 82.4 92 51.1
AUR62024879 Chenopodium quinoa HOM05D002899 ORTHO05D003850 2.5e-14 82.0 94 44.7
Dinv36250 Davidia involucrata HOM05D002899 ORTHO05D003850 3.2e-14 81.6 92 47.8
FAN16G1432 Fragaria x ananassa HOM05D013896 ORTHO05D022703 3.2e-14 81.6 53 75.5
Psat4g207720 Pisum sativum HOM05D002899 ORTHO05D003850 3.2e-14 81.6 91 48.4
Sc09g0008570 Simmondsia chinensis HOM05D002899 ORTHO05D003850 5.5e-14 80.9 76 56.6
Lsat_1_v5_gn_9_37500 Lactuca sativa HOM05D002899 ORTHO05D003850 7.2e-14 80.5 92 46.7
TWI38G1169 Tripterygium wilfordii HOM05D002899 ORTHO05D003850 3.6e-13 78.2 92 44.6
PSO384G0661 Papaver somniferum HOM05D002899 ORTHO05D003850 1.0e-12 76.6 100 45.0
Zm00001eb135930 Zea mays HOM05D002899 ORTHO05D003850 1.4e-12 76.3 93 47.3
Medtr8g010350 Medicago truncatula HOM05D002899 ORTHO05D003850 3.0e-12 75.1 93 44.1
Rhsim03G0225400 Rhododendron simsii HOM05D002899 ORTHO05D003850 3.0e-12 75.1 88 48.9
COL.COLO4_33467 Corchorus olitorius HOM05D002899 ORTHO05D003850 6.7e-12 73.9 77 51.9
FAN18G0900 Fragaria x ananassa HOM05D013896 ORTHO05D022703 8.8e-12 73.6 38 92.1
BcaC07g41394 Brassica carinata HOM05D002899 ORTHO05D003850 4.3e-11 71.2 92 43.5
Mapoly0121s0014 Marchantia polymorpha HOM05D002899 ORTHO05D003850 2.8e-10 68.6 84 41.7
FvH4_2g12220 Fragaria vesca HOM05D000564 ORTHO05D001690 6.3e-10 67.4 47 72.3
Os12g0615800 Oryza sativa ssp. japonica HOM05D002899 ORTHO05D003850 6.3e-10 67.4 90 43.3
Eucgr.G00836 Eucalyptus grandis HOM05D002899 ORTHO05D003850 8.2e-10 67.0 62 59.7
COL.COLO4_32216 Corchorus olitorius HOM05D002899 ORTHO05D025163 9.1e-09 63.5 67 53.7
Aqoxy2G00924 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 1.5e-08 62.8 96 38.5
Solyc10g005990.4 Solanum lycopersicum HOM05D002899 ORTHO05D003850 2.6e-08 62.0 47 61.7
FAN09G4753 Fragaria x ananassa HOM05D013896 ORTHO05D022703 3.4e-08 61.6 54 61.1
FvH4_4g03135 Fragaria vesca HOM05D002899 ORTHO05D025163 7.7e-08 60.5 46 58.7
TPR.G29541 Trifolium pratense HOM05D002899 ORTHO05D003850 2.2e-07 58.9 85 43.5
HanXRQChr10g0291501 Helianthus annuus HOM05D002899 ORTHO05D003850 5.0e-07 57.8 65 49.2
AagrBONN_evm.TU.Sc2ySwM_340.341 Anthoceros agrestis HOM05D002899 ORTHO05D003850 3.2e-06 55.1 85 38.8
BcaC05g25671 Brassica carinata HOM05D002899 ORTHO05D003850 3.2e-06 55.1 60 53.3
BolC5t30252H Brassica oleracea HOM05D002899 ORTHO05D010192 3.2e-06 55.1 60 53.3
C05p15440 Brassica napus HOM05D002899 ORTHO05D003850 9.4e-06 53.5 60 51.7


User provided reference genes

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