Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G0819 Fragaria x ananassa HOM05D004619 ORTHO05D005738 0.0e+00 1442.9 713 100.0
FvH4_2g35520 Fragaria vesca HOM05D004619 ORTHO05D005738 0.0e+00 1437.2 713 99.6
FAN20G0141 Fragaria x ananassa HOM05D004619 ORTHO05D005738 0.0e+00 1402.9 724 96.1
RcHm_v2.0_Chr6g0306261 Rosa chinensis HOM05D004619 ORTHO05D005738 0.0e+00 1370.1 716 94.8
Prupe.1G448000 Prunus persica HOM05D004619 ORTHO05D005738 0.0e+00 1235.7 725 84.3
MD15G1093200 Malus domestica HOM05D004619 ORTHO05D005738 0.0e+00 1227.6 725 84.0
QL12p041325 Quercus lobata HOM05D004619 ORTHO05D005738 0.0e+00 1130.5 723 76.6
GSVIVG01035621001 Vitis vinifera HOM05D004619 ORTHO05D005738 0.0e+00 1126.3 717 77.1
CSS0016966 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 0.0e+00 1122.5 716 76.7
CSS0048446 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 0.0e+00 1120.1 716 76.4
Duzib168G0872 Durio zibethinus HOM05D004619 ORTHO05D005738 0.0e+00 1117.8 716 75.8
CANSAT25G1337 Cannabis sativa HOM05D004619 ORTHO05D005738 0.0e+00 1113.6 726 75.8
Atru.chr7.2086 Acer truncatum HOM05D004619 ORTHO05D005738 0.0e+00 1113.2 713 75.6
Hma1.2p1_0049F.1_g028570 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 0.0e+00 1112.4 719 75.5
Thecc.09G045500 Theobroma cacao HOM05D004619 ORTHO05D005738 0.0e+00 1112.1 716 76.1
COL.COLO4_20972 Corchorus olitorius HOM05D004619 ORTHO05D005738 0.0e+00 1103.2 715 75.4
Cfa013367 Carpinus fangiana HOM05D004619 ORTHO05D005738 0.0e+00 1102.0 722 74.5
Ciclev10007610m.g Citrus clementina HOM05D004619 ORTHO05D005738 0.0e+00 1095.9 702 74.8
Gohir.D06G092300 Gossypium hirsutum HOM05D004619 ORTHO05D005738 0.0e+00 1089.7 716 74.6
Lj8A581G22 Lonicera japonica HOM05D004619 ORTHO05D005738 0.0e+00 1088.6 722 74.1
Gorai.010G106300 Gossypium raimondii HOM05D004619 ORTHO05D005738 0.0e+00 1085.9 716 74.4
Nn8g39783 Nelumbo nucifera HOM05D004619 ORTHO05D005738 0.0e+00 1081.6 722 73.7
Gohir.A06G092700 Gossypium hirsutum HOM05D004619 ORTHO05D005738 2.2e-307 1058.5 716 73.2
Eucgr.C00596 Eucalyptus grandis HOM05D004619 ORTHO05D005738 1.9e-306 1055.4 717 71.8
Lalb_Chr14g0362511 Lupinus albus HOM05D004619 ORTHO05D005738 7.5e-303 1043.5 719 70.5
Aqoxy7G03899 Aquilegia oxysepala HOM05D004619 ORTHO05D005738 3.1e-301 1038.1 724 71.3
Nitab4.5_0003794g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 7.0e-301 1036.9 723 70.3
Peaxi162Scf00227g00812 Petunia axillaris HOM05D004619 ORTHO05D005738 3.5e-300 1034.6 717 71.0
Nitab4.5_0001515g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 5.9e-300 1033.9 723 70.4
Medtr1g006690 Medicago truncatula HOM05D004619 ORTHO05D005738 7.7e-300 1033.5 690 72.2
arahy.Tifrunner.gnm1.ann1.Z9IJD2 Arachis hypogaea HOM05D004619 ORTHO05D005738 1.0e-299 1033.1 720 70.8
Glyma.17G193800 Glycine max HOM05D004619 ORTHO05D005738 8.5e-299 1030.0 705 71.5
Solyc08g066580.4 Solanum lycopersicum HOM05D004619 ORTHO05D005738 1.9e-298 1028.9 720 70.6
Sopen08g020420 Solanum pennellii HOM05D004619 ORTHO05D005738 4.2e-298 1027.7 720 70.3
arahy.Tifrunner.gnm1.ann1.CES4LM Arachis hypogaea HOM05D004619 ORTHO05D005738 9.4e-298 1026.5 720 70.7
Lj1g0001172 Lotus japonicus HOM05D004619 ORTHO05D005738 1.6e-297 1025.8 709 70.9
Ca_12754_v3 Cicer arietinum L. HOM05D004619 ORTHO05D005738 2.1e-297 1025.4 707 70.2
MBI01_g18389_MAGBIO Magnolia biondii HOM05D004619 ORTHO05D005738 4.7e-297 1024.2 719 69.5
PSO210G5473 Papaver somniferum HOM05D004619 ORTHO05D005738 4.7e-297 1024.2 713 70.3
PSO210G6185 Papaver somniferum HOM05D004619 ORTHO05D005738 8.0e-297 1023.5 715 69.7
TPR.G24498 Trifolium pratense HOM05D004619 ORTHO05D005738 6.8e-296 1020.4 707 69.9
Lsat_1_v5_gn_6_23120 Lactuca sativa HOM05D004619 ORTHO05D005738 1.2e-295 1019.6 723 69.4
HanXRQChr13g0402061 Helianthus annuus HOM05D004619 ORTHO05D005738 2.6e-295 1018.5 722 70.5
Cc08_g09590 Coffea canephora HOM05D004619 ORTHO05D005738 1.7e-294 1015.8 720 69.0
TAR636G2525 Trochodendron aralioides HOM05D004619 ORTHO05D005738 1.7e-294 1015.8 658 74.6
Thhalv10024536m.g Eutrema salsugineum HOM05D004619 ORTHO05D005738 2.2e-294 1015.4 719 67.7
AT4G32910 Arabidopsis thaliana HOM05D004619 ORTHO05D005738 3.7e-294 1014.6 715 68.0
DCAR_004468 Daucus carota HOM05D004619 ORTHO05D005738 8.3e-294 1013.4 715 69.7
CiPaw.07G204000 Carya illinoinensis HOM05D004619 ORTHO05D005738 2.4e-293 1011.9 633 77.7
Haze_21890 Corylus avellana HOM05D004619 ORTHO05D005738 4.1e-293 1011.1 730 69.9
AL7G18800 Arabidopsis lyrata HOM05D004619 ORTHO05D005738 1.2e-292 1009.6 715 67.8
CARHR240910 Cardamine hirsuta HOM05D004619 ORTHO05D005738 1.6e-292 1009.2 715 67.7
Sp7g30680 Schrenkiella parvula HOM05D004619 ORTHO05D005738 2.0e-292 1008.8 719 67.7
Carub.0007s0758 Capsella rubella HOM05D004619 ORTHO05D005738 1.7e-291 1005.7 714 67.6
THA.LOC104803757 Tarenaya hassleriana HOM05D004619 ORTHO05D005738 1.9e-290 1002.3 714 68.2
Sed0007447 Sechium edule HOM05D004619 ORTHO05D005738 2.1e-289 998.8 722 68.4
CsaV3_2G030840 Cucumis sativus L. HOM05D004619 ORTHO05D005738 1.8e-288 995.7 718 67.5
Migut.E01528 Erythranthe guttata HOM05D004619 ORTHO05D005738 2.3e-288 995.3 718 68.0
BolC1t00559H Brassica oleracea HOM05D004619 ORTHO05D005738 4.0e-288 994.6 716 66.8
BcaC09g52091 Brassica carinata HOM05D004619 ORTHO05D005738 1.2e-287 993.0 721 66.7
C01p05790 Brassica napus HOM05D004619 ORTHO05D005738 2.6e-287 991.9 721 66.7
Manes.16G075300 Manihot esculenta HOM05D004619 ORTHO05D005738 2.2e-286 988.8 724 68.2
EL10Ac2g04016 Beta vulgaris HOM05D004619 ORTHO05D005738 8.3e-286 986.9 723 67.2
Sc23g0005210 Simmondsia chinensis HOM05D004619 ORTHO05D005738 1.8e-285 985.7 723 66.5
A01p05370 Brassica napus HOM05D004619 ORTHO05D005738 3.1e-285 984.9 721 66.4
BraA01t00511Z Brassica rapa HOM05D004619 ORTHO05D005738 4.1e-285 984.6 721 66.0
ECA233G0099 Erigeron canadensis HOM05D004619 ORTHO05D005738 2.0e-284 982.2 736 65.8
Rhsim07G0146900 Rhododendron simsii HOM05D004619 ORTHO05D005738 2.9e-283 978.4 702 69.1
CAN.G400.8 Capsicum annuum HOM05D004619 ORTHO05D005738 3.8e-283 978.0 652 72.7
Aa31sc131G40 Aethionema arabicum HOM05D004619 ORTHO05D005738 2.8e-281 971.8 732 64.2
MSTRG.1660 Avicennia marina HOM05D004619 ORTHO05D005738 8.0e-281 970.3 719 66.9
ClCG08G012210 Citrullus lanatus HOM05D004619 ORTHO05D005738 1.8e-280 969.1 718 65.9
SGA_v2.0_scaffold169G38654 Striga asiatica HOM05D004619 ORTHO05D005738 2.6e-279 965.3 718 66.4
SalBow1G6937 Salvia bowleyana HOM05D004619 ORTHO05D005738 9.2e-277 956.8 726 65.2
ATR0705G091 Amborella trichopoda HOM05D004619 ORTHO05D005738 1.1e-274 949.9 727 64.4
vmacro05371 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 3.3e-274 948.3 981 53.9
Actinidia15739 Actinidia chinensis HOM05D004619 ORTHO05D005738 5.6e-274 947.6 713 67.7
CDE02G4285 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 2.1e-273 945.7 722 64.3
PGR031G0242 Punica granatum HOM05D004619 ORTHO05D005738 1.2e-271 939.9 709 66.6
Phvul.001G074000 Phaseolus vulgaris HOM05D004619 ORTHO05D005738 2.9e-270 935.3 649 70.1
MELO3C011139.2 Cucumis melo HOM05D004619 ORTHO05D005738 1.9e-269 932.6 725 64.0
Eucgr.C00551 Eucalyptus grandis HOM05D004619 ORTHO05D005738 1.2e-268 929.9 653 69.5
Sabra18G0044200 Salix brachista HOM05D004619 ORTHO05D005738 3.0e-267 925.2 629 71.5
Sabra18G0044100 Salix brachista HOM05D004619 ORTHO05D005738 1.2e-265 919.8 625 71.8
Ah.10g035010 Amaranthus hybridus HOM05D004619 ORTHO05D005738 3.6e-265 918.3 721 64.4
Os01g0746200 Oryza sativa ssp. japonica HOM05D004619 ORTHO05D005738 4.0e-264 914.8 733 61.8
Dinv27905 Davidia involucrata HOM05D004619 ORTHO05D005738 2.0e-263 912.5 542 81.2
Hma1.2p1_0049F.1_g028580 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 3.0e-259 898.7 583 74.4
HPP92_005572 Vanilla planifolia HOM05D004619 ORTHO05D005738 3.9e-259 898.3 723 61.0
Zm00001eb152980 Zea mays HOM05D004619 ORTHO05D005738 3.3e-258 895.2 732 60.5
AUR62039705 Chenopodium quinoa HOM05D004619 ORTHO05D005738 1.7e-254 882.9 589 70.8
Psat6g038280 Pisum sativum HOM05D004619 ORTHO05D005738 1.2e-244 850.1 568 71.8
Hund19512 Selenicereus undatus HOM05D004619 ORTHO05D005738 5.1e-243 844.7 871 52.2
AUR62009276 Chenopodium quinoa HOM05D004619 ORTHO05D005738 9.0e-240 833.9 724 59.4
vmacro23276 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 2.1e-236 822.8 975 50.2
SHI18685 Sapria himalayana HOM05D004619 ORTHO05D005738 1.6e-217 760.0 724 56.9
Potri.018G044300 Populus trichocarpa HOM05D004619 ORTHO05D005738 2.8e-201 706.1 453 75.3
Oeu031693.1 Olea europaea HOM05D004619 ORTHO05D005738 6.7e-187 658.3 480 66.9
Pp3c16_3750 Physcomitrium patens HOM05D004619 ORTHO05D005738 3.5e-183 646.0 748 46.4
Mapoly0014s0066 Marchantia polymorpha HOM05D004619 ORTHO05D005738 1.8e-171 607.1 699 44.5
VMungo0647G0418 Vigna mungo HOM05D004619 ORTHO05D005738 8.3e-161 571.6 362 75.4
AagrBONN_evm.TU.Sc2ySwM_368.2349 Anthoceros agrestis HOM05D004619 ORTHO05D005738 2.7e-159 566.6 643 46.0
Actinidia14677 Actinidia chinensis HOM05D004619 ORTHO05D005738 1.6e-148 530.8 435 60.0
BcaC09g52090 Brassica carinata HOM05D004619 ORTHO05D005738 8.4e-137 491.9 380 62.9
Psat7g196840 Pisum sativum HOM05D004619 ORTHO05D005738 2.1e-108 397.5 275 66.5
Cpa.g.sc2198.1 Carica papaya HOM05D004619 ORTHO05D005738 2.5e-101 374.0 226 81.9
SGA_v2.0_scaffold163G38073 Striga asiatica HOM05D004619 ORTHO05D005738 5.1e-94 349.7 252 68.3
VMungo0647G1361 Vigna mungo HOM05D004619 ORTHO05D005738 1.5e-85 321.6 260 62.3
unitig_578.g16587 Utricularia gibba HOM05D004619 ORTHO05D005738 1.0e-81 308.9 291 56.0
Actinidia14676 Actinidia chinensis HOM05D004619 ORTHO05D005738 1.5e-69 268.5 167 82.0
unitig_578.g16586 Utricularia gibba HOM05D004619 ORTHO05D005738 1.0e-65 255.8 269 49.8
Cpa.g.c44012 Carica papaya HOM05D004619 ORTHO05D005738 1.9e-64 251.5 150 74.0
SMO146G0002 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 1.5e-45 188.7 249 43.4
Lj5g0023577 Lotus japonicus HOM05D004619 ORTHO05D005738 5.4e-43 180.3 154 62.3
SMO173G0066 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 6.6e-41 173.3 249 41.0
SMO173G0047 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 9.5e-40 169.5 227 42.3
FvH4_4g13810 Fragaria vesca HOM05D004619 ORTHO05D005738 1.6e-39 168.7 107 83.2
SEGI_12145 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 3.3e-32 144.4 112 61.6
Cpa.g.sc78.2 Carica papaya HOM05D004619 ORTHO05D005738 6.2e-31 140.2 129 56.6
SMO173G0051 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 1.5e-29 135.6 154 46.1
arahy.Tifrunner.gnm1.ann1.7I309S Arachis hypogaea HOM05D004619 ORTHO05D005738 1.7e-28 132.1 130 55.4
arahy.Tifrunner.gnm1.ann1.VKWI5R Arachis hypogaea HOM05D004619 ORTHO05D005738 6.4e-28 130.2 98 67.3
arahy.Tifrunner.gnm1.ann1.2KYU87 Arachis hypogaea HOM05D004619 ORTHO05D005738 8.3e-28 129.8 128 55.5
CBR_g55392 Chara braunii HOM05D000019 ORTHO05D000048 3.2e-27 127.9 169 38.5
FvH4_6g10180 Fragaria vesca HOM05D004619 ORTHO05D003203 9.2e-27 126.3 79 75.9
SEGI_32974 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 2.7e-26 124.8 134 50.7
FAN14G2999 Fragaria x ananassa HOM05D004619 ORTHO05D003203 3.9e-25 120.9 61 90.2
Cpa.g.sc78.1 Carica papaya HOM05D004619 ORTHO05D005738 2.1e-23 115.2 83 66.3
Dinv23371 Davidia involucrata HOM05D004619 ORTHO05D005738 2.8e-23 114.8 102 58.8
arahy.Tifrunner.gnm1.ann1.EP17SZ Arachis hypogaea HOM05D004619 ORTHO05D005738 3.1e-22 111.3 104 59.6
BolC6t36187H Brassica oleracea HOM05D004619 ORTHO05D005738 7.6e-21 106.7 109 51.4
Lsat_1_v5_gn_4_165860 Lactuca sativa HOM05D004619 ORTHO05D005738 6.4e-20 103.6 69 69.6
Lsat_1_v5_gn_8_131800 Lactuca sativa HOM05D003157 ORTHO05D004447 1.6e-18 99.0 74 73.0
BolC9t59437H Brassica oleracea HOM05D004619 ORTHO05D005738 7.8e-18 96.7 109 48.6
C09p66170 Brassica napus HOM05D004619 ORTHO05D005738 2.3e-17 95.1 109 47.7
Dinv23369 Davidia involucrata HOM05D004619 ORTHO05D005738 5.6e-16 90.5 52 80.8
QL08p060719 Quercus lobata HOM05D004619 ORTHO05D005738 3.6e-15 87.8 55 76.4
Lsat_1_v5_gn_8_1401 Lactuca sativa HOM05D004619 ORTHO05D005738 9.0e-14 83.2 58 62.1
CBR_g55394 Chara braunii HOM05D004619 ORTHO05D005738 1.2e-13 82.8 167 29.9
Dinv23370 Davidia involucrata HOM05D004619 ORTHO05D005738 4.4e-13 80.9 128 38.3
CDE08G0324 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 7.6e-13 80.1 65 61.5
CBR_g55391 Chara braunii HOM05D000019 ORTHO05D000002 1.7e-12 79.0 108 39.8
BcaC08g43687 Brassica carinata HOM05D004619 ORTHO05D005738 3.8e-12 77.8 57 66.7
A06p44050 Brassica napus HOM05D004619 ORTHO05D005738 1.9e-11 75.5 57 64.9
BraA06t27279Z Brassica rapa HOM05D004619 ORTHO05D005738 1.9e-11 75.5 57 64.9
SEGI_14473 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 1.9e-11 75.5 53 64.2
Lsat_1_v5_gn_6_18560 Lactuca sativa HOM05D000118 ORTHO05D005738 2.4e-11 75.1 53 64.2
Nn8g39123 Nelumbo nucifera HOM05D005233 ORTHO05D006308 1.6e-10 72.4 42 85.7
BcaB03g16865 Brassica carinata HOM05D004619 ORTHO05D005738 3.5e-10 71.2 57 61.4
Glyma.14G146000 Glycine max HOM05D004619 ORTHO05D005738 1.3e-09 69.3 53 67.9
arahy.Tifrunner.gnm1.ann1.6B1VGR Arachis hypogaea HOM05D004619 ORTHO05D005738 6.6e-09 67.0 117 40.2
FAN27G0613 Fragaria x ananassa HOM05D052060 ORTHO05D046597 1.1e-06 59.7 40 75.0


User provided reference genes

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