Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G2029 Fragaria x ananassa HOM05D006943 ORTHO05D008565 4.5e-167 592.0 535 100.0
FvH4_2g36510 Fragaria vesca HOM05D006943 ORTHO05D008565 7.9e-148 528.1 519 96.7
FAN20G3130 Fragaria x ananassa HOM05D006943 ORTHO05D008565 2.4e-128 463.4 530 79.1
FAN15G2754 Fragaria x ananassa HOM05D006943 ORTHO05D008565 1.4e-125 454.1 530 75.8
RcHm_v2.0_Chr6g0305361 Rosa chinensis HOM05D006943 ORTHO05D008565 4.0e-107 392.9 561 67.7
Dinv37491 Davidia involucrata HOM05D006943 ORTHO05D008565 2.8e-44 184.1 184 54.3
QL12p025818 Quercus lobata HOM05D006943 ORTHO05D008565 1.4e-43 181.8 193 52.3
Prupe.1G456500 Prunus persica HOM05D006943 ORTHO05D008565 5.3e-43 179.9 186 56.5
Dinv38807 Davidia involucrata HOM05D006943 ORTHO05D008565 2.9e-41 174.1 184 52.2
Cpa.g.sc148.5 Carica papaya HOM05D006943 ORTHO05D008565 2.1e-39 167.9 172 50.0
Sed0013911 Sechium edule HOM05D006943 ORTHO05D008565 6.0e-39 166.4 172 50.6
ClCG05G026350 Citrullus lanatus HOM05D006943 ORTHO05D008565 6.7e-38 162.9 167 50.3
Haze_21789 Corylus avellana HOM05D006943 ORTHO05D008565 1.9e-37 161.4 161 53.4
MELO3C003604.2 Cucumis melo HOM05D006943 ORTHO05D008565 4.3e-37 160.2 184 49.5
CsaV3_3G047250 Cucumis sativus L. HOM05D006943 ORTHO05D008565 7.4e-37 159.5 160 53.8
TAR636G0756 Trochodendron aralioides HOM05D006943 ORTHO05D008565 1.3e-36 158.7 161 54.7
MD15G1104200 Malus domestica HOM05D006943 ORTHO05D008565 3.7e-36 157.1 519 33.9
Nn5g27072 Nelumbo nucifera HOM05D006943 ORTHO05D008565 4.8e-36 156.8 184 48.4
MD08G1124900 Malus domestica HOM05D006943 ORTHO05D008565 6.2e-36 156.4 188 50.0
CANSAT35G2034 Cannabis sativa HOM05D006943 ORTHO05D008565 8.2e-36 156.0 165 53.3
TWI63G1698 Tripterygium wilfordii HOM05D006943 ORTHO05D008565 1.1e-35 155.6 153 52.3
GSVIVG01035569001 Vitis vinifera HOM05D006943 ORTHO05D008565 2.4e-35 154.5 177 46.9
THA.LOC104803585 Tarenaya hassleriana HOM05D006943 ORTHO05D008565 3.1e-35 154.1 177 48.6
AL7G20800 Arabidopsis lyrata HOM05D006943 ORTHO05D008565 5.3e-35 153.3 168 50.6
CARHR239150 Cardamine hirsuta HOM05D006943 ORTHO05D008565 9.0e-35 152.5 175 47.4
Thhalv10025787m.g Eutrema salsugineum HOM05D006943 ORTHO05D008565 1.5e-34 151.8 161 50.3
AT4G31270 Arabidopsis thaliana HOM05D006943 ORTHO05D008565 2.0e-34 151.4 163 50.3
Eucgr.C02135 Eucalyptus grandis HOM05D006943 ORTHO05D008565 4.5e-34 150.2 158 49.4
Eucgr.L02411 Eucalyptus grandis HOM05D006943 ORTHO05D008565 5.8e-34 149.8 141 51.8
CSS0048200 Camellia sinensis var. sinensis HOM05D006943 ORTHO05D008565 7.6e-34 149.4 154 51.9
Cfa013306 Carpinus fangiana HOM05D006943 ORTHO05D008565 7.6e-34 149.4 168 48.8
Manes.16G137900 Manihot esculenta HOM05D006943 ORTHO05D008565 7.6e-34 149.4 135 53.3
CSS0017346 Camellia sinensis var. sinensis HOM05D006943 ORTHO05D008565 1.0e-33 149.1 151 52.3
Duzib168G0749 Durio zibethinus HOM05D006943 ORTHO05D008565 1.0e-33 149.1 179 46.4
BcaB03g12686 Brassica carinata HOM05D006943 ORTHO05D008565 1.3e-33 148.7 147 50.3
CSS0049214 Camellia sinensis var. sinensis HOM05D006943 ORTHO05D008565 1.7e-33 148.3 140 53.6
Sc06g0001270 Simmondsia chinensis HOM05D006943 ORTHO05D008565 1.7e-33 148.3 157 51.0
Aa31LG2G19090 Aethionema arabicum HOM05D006943 ORTHO05D008565 1.1e-32 145.6 173 47.4
Carub.0007s0929 Capsella rubella HOM05D006943 ORTHO05D008565 1.9e-32 144.8 173 46.8
BcaC01g01105 Brassica carinata HOM05D006943 ORTHO05D008565 7.1e-32 142.9 167 47.3
A08p18750 Brassica napus HOM05D006943 ORTHO05D008565 7.1e-32 142.9 167 47.3
C03p88130 Brassica napus HOM05D006943 ORTHO05D008565 7.1e-32 142.9 167 47.3
BolC3t21121H Brassica oleracea HOM05D006943 ORTHO05D008565 1.2e-31 142.1 169 46.2
BraA08t33836Z Brassica rapa HOM05D006943 ORTHO05D008565 1.2e-31 142.1 169 46.2
Sp7g29130 Schrenkiella parvula HOM05D006943 ORTHO05D008565 2.1e-31 141.4 163 48.5
Actinidia25739 Actinidia chinensis HOM05D006943 ORTHO05D008565 2.7e-31 141.0 190 42.6
Hund03260 Selenicereus undatus HOM05D006943 ORTHO05D008565 2.7e-31 141.0 158 46.8
Potri.006G279100 Populus trichocarpa HOM05D006943 ORTHO05D008565 1.0e-30 139.0 129 48.1
EL10Ac2g03684 Beta vulgaris HOM05D006943 ORTHO05D008565 3.0e-30 137.5 164 48.2
Potri.018G002801 Populus trichocarpa HOM05D006943 ORTHO05D008565 6.7e-30 136.3 169 44.4
arahy.Tifrunner.gnm1.ann1.HML22G Arachis hypogaea HOM05D006943 ORTHO05D008565 3.3e-29 134.0 189 41.3
Lalb_Chr22g0361191 Lupinus albus HOM05D006943 ORTHO05D008565 5.7e-29 133.3 183 42.6
AUR62038724 Chenopodium quinoa HOM05D006943 ORTHO05D008565 1.6e-28 131.7 164 45.7
AUR62043827 Chenopodium quinoa HOM05D006943 ORTHO05D008565 1.6e-28 131.7 164 45.7
AUR62020649 Chenopodium quinoa HOM05D006943 ORTHO05D008565 2.2e-28 131.3 164 45.1
arahy.Tifrunner.gnm1.ann1.X8DLDE Arachis hypogaea HOM05D006943 ORTHO05D008565 4.8e-28 130.2 189 40.7
Atru.chr7.2692 Acer truncatum HOM05D006943 ORTHO05D008565 1.4e-27 128.6 167 46.1
Ciclev10009072m.g Citrus clementina HOM05D006943 ORTHO05D008565 3.4e-26 124.0 170 44.7
Ah.11g044140 Amaranthus hybridus HOM05D006943 ORTHO05D008565 5.9e-26 123.2 166 43.4
Nitab4.5_0001942g0070 Nicotiana tabacum HOM05D006943 ORTHO05D008565 1.7e-25 121.7 180 38.9
MBI16_g00837_MAGBIO Magnolia biondii HOM05D006943 ORTHO05D008565 2.2e-25 121.3 175 43.4
Cc10_g14290 Coffea canephora HOM05D006943 ORTHO05D008565 3.8e-25 120.6 156 41.0
Solyc08g069160.3 Solanum lycopersicum HOM05D006943 ORTHO05D008565 3.8e-25 120.6 176 36.9
Sopen08g022790 Solanum pennellii HOM05D006943 ORTHO05D008565 3.8e-25 120.6 176 36.9
PGSC0003DMG400029553 Solanum tuberosum HOM05D006943 ORTHO05D008565 3.8e-25 120.6 176 36.9
Aqoxy7G02511 Aquilegia oxysepala HOM05D006943 ORTHO05D008565 8.5e-25 119.4 165 39.4
Glyma.17G194700 Glycine max HOM05D006943 ORTHO05D008565 1.1e-24 119.0 170 42.9
Lsat_1_v5_gn_3_68681 Lactuca sativa HOM05D006943 ORTHO05D008565 1.6e-23 115.2 175 42.9
HPP92_021992 Vanilla planifolia HOM05D006943 ORTHO05D008565 2.1e-23 114.8 172 40.7
Peaxi162Scf00213g00939 Petunia axillaris HOM05D006943 ORTHO05D008565 4.6e-23 113.6 176 36.4
Nitab4.5_0005058g0010 Nicotiana tabacum HOM05D006943 ORTHO05D008565 6.1e-23 113.2 172 37.8
CAN.G480.10 Capsicum annuum HOM05D006943 ORTHO05D008565 7.9e-23 112.8 170 35.9
TPR.G11968 Trifolium pratense HOM05D006943 ORTHO05D008565 7.9e-23 112.8 164 45.1
Lj5g0018295 Lotus japonicus HOM05D006943 ORTHO05D008565 1.4e-22 112.1 196 39.3
PSO170G5679 Papaver somniferum HOM05D006943 ORTHO05D008565 1.4e-22 112.1 197 38.1
Lsat_1_v5_gn_5_56401 Lactuca sativa HOM05D006943 ORTHO05D008565 1.8e-22 111.7 128 48.4
PSO063G4511 Papaver somniferum HOM05D006943 ORTHO05D008565 5.1e-22 110.2 197 37.6
COL.COLO4_18631 Corchorus olitorius HOM05D006943 ORTHO05D008565 8.8e-22 109.4 178 38.8
ECA246G0365 Erigeron canadensis HOM05D006943 ORTHO05D008565 3.3e-21 107.5 144 43.1
Glyma.14G138000 Glycine max HOM05D006943 ORTHO05D008565 3.3e-21 107.5 170 42.4
HanXRQChr17g0539241 Helianthus annuus HOM05D006943 ORTHO05D008565 3.3e-21 107.5 138 45.7
Ca_01518_v3 Cicer arietinum L. HOM05D006943 ORTHO05D008565 1.3e-20 105.5 170 41.2
Phvul.001G077900 Phaseolus vulgaris HOM05D006943 ORTHO05D008565 1.3e-20 105.5 156 42.9
CDE02G0425 Ceratophyllum demersum HOM05D006943 ORTHO05D008565 2.8e-20 104.4 174 35.6
Psat6g033160 Pisum sativum HOM05D006943 ORTHO05D008565 2.8e-20 104.4 146 41.1
ECA240G4190 Erigeron canadensis HOM05D006943 ORTHO05D008565 3.7e-20 104.0 86 55.8
HanXRQChr03g0081291 Helianthus annuus HOM05D006943 ORTHO05D008565 3.7e-20 104.0 173 39.9
VMungo0647G1044 Vigna mungo HOM05D006943 ORTHO05D008565 3.7e-20 104.0 153 43.8
CSS0045137 Camellia sinensis var. sinensis HOM05D006943 ORTHO05D008565 4.8e-20 103.6 171 43.3
Medtr1g009220 Medicago truncatula HOM05D006943 ORTHO05D008565 1.1e-19 102.4 172 39.5
ATR0626G281 Amborella trichopoda HOM05D006943 ORTHO05D008565 2.0e-18 98.2 141 40.4
Os02g0174300 Oryza sativa ssp. japonica HOM05D006943 ORTHO05D008565 7.7e-18 96.3 125 39.2
Oeu008780.1 Olea europaea HOM05D006943 ORTHO05D008565 1.3e-17 95.5 159 38.4
Zm00001eb233350 Zea mays HOM05D006943 ORTHO05D008565 2.9e-17 94.4 131 38.2
DCAR_004562 Daucus carota HOM05D006943 ORTHO05D008565 5.0e-17 93.6 167 36.5
MSTRG.13940 Avicennia marina HOM05D006943 ORTHO05D008565 1.4e-16 92.0 78 53.8
MSTRG.13929 Avicennia marina HOM05D006943 ORTHO05D008565 1.2e-15 89.0 76 53.9
Atru.chr6.219 Acer truncatum HOM05D006943 ORTHO05D008565 2.7e-15 87.8 67 59.7
Migut.E01408 Erythranthe guttata HOM05D006943 ORTHO05D008565 4.7e-15 87.0 84 50.0
Migut.E01420 Erythranthe guttata HOM05D006943 ORTHO05D008565 4.7e-15 87.0 84 50.0
Actinidia03335 Actinidia chinensis HOM05D006943 ORTHO05D008565 8.8e-14 82.8 58 65.5
SalBow8G0710 Salvia bowleyana HOM05D006943 ORTHO05D008565 2.2e-12 78.2 174 31.6
CSS0031863 Camellia sinensis var. sinensis HOM05D006943 ORTHO05D008565 2.8e-12 77.8 171 37.4
Mapoly0001s0020 Marchantia polymorpha HOM05D002537 ORTHO05D002751 1.2e-10 72.4 164 26.8
Atru.chr6.1911 Acer truncatum HOM05D002537 ORTHO05D002751 5.9e-10 70.1 127 33.1
Prupe.5G142400 Prunus persica HOM05D002537 ORTHO05D002751 2.2e-09 68.2 127 30.7
FvH4_5g09440 Fragaria vesca HOM05D002537 ORTHO05D002751 3.8e-09 67.4 129 30.2
FAN18G1947 Fragaria x ananassa HOM05D002537 ORTHO05D002751 3.8e-09 67.4 129 30.2
Lalb_Chr12g0202491 Lupinus albus HOM05D002537 ORTHO05D002751 3.8e-09 67.4 135 29.6
Pp3c4_22830 Physcomitrium patens HOM05D002537 ORTHO05D002751 3.8e-09 67.4 153 32.7
Pp3c4_22880 Physcomitrium patens HOM05D002537 ORTHO05D002751 3.8e-09 67.4 153 32.7
FAN13G0340 Fragaria x ananassa HOM05D002537 ORTHO05D002751 5.0e-09 67.0 131 30.5
Mapoly0056s0059 Marchantia polymorpha HOM05D002537 ORTHO05D002751 6.5e-09 66.6 112 31.2
Ciclev10033491m.g Citrus clementina HOM05D002537 ORTHO05D002751 1.1e-08 65.9 161 28.6
FAN04G1977 Fragaria x ananassa HOM05D002537 ORTHO05D002751 1.1e-08 65.9 129 29.5
Phvul.002G281800 Phaseolus vulgaris HOM05D002537 ORTHO05D002751 1.1e-08 65.9 125 31.2
VMungo0251G0975 Vigna mungo HOM05D002537 ORTHO05D002751 1.1e-08 65.9 132 29.5
FAN08G1434 Fragaria x ananassa HOM05D002537 ORTHO05D002751 1.9e-08 65.1 130 29.2
Lsat_1_v5_gn_5_10240 Lactuca sativa HOM05D002537 ORTHO05D002751 1.9e-08 65.1 122 32.8
Pp3c26_2600 Physcomitrium patens HOM05D002537 ORTHO05D002751 1.9e-08 65.1 143 30.8
Pp3c26_2630 Physcomitrium patens HOM05D002537 ORTHO05D002751 1.9e-08 65.1 143 30.8
Thecc.09G002300 Theobroma cacao HOM05D006943 ORTHO05D008565 1.9e-08 65.1 61 54.1
Zm00001eb421380 Zea mays HOM05D002537 ORTHO05D002751 1.9e-08 65.1 131 31.3
QL10p000562 Quercus lobata HOM05D002537 ORTHO05D002751 2.5e-08 64.7 172 29.1
MD06G1131400 Malus domestica HOM05D002537 ORTHO05D002751 4.2e-08 63.9 142 27.5
Medtr8g100130 Medicago truncatula HOM05D002537 ORTHO05D002751 4.2e-08 63.9 136 27.9
Hma1.2p1_0577F.1_g182310 Hydrangea macrophylla HOM05D002537 ORTHO05D002751 5.5e-08 63.5 136 28.7
Lalb_Chr07g0183801 Lupinus albus HOM05D002537 ORTHO05D002751 5.5e-08 63.5 135 27.4
VMungo0720G0266 Vigna mungo HOM05D006943 ORTHO05D008565 5.5e-08 63.5 140 33.6
Ah.02g114620 Amaranthus hybridus HOM05D002537 ORTHO05D002751 7.2e-08 63.2 134 32.1
Thecc.03G139900 Theobroma cacao HOM05D002537 ORTHO05D002751 9.4e-08 62.8 122 29.5
ECA246G2368 Erigeron canadensis HOM05D002537 ORTHO05D002751 1.2e-07 62.4 122 32.0
Zm00001eb084860 Zea mays HOM05D002537 ORTHO05D002751 1.2e-07 62.4 138 29.0
HanXRQChr05g0155411 Helianthus annuus HOM05D002537 ORTHO05D002751 1.6e-07 62.0 156 30.1
Hund02506 Selenicereus undatus HOM05D002537 ORTHO05D002751 1.6e-07 62.0 149 27.5
RcHm_v2.0_Chr7g0188751 Rosa chinensis HOM05D002537 ORTHO05D002751 2.1e-07 61.6 142 26.8
Glyma.08G007800 Glycine max HOM05D002537 ORTHO05D002751 2.7e-07 61.2 141 28.4
Peaxi162Scf00314g00642 Petunia axillaris HOM05D002537 ORTHO05D002751 2.7e-07 61.2 153 28.8
Psat7g039360 Pisum sativum HOM05D002537 ORTHO05D002751 2.7e-07 61.2 178 27.5
SMO351G0173 Selaginella moellendorffii HOM05D002537 ORTHO05D002751 2.7e-07 61.2 112 25.0
CAN.G843.13 Capsicum annuum HOM05D002537 ORTHO05D002751 3.6e-07 60.8 113 30.1
Cc00_g33880 Coffea canephora HOM05D002537 ORTHO05D002751 3.6e-07 60.8 187 29.9
Glyma.05G200400 Glycine max HOM05D002537 ORTHO05D002751 3.6e-07 60.8 126 28.6
SMO367G0451 Selaginella moellendorffii HOM05D003725 ORTHO05D004294 3.6e-07 60.8 122 31.1
AagrBONN_evm.TU.Sc2ySwM_228.3565 Anthoceros agrestis HOM05D002537 ORTHO05D002751 6.1e-07 60.1 81 35.8
DCAR_021402 Daucus carota HOM05D002537 ORTHO05D002751 6.1e-07 60.1 178 31.5
Lj9C486T16 Lonicera japonica HOM05D002537 ORTHO05D002751 6.1e-07 60.1 149 26.8
GSVIVG01008644001 Vitis vinifera HOM05D002537 ORTHO05D002751 6.1e-07 60.1 115 29.6
Cc00_g33380 Coffea canephora HOM05D002537 ORTHO05D002751 8.0e-07 59.7 187 29.4
Dinv23220 Davidia involucrata HOM05D002537 ORTHO05D002751 8.0e-07 59.7 147 25.9
TPR.G40627 Trifolium pratense HOM05D002537 ORTHO05D002751 8.0e-07 59.7 130 26.9
AUR62009533 Chenopodium quinoa HOM05D002537 ORTHO05D002751 1.4e-06 58.9 92 37.0
Pp3c15_4190 Physcomitrium patens HOM05D002537 ORTHO05D002751 1.4e-06 58.9 156 23.7
Ca_16813_v3 Cicer arietinum L. HOM05D002537 ORTHO05D002751 3.0e-06 57.8 190 25.3
Mapoly0003s0164 Marchantia polymorpha HOM05D003725 ORTHO05D004294 3.9e-06 57.4 121 28.9
Nitab4.5_0010249g0020 Nicotiana tabacum HOM05D002537 ORTHO05D002751 3.9e-06 57.4 142 28.2
Pp3c12_22800 Physcomitrium patens HOM05D002537 ORTHO05D002751 3.9e-06 57.4 140 27.1
HanXRQChr16g0529331 Helianthus annuus HOM05D002537 ORTHO05D002751 5.2e-06 57.0 153 28.1
Lj4g0017089 Lotus japonicus HOM05D002537 ORTHO05D002751 5.2e-06 57.0 129 25.6
Potri.015G105800 Populus trichocarpa HOM05D002537 ORTHO05D002751 5.2e-06 57.0 115 27.8
Cpa.g.sc2.95 Carica papaya HOM05D003725 ORTHO05D004294 6.7e-06 56.6 115 32.2
CBR_g51499 Chara braunii HOM05D000601 ORTHO05D000407 6.7e-06 56.6 103 26.2
Duzib084G0396 Durio zibethinus HOM05D002537 ORTHO05D002751 6.7e-06 56.6 143 28.0
Lalb_Chr13g0296971 Lupinus albus HOM05D002537 ORTHO05D002751 6.7e-06 56.6 123 27.6
PGSC0003DMG400014176 Solanum tuberosum HOM05D002537 ORTHO05D002751 6.7e-06 56.6 156 26.9


User provided reference genes

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