Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G1710 Fragaria x ananassa HOM05D006697 ORTHO05D008161 2.7e-132 475.3 239 100.0
FvH4_2g00851 Fragaria vesca HOM05D006697 ORTHO05D008161 3.4e-127 458.4 239 96.2
RcHm_v2.0_Chr6g0251241 Rosa chinensis HOM05D006697 ORTHO05D008161 2.5e-122 442.2 239 91.2
FAN20G2680 Fragaria x ananassa HOM05D006697 ORTHO05D008161 1.2e-116 423.3 221 95.5
QL09p001838 Quercus lobata HOM05D006697 ORTHO05D008161 1.1e-93 347.1 238 71.4
QL11p001773 Quercus lobata HOM05D006697 ORTHO05D008161 7.2e-93 344.4 238 71.0
MD05G1004600 Malus domestica HOM05D006697 ORTHO05D008161 4.0e-91 338.6 235 72.3
CiPaw.04G009300 Carya illinoinensis HOM05D006697 ORTHO05D008161 1.5e-90 336.7 228 71.5
Potri.001G377100 Populus trichocarpa HOM05D006697 ORTHO05D008161 1.3e-89 333.6 237 69.2
TWI12G1402 Tripterygium wilfordii HOM05D006697 ORTHO05D008161 2.0e-87 326.2 234 67.1
GSVIVG01036291001 Vitis vinifera HOM05D006697 ORTHO05D008161 2.7e-87 325.9 221 70.1
CANSAT21G1464 Cannabis sativa HOM05D006697 ORTHO05D008161 3.5e-87 325.5 228 69.3
CANSAT21G1945 Cannabis sativa HOM05D006697 ORTHO05D008161 3.5e-87 325.5 228 69.3
Hma1.2p1_0417F.1_g148910 Hydrangea macrophylla HOM05D006697 ORTHO05D008161 3.5e-87 325.5 223 70.4
AUR62013379 Chenopodium quinoa HOM05D006697 ORTHO05D008161 5.9e-87 324.7 228 67.5
AUR62038532 Chenopodium quinoa HOM05D006697 ORTHO05D008161 1.7e-86 323.2 228 67.5
Dinv22109 Davidia involucrata HOM05D006697 ORTHO05D008161 6.5e-86 321.2 228 68.0
Lj5C630T5 Lonicera japonica HOM05D006697 ORTHO05D008161 1.1e-85 320.5 224 68.3
EL10Ac1g01267 Beta vulgaris HOM05D006697 ORTHO05D008161 1.9e-85 319.7 226 66.8
Ah.05g170350 Amaranthus hybridus HOM05D006697 ORTHO05D008161 3.3e-85 318.9 229 66.8
Aqoxy7G01951 Aquilegia oxysepala HOM05D006697 ORTHO05D008161 3.3e-85 318.9 228 68.4
Sabra16G0248400 Salix brachista HOM05D006697 ORTHO05D008161 7.2e-85 317.8 249 65.1
Sed0014406 Sechium edule HOM05D006697 ORTHO05D008161 9.5e-85 317.4 231 66.7
MBI04_g46123_MAGBIO Magnolia biondii HOM05D006697 ORTHO05D008161 1.6e-84 316.6 229 67.7
Duzib213G0772 Durio zibethinus HOM05D006697 ORTHO05D008161 3.6e-84 315.5 226 69.0
Sc23g0000070 Simmondsia chinensis HOM05D006697 ORTHO05D008161 4.7e-84 315.1 226 66.4
Ciclev10024137m.g Citrus clementina HOM05D006697 ORTHO05D008161 8.0e-84 314.3 221 67.9
Migut.C01379 Erythranthe guttata HOM05D006697 ORTHO05D008161 8.0e-84 314.3 225 64.9
COL.COLO4_05203 Corchorus olitorius HOM05D006697 ORTHO05D008161 1.4e-83 313.5 241 64.7
Atru.chr13.2506 Acer truncatum HOM05D006697 ORTHO05D008161 1.8e-83 313.2 237 63.7
CsaV3_2G033200 Cucumis sativus L. HOM05D006697 ORTHO05D008161 1.8e-83 313.2 235 63.4
HanXRQChr08g0227531 Helianthus annuus HOM05D006697 ORTHO05D008161 4.0e-83 312.0 230 65.2
SGA_v2.0_scaffold24G10647 Striga asiatica HOM05D006697 ORTHO05D008161 4.0e-83 312.0 225 66.2
Atru.chr13.2494 Acer truncatum HOM05D006697 ORTHO05D008161 5.2e-83 311.6 237 63.3
Actinidia03526 Actinidia chinensis HOM05D006697 ORTHO05D008161 6.8e-83 311.2 234 66.7
TPR.G29429 Trifolium pratense HOM05D006697 ORTHO05D008161 8.9e-83 310.8 241 64.3
Lj7A235T22 Lonicera japonica HOM05D006697 ORTHO05D008161 2.6e-82 309.3 221 67.0
Thecc.08G178500 Theobroma cacao HOM05D006697 ORTHO05D008161 4.4e-82 308.5 243 63.8
Gorai.009G352800 Gossypium raimondii HOM05D006697 ORTHO05D008161 5.7e-82 308.1 228 67.1
PGR044G1078 Punica granatum HOM05D006697 ORTHO05D008161 5.7e-82 308.1 225 66.7
ClCG11G008450 Citrullus lanatus HOM05D006697 ORTHO05D008161 7.5e-82 307.8 227 63.9
Gohir.D05G329400 Gossypium hirsutum HOM05D006697 ORTHO05D008161 7.5e-82 307.8 228 67.1
Cc10_g08640 Coffea canephora HOM05D006697 ORTHO05D008161 9.8e-82 307.4 221 67.9
Glyma.11G110500 Glycine max HOM05D006697 ORTHO05D008161 1.7e-81 306.6 229 65.9
VMungo1127G1290 Vigna mungo HOM05D006697 ORTHO05D008161 8.3e-81 304.3 241 63.5
Haze_13956 Corylus avellana HOM05D006697 ORTHO05D008161 5.4e-80 301.6 219 68.5
Medtr2g010410 Medicago truncatula HOM05D006697 ORTHO05D008161 5.4e-80 301.6 228 64.5
Phvul.011G017400 Phaseolus vulgaris HOM05D006697 ORTHO05D008161 5.4e-80 301.6 241 62.7
Ca_26167_v3 Cicer arietinum L. HOM05D006697 ORTHO05D008161 7.0e-80 301.2 225 66.2
Prupe.8G007100 Prunus persica HOM05D006697 ORTHO05D008161 7.0e-80 301.2 241 66.0
PGR044G1872 Punica granatum HOM05D006697 ORTHO05D008161 1.2e-79 300.4 225 65.3
Cpa.g.sc21.84 Carica papaya HOM05D006697 ORTHO05D008161 2.7e-79 299.3 227 63.0
Aa31LG2G660 Aethionema arabicum HOM05D006697 ORTHO05D008161 5.9e-79 298.1 236 62.7
Psat1g020920 Pisum sativum HOM05D006697 ORTHO05D008161 5.9e-79 298.1 228 63.6
Thhalv10008579m.g Eutrema salsugineum HOM05D006697 ORTHO05D008161 7.8e-79 297.7 239 61.1
THA.LOC104814608 Tarenaya hassleriana HOM05D006697 ORTHO05D008161 1.3e-78 297.0 227 64.3
arahy.Tifrunner.gnm1.ann1.6HI5DG Arachis hypogaea HOM05D006697 ORTHO05D008161 1.7e-78 296.6 234 63.7
arahy.Tifrunner.gnm1.ann1.L3LJ1W Arachis hypogaea HOM05D006697 ORTHO05D008161 1.7e-78 296.6 234 64.1
arahy.Tifrunner.gnm1.ann1.D2QDKL Arachis hypogaea HOM05D006697 ORTHO05D008161 3.8e-78 295.4 238 62.2
AT1G12790 Arabidopsis thaliana HOM05D006697 ORTHO05D008161 6.6e-78 294.7 227 63.9
Lj3g0000289 Lotus japonicus HOM05D006697 ORTHO05D008161 8.6e-78 294.3 238 63.4
Sopen06g023040 Solanum pennellii HOM05D006697 ORTHO05D008161 8.6e-78 294.3 226 61.1
vmacro17835 Vaccinium macrocarpon HOM05D006697 ORTHO05D008161 3.3e-77 292.4 236 63.6
Peaxi162Scf00818g00536 Petunia axillaris HOM05D006697 ORTHO05D008161 4.3e-77 292.0 224 62.9
AL1G24400 Arabidopsis lyrata HOM05D006697 ORTHO05D008161 5.6e-77 291.6 227 63.0
PGSC0003DMG400033140 Solanum tuberosum HOM05D006697 ORTHO05D008161 5.6e-77 291.6 226 60.6
Sp1g11350 Schrenkiella parvula HOM05D006697 ORTHO05D008161 7.3e-77 291.2 239 60.7
CARHR013100 Cardamine hirsuta HOM05D006697 ORTHO05D008161 9.5e-77 290.8 229 62.0
Os05g0588200 Oryza sativa ssp. japonica HOM05D006697 ORTHO05D008161 2.8e-76 289.3 232 62.5
SalBow7G2072 Salvia bowleyana HOM05D006697 ORTHO05D008161 2.8e-76 289.3 286 52.8
Solyc06g064560.4 Solanum lycopersicum HOM05D006697 ORTHO05D008161 2.8e-76 289.3 226 61.1
PSO170G3180 Papaver somniferum HOM05D006697 ORTHO05D008161 3.6e-76 288.9 238 60.1
Carub.0001s1251 Capsella rubella HOM05D006697 ORTHO05D008161 6.1e-76 288.1 227 61.7
Manes.02G201500 Manihot esculenta HOM05D006697 ORTHO05D008161 5.2e-75 285.0 237 62.0
vmacro14431 Vaccinium macrocarpon HOM05D006697 ORTHO05D008161 7.5e-74 281.2 260 58.1
MD05G1003900 Malus domestica HOM05D006697 ORTHO05D008161 1.7e-73 280.0 193 69.9
Hund16916 Selenicereus undatus HOM05D006697 ORTHO05D008161 8.3e-73 277.7 227 62.1
CAN.G14.56 Capsicum annuum HOM05D006697 ORTHO05D008161 4.1e-72 275.4 221 60.6
ECA247G0072 Erigeron canadensis HOM05D006697 ORTHO05D008161 2.0e-71 273.1 219 62.1
Nn8g39331 Nelumbo nucifera HOM05D006697 ORTHO05D008161 6.0e-71 271.6 225 59.6
SGA_v2.0_scaffold147G36299 Striga asiatica HOM05D006697 ORTHO05D008161 5.0e-70 268.5 228 58.3
HPP92_021529 Vanilla planifolia HOM05D006697 ORTHO05D008161 6.6e-70 268.1 229 57.2
A06p08910 Brassica napus HOM05D000776 ORTHO05D008161 1.9e-69 266.5 222 58.6
HPP92_021490 Vanilla planifolia HOM05D006697 ORTHO05D008161 2.5e-69 266.2 229 57.2
BraA06t24084Z Brassica rapa HOM05D000776 ORTHO05D008161 7.3e-69 264.6 222 58.6
Zm00001eb345090 Zea mays HOM05D006697 ORTHO05D008161 2.3e-67 259.6 224 57.6
Nitab4.5_0002654g0040 Nicotiana tabacum HOM05D006697 ORTHO05D008161 6.8e-67 258.1 244 54.9
Lj7C240T16 Lonicera japonica HOM05D006697 ORTHO05D008161 1.7e-65 253.4 222 59.5
BcaC05g25157 Brassica carinata HOM05D000776 ORTHO05D008161 3.7e-65 252.3 225 58.7
C05p10520 Brassica napus HOM05D000776 ORTHO05D008161 3.7e-65 252.3 225 58.7
TAR625G0361 Trochodendron aralioides HOM05D006697 ORTHO05D008161 7.0e-64 248.1 205 61.0
BolC5t29798H Brassica oleracea HOM05D000776 ORTHO05D008161 9.2e-64 247.7 229 57.6
BcaC05g25114 Brassica carinata HOM05D006697 ORTHO05D008161 3.9e-62 242.3 226 56.6
Glyma.12G014500 Glycine max HOM05D006697 ORTHO05D008161 7.3e-61 238.0 183 62.3
Rhsim08G0116200 Rhododendron simsii HOM05D006697 ORTHO05D008161 1.6e-60 236.9 261 52.1
DCAR_016528 Daucus carota HOM05D006697 ORTHO05D008161 1.1e-59 234.2 179 60.3
CAN.G27.3 Capsicum annuum HOM05D006697 ORTHO05D008161 5.2e-59 231.9 197 57.9
CSS0025148 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 3.4e-58 229.2 217 59.9
CSS0011722 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 1.7e-57 226.9 216 58.8
Nitab4.5_0010319g0040 Nicotiana tabacum HOM05D006697 ORTHO05D008161 1.9e-56 223.4 241 49.8
SHI16724 Sapria himalayana HOM05D006697 ORTHO05D008161 3.0e-54 216.1 282 46.1
ATR0083G058 Amborella trichopoda HOM05D006697 ORTHO05D008161 4.7e-52 208.8 183 55.7
Eucgr.F04072 Eucalyptus grandis HOM05D006697 ORTHO05D008161 4.0e-51 205.7 159 62.3
Lsat_1_v5_gn_1_24901 Lactuca sativa HOM05D006697 ORTHO05D008161 3.8e-49 199.1 152 63.2
Gohir.A05G328400 Gossypium hirsutum HOM05D006697 ORTHO05D008161 4.9e-49 198.7 152 61.8
Lalb_Chr01g0000751 Lupinus albus HOM05D006697 ORTHO05D008161 2.1e-47 193.4 146 64.4
arahy.Tifrunner.gnm1.ann1.3DZ399 Arachis hypogaea HOM05D006697 ORTHO05D008161 6.6e-46 188.3 238 48.3
MELO3C029791.2 Cucumis melo HOM05D006697 ORTHO05D008161 2.5e-45 186.4 165 57.6
arahy.Tifrunner.gnm1.ann1.9U8FPX Arachis hypogaea HOM05D006697 ORTHO05D008161 1.2e-44 184.1 218 50.0
unitig_32.g11211 Utricularia gibba HOM05D006697 ORTHO05D008161 4.0e-43 179.1 122 68.0
MSTRG.1598 Avicennia marina HOM05D006697 ORTHO05D008161 1.2e-42 177.6 121 66.9
arahy.Tifrunner.gnm1.ann1.K2UT7U Arachis hypogaea HOM05D006697 ORTHO05D008161 4.3e-37 159.1 119 63.9
RcHm_v2.0_Chr6g0275321 Rosa chinensis HOM05D006697 ORTHO05D008161 6.2e-36 155.2 106 75.5
unitig_32.g11220 Utricularia gibba HOM05D000486 ORTHO05D000375 5.3e-35 152.1 107 65.4
SMO119G0513 Selaginella moellendorffii HOM05D006697 ORTHO05D008161 2.0e-34 150.2 218 36.7
arahy.Tifrunner.gnm1.ann1.GZG3VH Arachis hypogaea HOM05D006697 ORTHO05D008161 2.4e-32 143.3 151 50.3
AL1G24230 Arabidopsis lyrata HOM05D006697 ORTHO05D008161 3.0e-30 136.3 132 56.1
Mapoly0068s0032 Marchantia polymorpha HOM05D006697 ORTHO05D008161 1.9e-24 117.1 225 29.8
Lalb_Chr01g0000761 Lupinus albus HOM05D006697 ORTHO05D008161 4.8e-20 102.4 79 63.3
FAN20G1527 Fragaria x ananassa HOM05D006697 ORTHO05D205377 3.2e-16 89.7 76 67.1
arahy.Tifrunner.gnm1.ann1.D8HQTE Arachis hypogaea HOM05D006697 ORTHO05D008161 6.7e-14 82.0 62 64.5
Medtr2g451120 Medicago truncatula HOM05D006697 ORTHO05D008161 3.4e-10 69.7 88 44.3
Lj7A241T18 Lonicera japonica HOM05D006697 ORTHO05D008161 2.1e-07 60.5 43 55.8
FAN20G1409 Fragaria x ananassa HOM05D006697 ORTHO05D206840 1.4e-06 57.8 72 52.8


User provided reference genes

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