Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G0843 Fragaria x ananassa HOM05D005066 ORTHO05D006138 4.6e-241 837.4 404 100.0
FAN20G0881 Fragaria x ananassa HOM05D005066 ORTHO05D006138 1.3e-195 686.4 357 93.3
FAN15G0307 Fragaria x ananassa HOM05D005066 ORTHO05D006138 1.4e-194 682.9 357 92.7
FvH4_2g37550 Fragaria vesca HOM05D005066 ORTHO05D006138 4.2e-194 681.4 357 92.7
RcHm_v2.0_Chr6g0304181 Rosa chinensis HOM05D005066 ORTHO05D006138 1.7e-187 659.4 357 89.9
Prupe.1G355000 Prunus persica HOM05D005066 ORTHO05D006138 1.4e-173 613.2 358 82.7
MD15G1002700 Malus domestica HOM05D005066 ORTHO05D006138 4.7e-169 598.2 358 81.3
Cfa014063 Carpinus fangiana HOM05D005066 ORTHO05D006138 1.8e-165 586.3 358 77.7
CiPaw.07G139500 Carya illinoinensis HOM05D005066 ORTHO05D006138 1.1e-162 577.0 358 76.5
MD08G1003000 Malus domestica HOM05D005066 ORTHO05D006138 2.1e-161 572.8 358 78.2
Duzib093G2109 Durio zibethinus HOM05D005066 ORTHO05D006138 2.8e-161 572.4 358 75.1
Cpa.g.sc26.207 Carica papaya HOM05D005066 ORTHO05D006138 1.4e-160 570.1 358 74.9
Dinv31933 Davidia involucrata HOM05D005066 ORTHO05D006138 2.3e-160 569.3 358 75.7
TWI36G1160 Tripterygium wilfordii HOM05D005066 ORTHO05D006138 2.3e-160 569.3 359 76.0
AT1G20540 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 5.2e-160 568.2 358 74.3
Gorai.009G267800 Gossypium raimondii HOM05D005066 ORTHO05D006138 5.2e-160 568.2 365 73.7
AL1G33470 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 3.4e-159 565.5 358 73.7
Lalb_Chr23g0265821 Lupinus albus HOM05D005066 ORTHO05D006138 3.4e-159 565.5 358 75.1
Manes.18G005800 Manihot esculenta HOM05D005066 ORTHO05D006138 3.4e-159 565.5 358 75.4
Potri.005G249800 Populus trichocarpa HOM05D005066 ORTHO05D006138 4.4e-159 565.1 358 74.6
Thecc.08G057800 Theobroma cacao HOM05D005066 ORTHO05D006138 4.4e-159 565.1 358 74.3
GSVIVG01008680001 Vitis vinifera HOM05D005066 ORTHO05D006138 4.4e-159 565.1 358 75.1
Ca_15439_v3 Cicer arietinum L. HOM05D005066 ORTHO05D006138 2.9e-158 562.4 358 74.3
Gohir.A05G254700 Gossypium hirsutum HOM05D005066 ORTHO05D006138 2.9e-158 562.4 358 74.0
CANSAT25G3513 Cannabis sativa HOM05D005066 ORTHO05D006138 8.3e-158 560.8 359 74.1
Actinidia37971 Actinidia chinensis HOM05D005066 ORTHO05D006138 1.4e-157 560.1 358 75.1
Hma1.2p1_0507F.1_g168410 Hydrangea macrophylla HOM05D005066 ORTHO05D006138 2.4e-157 559.3 358 73.7
VMungo1309G2329 Vigna mungo HOM05D005066 ORTHO05D006138 9.2e-157 557.4 358 74.6
Lj1g0027661 Lotus japonicus HOM05D005066 ORTHO05D006138 1.2e-156 557.0 358 74.3
arahy.Tifrunner.gnm1.ann1.B8YF15 Arachis hypogaea HOM05D005066 ORTHO05D006138 1.6e-156 556.6 360 73.6
CSS0029951 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 1.6e-156 556.6 358 74.6
THA.LOC104813757 Tarenaya hassleriana HOM05D005066 ORTHO05D006138 1.6e-156 556.6 358 73.2
TPR.G38213 Trifolium pratense HOM05D005066 ORTHO05D006138 3.5e-156 555.4 358 74.0
Eucgr.F03549 Eucalyptus grandis HOM05D005066 ORTHO05D006138 1.0e-155 553.9 358 70.9
Thhalv10008062m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 1.0e-155 553.9 358 72.6
Carub.0001s2001 Capsella rubella HOM05D005066 ORTHO05D006138 1.7e-155 553.1 358 72.1
arahy.Tifrunner.gnm1.ann1.76XKSK Arachis hypogaea HOM05D005066 ORTHO05D006138 3.0e-155 552.4 357 73.7
A06p16540 Brassica napus HOM05D005066 ORTHO05D006138 6.6e-155 551.2 358 72.3
BraA06t24760Z Brassica rapa HOM05D005066 ORTHO05D006138 6.6e-155 551.2 358 72.3
Aa31LG7G4800 Aethionema arabicum HOM05D005066 ORTHO05D006138 8.6e-155 550.8 357 72.5
Phvul.009G010100 Phaseolus vulgaris HOM05D005066 ORTHO05D006138 8.6e-155 550.8 358 73.2
Oeu011330.2 Olea europaea HOM05D005066 ORTHO05D006138 1.1e-154 550.4 358 71.8
BcaB07g32052 Brassica carinata HOM05D005066 ORTHO05D006138 1.9e-154 549.7 358 72.6
PGR031G0259 Punica granatum HOM05D005066 ORTHO05D006138 2.5e-154 549.3 358 72.1
Glyma.06G018800 Glycine max HOM05D005066 ORTHO05D006138 4.3e-154 548.5 358 73.2
Ciclev10001617m.g Citrus clementina HOM05D005066 ORTHO05D006138 5.6e-154 548.1 367 72.2
Sp1g18250 Schrenkiella parvula HOM05D005066 ORTHO05D006138 7.3e-154 547.7 358 71.8
Medtr3g115200 Medicago truncatula HOM05D005066 ORTHO05D006138 9.5e-154 547.4 358 73.2
CsaV3_6G031630 Cucumis sativus L. HOM05D005066 ORTHO05D006138 1.6e-153 546.6 359 73.3
Cc10_g00720 Coffea canephora HOM05D005066 ORTHO05D006138 1.8e-152 543.1 358 70.9
Lj4C805G13 Lonicera japonica HOM05D005066 ORTHO05D006138 3.1e-152 542.3 375 68.8
MSTRG.27774 Avicennia marina HOM05D005066 ORTHO05D006138 1.5e-151 540.0 358 69.0
DCAR_013911 Daucus carota HOM05D005066 ORTHO05D006138 2.0e-151 539.7 357 72.3
Potri.002G011200 Populus trichocarpa HOM05D005066 ORTHO05D006138 3.4e-151 538.9 361 70.6
Rhsim06G0007900 Rhododendron simsii HOM05D005066 ORTHO05D006138 9.8e-151 537.3 394 67.5
CANSAT54G1628 Cannabis sativa HOM05D005066 ORTHO05D006138 1.7e-150 536.6 360 71.4
COL.COLO4_03999 Corchorus olitorius HOM05D005066 ORTHO05D006138 1.9e-149 533.1 338 74.0
Migut.C00955 Erythranthe guttata HOM05D005066 ORTHO05D006138 1.9e-149 533.1 358 69.3
Peaxi162Scf00893g00433 Petunia axillaris HOM05D005066 ORTHO05D006138 3.2e-149 532.3 359 71.0
PSO170G0128 Papaver somniferum HOM05D005066 ORTHO05D006138 7.0e-149 531.2 358 69.3
Nitab4.5_0000588g0150 Nicotiana tabacum HOM05D005066 ORTHO05D006138 9.2e-149 530.8 357 70.3
PSO210G7270 Papaver somniferum HOM05D005066 ORTHO05D006138 1.2e-148 530.4 358 69.3
SGA_v2.0_scaffold108G30855 Striga asiatica HOM05D005066 ORTHO05D006138 3.5e-148 528.9 358 68.7
MBI05_g05143_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 4.6e-148 528.5 358 69.0
Aa31LG4G6350 Aethionema arabicum HOM05D005066 ORTHO05D006138 8.6e-147 524.2 358 69.8
vmacro21822 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 8.6e-147 524.2 338 74.0
Carub.0002s2315 Capsella rubella HOM05D005066 ORTHO05D006138 1.5e-146 523.5 358 70.4
Sp5g31400 Schrenkiella parvula HOM05D005066 ORTHO05D006138 3.3e-146 522.3 358 69.0
Thhalv10018792m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 1.2e-145 520.4 358 69.0
Sed0022458 Sechium edule HOM05D005066 ORTHO05D006138 1.2e-145 520.4 359 70.5
BcaC08g47273 Brassica carinata HOM05D005066 ORTHO05D006138 1.6e-145 520.0 358 69.3
BolC6t40062H Brassica oleracea HOM05D005066 ORTHO05D006138 1.6e-145 520.0 358 69.3
AL2G36340 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 6.2e-145 518.1 358 69.6
Glyma.04G018500 Glycine max HOM05D005066 ORTHO05D006138 4.0e-144 515.4 338 73.1
PGSC0003DMG400009976 Solanum tuberosum HOM05D005066 ORTHO05D006138 1.5e-143 513.5 358 68.2
Aqoxy5G01046 Aquilegia oxysepala HOM05D005066 ORTHO05D006138 2.6e-143 512.7 353 67.4
ECA238G2025 Erigeron canadensis HOM05D005066 ORTHO05D006138 9.9e-143 510.8 358 67.9
Solyc04g082300.2 Solanum lycopersicum HOM05D005066 ORTHO05D006138 9.9e-143 510.8 358 67.9
Sopen04g035920 Solanum pennellii HOM05D005066 ORTHO05D006138 9.9e-143 510.8 358 67.9
Lsat_1_v5_gn_2_6481 Lactuca sativa HOM05D005066 ORTHO05D006138 2.9e-142 509.2 358 68.2
Sabra05G0193300 Salix brachista HOM05D005066 ORTHO05D006138 3.7e-142 508.8 402 63.4
HanXRQChr14g0428271 Helianthus annuus HOM05D005066 ORTHO05D006138 2.1e-140 503.1 358 67.6
Hund05118 Selenicereus undatus HOM05D005066 ORTHO05D006138 7.8e-140 501.1 357 68.9
AT1G76260 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 1.3e-139 500.4 358 67.9
C06p50230 Brassica napus HOM05D005066 ORTHO05D006138 3.9e-139 498.8 358 67.3
BraA07t31713Z Brassica rapa HOM05D005066 ORTHO05D006138 5.1e-139 498.4 358 67.3
Nn6g31745 Nelumbo nucifera HOM05D005066 ORTHO05D006138 1.1e-138 497.3 345 67.8
A07p41830 Brassica napus HOM05D005066 ORTHO05D006138 7.3e-138 494.6 358 67.0
CARHR069820 Cardamine hirsuta HOM05D005066 ORTHO05D006138 6.2e-137 491.5 358 66.5
unitig_26.g9893 Utricularia gibba HOM05D005066 ORTHO05D006138 8.1e-137 491.1 358 63.1
SalBow7G4394 Salvia bowleyana HOM05D005066 ORTHO05D006138 3.1e-136 489.2 430 56.5
Gohir.D05G256300 Gossypium hirsutum HOM05D005066 ORTHO05D006138 4.0e-136 488.8 314 73.6
AUR62043922 Chenopodium quinoa HOM05D005066 ORTHO05D006138 9.2e-133 477.6 358 66.5
ATR0661G259 Amborella trichopoda HOM05D005066 ORTHO05D006138 1.2e-132 477.2 357 61.3
BcaC05g25960 Brassica carinata HOM05D005066 ORTHO05D006138 1.6e-132 476.9 313 72.2
C05p19110 Brassica napus HOM05D005066 ORTHO05D006138 2.7e-132 476.1 328 69.2
BolC5t30611H Brassica oleracea HOM05D005066 ORTHO05D006138 2.7e-132 476.1 328 69.2
Sc15g0004490 Simmondsia chinensis HOM05D005066 ORTHO05D006138 1.1e-130 470.7 338 66.3
AUR62036885 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.5e-130 470.3 366 62.8
BNapus_Darmor_BZH_scaffold_170p00070 Brassica napus HOM05D005066 ORTHO05D006138 3.6e-129 465.7 313 70.3
Os08g0554000 Oryza sativa ssp. japonica HOM05D005066 ORTHO05D006138 2.9e-126 456.1 359 59.6
EL10Ac1g01978 Beta vulgaris HOM05D005066 ORTHO05D006138 4.9e-126 455.3 335 66.6
BcaC08g47124 Brassica carinata HOM05D005066 ORTHO05D006138 4.2e-125 452.2 338 65.7
Psat5g011560 Pisum sativum HOM05D005066 ORTHO05D006138 4.2e-125 452.2 288 73.3
Zm00001eb039840 Zea mays HOM05D005066 ORTHO05D006138 2.7e-124 449.5 359 58.8
Zm00001eb180420 Zea mays HOM05D005066 ORTHO05D006138 1.5e-119 433.7 359 57.1
Ah.13g072510 Amaranthus hybridus HOM05D005066 ORTHO05D006138 5.8e-119 431.8 422 55.0
TAR381G1664 Trochodendron aralioides HOM05D005066 ORTHO05D006138 8.4e-118 427.9 342 62.3
MELO3C026544.2 Cucumis melo HOM05D005066 ORTHO05D006138 5.1e-115 418.7 274 72.6
QL02p013964 Quercus lobata HOM05D005066 ORTHO05D006138 1.4e-109 400.6 251 74.5
CSS0013002 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 2.1e-108 396.7 357 57.7
Haze_22764 Corylus avellana HOM05D005066 ORTHO05D006138 2.2e-102 376.7 242 76.4
AUR62043921 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.3e-86 324.3 220 71.8
CARHR021010 Cardamine hirsuta HOM05D005066 ORTHO05D006138 3.3e-82 309.7 192 74.5
Atru.chr13.151 Acer truncatum HOM05D005066 ORTHO05D006138 2.6e-79 300.1 199 73.4
HPP92_008373 Vanilla planifolia HOM05D005066 ORTHO05D006138 9.4e-77 291.6 220 60.9
Actinidia29788 Actinidia chinensis HOM05D005066 ORTHO05D006138 2.3e-75 287.0 207 66.7
Mapoly0054s0060 Marchantia polymorpha HOM05D005066 ORTHO05D006138 3.0e-75 286.6 365 40.3
AagrBONN_evm.TU.Sc2ySwM_362.948 Anthoceros agrestis HOM05D005066 ORTHO05D006138 6.7e-75 285.4 363 39.4
SMO118G0316 Selaginella moellendorffii HOM05D005066 ORTHO05D006138 7.2e-69 265.4 361 38.5
ClCG08G009490 Citrullus lanatus HOM05D005066 ORTHO05D006138 1.4e-64 251.1 177 67.2
SHI08001 Sapria himalayana HOM05D005066 ORTHO05D006138 5.0e-62 242.7 217 56.7
AUR62043554 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.6e-47 194.5 163 60.7
Cre02.g109400 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 2.0e-47 194.1 377 29.4
ClCG08G009550 Citrullus lanatus HOM05D005066 ORTHO05D006138 1.3e-46 191.4 115 77.4
ClCG00G005440 Citrullus lanatus HOM05D005066 ORTHO05D006138 1.1e-45 188.3 126 70.6
MBI05_g41554_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 3.0e-43 180.3 129 65.9
QL02p013958 Quercus lobata HOM05D005066 ORTHO05D006138 1.6e-39 167.9 87 89.7
Duzib116G0540 Durio zibethinus HOM05D005066 ORTHO05D006138 2.0e-39 167.5 224 42.0
CDE02G3878 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 6.0e-39 166.0 127 63.0
Haze_22758 Corylus avellana HOM05D005066 ORTHO05D006138 3.1e-27 127.1 80 72.5
PRCOL_00000380 Prasinoderma coloniale HOM05D005066 ORTHO05D006138 1.3e-25 121.7 310 25.2
CDE04G2988 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 3.2e-24 117.1 81 64.2
vmacro11237 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 1.1e-19 102.1 69 71.0
CBR_g17938 Chara braunii HOM05D005066 ORTHO05D006138 1.8e-19 101.3 205 29.8
vmacro11236 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 3.1e-19 100.5 70 68.6
SEGI_37952 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 5.2e-19 99.8 101 45.5
SEGI_07968 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 9.6e-13 79.0 51 68.6
Actinidia09068 Actinidia chinensis HOM05D005066 ORTHO05D006138 1.2e-12 78.6 54 74.1
Actinidia07458 Actinidia chinensis HOM05D005066 ORTHO05D006138 4.7e-12 76.6 44 77.3
Peaxi162Scf00362g00643 Petunia axillaris HOM05D000347 ORTHO05D001997 1.4e-11 75.1 219 24.2
MCO04G183 Micromonas commoda HOM05D005066 ORTHO05D006138 1.8e-11 74.7 364 23.1
arahy.Tifrunner.gnm1.ann1.7RQ6TB Arachis hypogaea HOM05D005066 ORTHO05D006138 2.4e-11 74.3 53 58.5
Glyma.12G033100 Glycine max HOM05D000347 ORTHO05D001997 1.2e-10 72.0 166 25.3
SGA_v2.0_scaffold275G46594 Striga asiatica HOM05D005066 ORTHO05D406259 2.0e-10 71.2 175 33.7
arahy.Tifrunner.gnm1.ann1.FBZU85 Arachis hypogaea HOM05D005066 ORTHO05D006138 3.4e-10 70.5 146 32.9
Cre02.g109150 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 1.7e-09 68.2 71 38.0
Glyma.11G091500 Glycine max HOM05D000347 ORTHO05D001997 1.7e-09 68.2 144 27.1
AagrBONN_evm.TU.Sc2ySwM_228.219 Anthoceros agrestis HOM05D002302 ORTHO05D002728 1.1e-08 65.5 157 24.8
Ah.01g008430 Amaranthus hybridus HOM05D000347 ORTHO05D001997 2.4e-08 64.3 170 24.7
Os11g0660300 Oryza sativa ssp. japonica HOM05D005151 ORTHO05D006322 3.2e-08 63.9 178 25.3
Zm00001eb165440 Zea mays HOM05D005151 ORTHO05D006322 3.2e-08 63.9 178 24.7
Solyc01g111590.4 Solanum lycopersicum HOM05D000347 ORTHO05D001997 4.2e-08 63.5 145 26.2
Sopen01g053630 Solanum pennellii HOM05D000347 ORTHO05D001997 4.2e-08 63.5 145 26.2
HPP92_001386 Vanilla planifolia HOM05D001978 ORTHO05D003036 4.2e-08 63.5 196 24.0
Nitab4.5_0000283g0360 Nicotiana tabacum HOM05D000347 ORTHO05D001997 9.3e-08 62.4 148 24.3
Lj9A393T56 Lonicera japonica HOM05D000347 ORTHO05D001997 1.2e-07 62.0 220 21.8
Nitab4.5_0003914g0030 Nicotiana tabacum HOM05D000347 ORTHO05D001997 1.2e-07 62.0 148 24.3
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 1.2e-07 62.0 48 56.2
vmacro21823 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 2.7e-07 60.8 33 78.8
SEGI_12583 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 3.5e-07 60.5 68 41.2
FvH4_2g01180 Fragaria vesca HOM05D000347 ORTHO05D001997 4.6e-07 60.1 140 22.1
FAN24G3508 Fragaria x ananassa HOM05D000347 ORTHO05D001997 4.6e-07 60.1 140 22.1
PGSC0003DMG400006171 Solanum tuberosum HOM05D000347 ORTHO05D001997 6.0e-07 59.7 147 26.5
FAN15G3271 Fragaria x ananassa HOM05D000347 ORTHO05D001997 1.0e-06 58.9 140 21.4
FAN20G0646 Fragaria x ananassa HOM05D000347 ORTHO05D001997 1.0e-06 58.9 140 21.4
C05p13640 Brassica napus HOM05D003006 ORTHO05D002838 1.3e-06 58.5 187 28.3
MBI16_g13364_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 3.0e-06 57.4 217 24.9
BolC5t30100H Brassica oleracea HOM05D003006 ORTHO05D003438 3.9e-06 57.0 187 27.8
FAN27G1321 Fragaria x ananassa HOM05D000347 ORTHO05D001997 3.9e-06 57.0 140 22.1
CiPaw.02G067000 Carya illinoinensis HOM05D000836 ORTHO05D000709 5.1e-06 56.6 201 23.4
TAR636G2670 Trochodendron aralioides HOM05D003006 ORTHO05D003438 5.1e-06 56.6 191 28.3
BraA06t24328Z Brassica rapa HOM05D003006 ORTHO05D003438 8.7e-06 55.8 187 27.3


User provided reference genes

Program Settings