Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 0.0e+00 1562.7 797 100.0
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 0.0e+00 1540.8 802 98.4
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 0.0e+00 1531.5 789 99.0
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 0.0e+00 1501.9 797 96.4
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 0.0e+00 1478.4 795 95.8
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 0.0e+00 1438.3 802 92.4
MD15G1140800 Malus domestica HOM05D003684 ORTHO05D004428 0.0e+00 1139.4 851 72.3
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 0.0e+00 1135.9 808 74.0
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 0.0e+00 1117.1 711 81.7
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 0.0e+00 1088.9 808 72.2
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 1.6e-309 1065.8 820 69.5
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 2.7e-309 1065.1 825 68.8
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 2.5e-307 1058.5 816 69.4
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 5.6e-307 1057.4 810 68.6
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 1.6e-306 1055.8 822 69.2
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.6e-306 1055.8 807 70.0
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 5.2e-305 1050.8 826 68.0
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 4.1e-302 1041.2 819 68.7
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 2.1e-301 1038.9 809 67.6
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 4.3e-299 1031.2 809 68.2
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 5.6e-299 1030.8 813 68.0
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.1e-298 1028.9 809 68.1
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 8.1e-298 1026.9 812 68.3
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 8.1e-298 1026.9 818 68.1
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 2.6e-296 1021.9 815 67.4
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 9.9e-296 1020.0 813 67.4
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 9.9e-296 1020.0 818 67.5
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 1.3e-295 1019.6 825 66.9
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 6.4e-295 1017.3 826 67.3
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 2.4e-294 1015.4 813 67.3
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 1.6e-293 1012.7 815 65.9
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 4.6e-293 1011.1 816 66.7
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 3.3e-291 1005.0 810 65.9
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 7.3e-291 1003.8 816 66.1
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 1.4e-289 999.6 814 66.8
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 7.6e-288 993.8 813 66.9
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 9.3e-286 986.9 848 65.1
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 9.6e-283 976.9 815 64.5
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 2.8e-282 975.3 813 64.9
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 3.6e-282 974.9 815 64.4
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 6.9e-281 970.7 786 67.9
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 9.0e-281 970.3 835 63.4
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 6.4e-279 964.1 818 64.9
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 9.3e-278 960.3 813 64.7
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 3.9e-276 954.9 721 69.6
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 5.1e-276 954.5 823 64.3
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 3.8e-271 938.3 811 63.6
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 7.4e-267 924.1 834 62.4
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 2.2e-263 912.5 833 60.7
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 5.7e-259 897.9 817 59.7
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 3.7e-258 895.2 817 59.6
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 1.4e-257 893.3 814 61.2
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 5.8e-256 887.9 827 60.1
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 1.4e-254 883.2 864 56.7
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 7.1e-254 880.9 809 61.2
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 1.8e-249 866.3 772 61.3
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 5.9e-248 861.3 827 60.1
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 2.9e-247 859.0 816 59.6
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 5.1e-244 848.2 822 60.6
Peaxi162Scf00819g00027 Petunia axillaris HOM05D003684 ORTHO05D004428 4.3e-243 845.1 838 57.6
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 7.4e-243 844.3 858 56.1
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 1.1e-241 840.5 874 56.5
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 1.4e-238 830.1 678 67.3
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 7.2e-238 827.8 811 59.8
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 2.1e-237 826.2 801 58.4
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 3.6e-237 825.5 833 57.0
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 7.9e-237 824.3 814 59.3
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 1.0e-236 823.9 813 57.4
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 1.7e-234 816.6 917 53.4
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 1.8e-233 813.1 920 52.4
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 1.8e-233 813.1 984 51.9
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 8.5e-231 804.3 839 55.9
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 2.7e-229 799.3 913 53.3
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 2.6e-227 792.7 813 57.9
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 2.6e-227 792.7 826 55.6
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 3.3e-227 792.3 819 55.9
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 1.3e-226 790.4 916 51.9
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 8.8e-220 767.7 919 50.5
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 3.4e-219 765.8 538 73.6
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 1.7e-215 753.4 556 69.4
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 1.2e-213 747.3 928 49.8
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 1.0e-212 744.2 903 51.7
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 1.8e-212 743.4 908 51.4
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 5.7e-211 738.4 910 51.6
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 1.3e-210 737.3 919 51.1
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 1.4e-209 733.8 811 52.5
AUR62006943 Chenopodium quinoa HOM05D003684 ORTHO05D004428 3.1e-209 732.6 821 54.3
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 9.1e-209 731.1 776 54.5
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 7.7e-208 728.0 818 53.9
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 1.0e-207 727.6 813 52.2
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 6.6e-207 724.9 1049 46.3
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 8.6e-207 724.5 806 53.1
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 2.6e-203 713.0 467 78.2
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 7.5e-203 711.4 764 54.6
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 8.3e-202 708.0 813 53.4
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 1.0e-199 701.0 816 51.5
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 2.3e-199 699.9 797 51.4
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 9.5e-198 694.5 812 50.5
Potri.T044400 Populus trichocarpa HOM05D003684 ORTHO05D004428 4.9e-194 682.2 627 61.6
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 1.4e-193 680.6 911 48.5
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 7.8e-192 674.9 910 48.2
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 1.7e-191 673.7 802 51.0
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 3.9e-191 672.5 814 49.8
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 7.5e-187 658.3 837 50.1
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 2.7e-184 649.8 794 50.6
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 2.3e-183 646.7 815 49.3
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 7.3e-174 615.1 411 74.7
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 8.1e-173 611.7 1084 40.2
Cpa.g.sc138.52 Carica papaya HOM05D003684 ORTHO05D004428 8.4e-170 601.7 367 79.8
Sabra19G0000700 Salix brachista HOM05D003684 ORTHO05D004428 1.5e-166 590.9 355 81.1
Sc09g0001960 Simmondsia chinensis HOM05D003684 ORTHO05D004428 1.4e-161 574.3 342 81.3
Sabra19G0012100 Salix brachista HOM05D003684 ORTHO05D004428 3.5e-160 569.7 355 78.6
Nn1g08436 Nelumbo nucifera HOM05D003684 ORTHO05D004428 5.1e-159 565.8 659 51.6
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 3.4e-155 553.1 799 46.4
SalBow8G3946 Salvia bowleyana HOM05D003684 ORTHO05D004428 6.7e-151 538.9 402 66.9
BcaB08g37259 Brassica carinata HOM05D003684 ORTHO05D004428 2.6e-147 526.9 446 63.5
BraA10t44878Z Brassica rapa HOM05D003684 ORTHO05D004428 1.7e-146 524.2 361 72.6
C09p68560 Brassica napus HOM05D003684 ORTHO05D004428 2.5e-142 510.4 380 68.4
Cc07_g19760 Coffea canephora HOM05D003684 ORTHO05D004428 1.8e-140 504.2 343 70.8
MSTRG.2470 Avicennia marina HOM05D003684 ORTHO05D004428 5.3e-140 502.7 607 50.4
Haze_19362 Corylus avellana HOM05D003684 ORTHO05D004428 1.4e-137 494.6 454 63.7
ATR1136G078 Amborella trichopoda HOM05D003684 ORTHO05D004428 1.9e-137 494.2 352 68.5
Sc06g0005260 Simmondsia chinensis HOM05D003684 ORTHO05D004428 1.9e-137 494.2 509 53.8
Actinidia36575 Actinidia chinensis HOM05D003684 ORTHO05D004428 3.0e-135 486.9 412 64.1
HPP92_003711 Vanilla planifolia HOM05D003684 ORTHO05D004428 8.7e-135 485.3 646 47.2
Oeu034404.1 Olea europaea HOM05D003684 ORTHO05D004428 1.6e-133 481.1 291 81.1
A10p28300 Brassica napus HOM05D003684 ORTHO05D004428 2.4e-132 477.2 377 65.0
Lj2C616G3 Lonicera japonica HOM05D003684 ORTHO05D004428 3.1e-132 476.9 317 75.7
DCAR_019948 Daucus carota HOM05D003684 ORTHO05D004428 4.2e-129 466.5 410 57.8
BolC9t59599H Brassica oleracea HOM05D003684 ORTHO05D004428 1.8e-124 451.1 368 64.7
Pp3c3_32800 Physcomitrium patens HOM05D003684 ORTHO05D004428 5.1e-119 433.0 427 52.9
MBI03_g18673_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 8.8e-119 432.2 272 79.0
SMO356G0426 Selaginella moellendorffii HOM05D003684 ORTHO05D004428 1.3e-114 418.3 422 54.7
Pp3c8_5360 Physcomitrium patens HOM05D003684 ORTHO05D004428 3.2e-113 413.7 444 51.6
MELO3C023205.2 Cucumis melo HOM05D003684 ORTHO05D004428 9.4e-113 412.1 451 52.8
HPP92_007640 Vanilla planifolia HOM05D003684 ORTHO05D004428 2.7e-112 410.6 681 40.5
Pp3c3_30960 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.2e-107 395.2 431 50.1
Cpa.g.sc138.51 Carica papaya HOM05D003684 ORTHO05D004428 5.7e-102 376.3 363 59.5
Sabra19G0011700 Salix brachista HOM05D003684 ORTHO05D004428 1.3e-101 375.2 460 52.0
AagrBONN_evm.TU.Sc2ySwM_228.5259 Anthoceros agrestis HOM05D003684 ORTHO05D004428 1.1e-100 372.1 437 46.9
Potri.018G145546 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.6e-99 368.2 241 77.6
SGA_v2.0_scaffold51G18855 Striga asiatica HOM05D003684 ORTHO05D004428 7.7e-99 365.9 315 58.7
PGSC0003DMG400023330 Solanum tuberosum HOM05D003684 ORTHO05D004428 7.2e-97 359.4 457 48.4
Mapoly0050s0019 Marchantia polymorpha HOM05D003684 ORTHO05D004428 5.2e-95 353.2 643 40.1
Oeu034403.1 Olea europaea HOM05D003684 ORTHO05D004428 2.6e-94 350.9 443 48.8
Potri.018G145542 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.2e-91 342.0 350 58.0
Lj2C616T2 Lonicera japonica HOM05D003684 ORTHO05D004428 5.0e-90 336.7 574 46.3
CDE02G3206 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 2.8e-88 330.9 603 38.5
CSS0015943 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.4e-87 328.6 478 48.3
Ciclev10026566m.g Citrus clementina HOM05D003684 ORTHO05D004428 5.9e-83 313.2 185 82.7
DCAR_009622 Daucus carota HOM05D003684 ORTHO05D004428 5.9e-83 313.2 415 48.9
CSS0049380 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 4.9e-77 293.5 261 61.3
MSTRG.2469 Avicennia marina HOM05D003684 ORTHO05D004428 1.1e-76 292.4 197 74.6
CBR_g645 Chara braunii HOM05D003684 ORTHO05D004428 1.9e-73 281.6 411 40.1
CDE02G3840 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 6.4e-69 266.5 181 72.4
Sc09g0001970 Simmondsia chinensis HOM05D003684 ORTHO05D004428 3.6e-64 250.8 469 43.3
ATR1136G068 Amborella trichopoda HOM05D003684 ORTHO05D004428 9.9e-62 242.7 459 39.4
MCO05G109 Micromonas commoda HOM05D003684 ORTHO05D004428 1.1e-60 239.2 382 38.5
MBI01_g42406_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 1.7e-58 231.9 151 74.2
HanXRQChr01g0009441 Helianthus annuus HOM05D003684 ORTHO05D004428 3.9e-58 230.7 183 65.6
Cre03.g182600 Chlamydomonas reinhardtii HOM05D003684 ORTHO05D004428 4.3e-57 227.3 347 37.8
Cc07_g19750 Coffea canephora HOM05D003684 ORTHO05D004428 5.8e-54 216.9 185 61.1
Aqoxy391s001 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 1.9e-44 185.3 98 89.8
Mapoly0024s0027 Marchantia polymorpha HOM05D003684 ORTHO05D004428 5.4e-44 183.7 513 33.3
Cc07_g19740 Coffea canephora HOM05D003684 ORTHO05D004428 9.3e-44 183.0 148 60.8
PRCOL_00004531 Prasinoderma coloniale HOM05D003684 ORTHO05D028742 5.1e-42 177.2 327 34.9
TPR.G16635 Trifolium pratense HOM05D003684 ORTHO05D004428 4.9e-37 160.6 216 50.9
Cc00_g24540 Coffea canephora HOM05D003684 ORTHO05D004428 8.7e-34 149.8 85 81.2
Sabra01G0044800 Salix brachista HOM05D003684 ORTHO05D004428 1.4e-23 115.9 65 84.6
Lsat_1_v5_gn_6_89680 Lactuca sativa HOM05D003684 ORTHO05D004428 1.8e-23 115.5 132 51.5
HanXRQChr17g0567611 Helianthus annuus HOM05D003684 ORTHO05D004428 3.4e-22 111.3 63 84.1
SEGI_34739 Sequoiadendron giganteum HOM05D003684 ORTHO05D004428 1.3e-18 99.4 65 73.8
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.1e-17 96.3 127 48.8
CSS0003103 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.3e-16 92.8 66 71.2
CSS0033146 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 6.3e-16 90.5 58 69.0
EL10Ac2g03383 Beta vulgaris HOM05D000039 ORTHO05D001729 2.2e-13 82.0 71 62.0
arahy.Tifrunner.gnm1.ann1.32AA53 Arachis hypogaea HOM05D003684 ORTHO05D001254 1.9e-12 79.0 47 72.3
Potri.018G145552 Populus trichocarpa HOM05D003684 ORTHO05D004428 7.9e-11 73.6 51 80.4
EL10Ac9g22716 Beta vulgaris HOM05D003684 ORTHO05D004428 7.4e-09 67.0 32 87.5
Ca_09910_v3 Cicer arietinum L. HOM05D003095 ORTHO05D003517 7.4e-09 67.0 79 57.0
Ciclev10003442m.g Citrus clementina HOM05D003684 ORTHO05D004428 9.1e-07 60.1 47 68.1
arahy.Tifrunner.gnm1.ann1.0536J9 Arachis hypogaea HOM05D000340 ORTHO05D000677 1.2e-06 59.7 33 75.8
Ciclev10003579m.g Citrus clementina HOM05D003684 ORTHO05D004428 5.9e-06 57.4 56 55.4


User provided reference genes

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