Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G3317 Fragaria x ananassa HOM05D006162 ORTHO05D007627 2.7e-230 801.6 386 100.0
FAN23G1837 Fragaria x ananassa HOM05D006162 ORTHO05D007627 2.1e-179 632.5 407 79.1
FAN28G1724 Fragaria x ananassa HOM05D006162 ORTHO05D007627 2.8e-179 632.1 407 79.1
RcHm_v2.0_Chr2g0118111 Rosa chinensis HOM05D006162 ORTHO05D007627 1.8e-178 629.4 419 77.3
FvH4_1g23260 Fragaria vesca HOM05D006162 ORTHO05D007627 3.8e-152 542.0 297 89.9
Prupe.6G165900 Prunus persica HOM05D006162 ORTHO05D007627 2.5e-143 512.7 408 64.7
MD01G1015800 Malus domestica HOM05D006162 ORTHO05D007627 1.2e-137 493.8 408 62.3
FAN19G1907 Fragaria x ananassa HOM05D006162 ORTHO05D007627 5.0e-136 488.4 407 65.6
QL06p031367 Quercus lobata HOM05D006162 ORTHO05D007627 4.9e-123 445.3 405 56.3
Cfa002788 Carpinus fangiana HOM05D006162 ORTHO05D007627 2.4e-122 443.0 406 57.4
Dinv05774 Davidia involucrata HOM05D006162 ORTHO05D007627 6.4e-115 418.3 418 52.6
Haze_25085 Corylus avellana HOM05D006162 ORTHO05D007627 1.1e-114 417.5 480 49.0
CiPaw.03G131500 Carya illinoinensis HOM05D006162 ORTHO05D007627 7.0e-114 414.8 382 56.8
CANSAT01G0187 Cannabis sativa HOM05D006162 ORTHO05D007627 1.6e-113 413.7 393 53.7
GSVIVG01022265001 Vitis vinifera HOM05D006162 ORTHO05D007627 1.1e-109 401.0 415 52.5
Ciclev10025253m.g Citrus clementina HOM05D006162 ORTHO05D007627 1.3e-107 394.0 410 50.0
Thecc.07G145700 Theobroma cacao HOM05D006162 ORTHO05D007627 1.6e-105 387.1 416 50.7
Gohir.D13G156100 Gossypium hirsutum HOM05D006162 ORTHO05D007627 3.9e-104 382.5 413 50.4
Nn5g27123 Nelumbo nucifera HOM05D006162 ORTHO05D007627 3.9e-104 382.5 404 49.8
COL.COLO4_17421 Corchorus olitorius HOM05D000398 ORTHO05D007627 1.5e-103 380.6 407 50.9
Gorai.013G176700 Gossypium raimondii HOM05D006162 ORTHO05D007627 2.5e-103 379.8 413 50.1
Duzib187G0444 Durio zibethinus HOM05D006162 ORTHO05D007627 4.3e-103 379.0 416 49.5
Gohir.A13G151700 Gossypium hirsutum HOM05D006162 ORTHO05D007627 4.3e-103 379.0 413 50.1
Potri.007G077100 Populus trichocarpa HOM05D006162 ORTHO05D007627 9.5e-103 377.9 409 50.9
Manes.12G145600 Manihot esculenta HOM05D006162 ORTHO05D007627 2.8e-102 376.3 410 49.0
VMungo0251G2144 Vigna mungo HOM05D006162 ORTHO05D007627 1.4e-101 374.0 410 49.0
TAR625G0476 Trochodendron aralioides HOM05D006162 ORTHO05D007627 1.8e-101 373.6 422 47.9
Phvul.002G267600 Phaseolus vulgaris HOM05D006162 ORTHO05D007627 3.4e-100 369.4 409 48.7
Glyma.08G145100 Glycine max HOM05D006162 ORTHO05D007627 8.3e-99 364.8 410 47.3
Glyma.05G186500 Glycine max HOM05D006162 ORTHO05D007627 4.1e-98 362.5 410 47.3
TWI79G1464 Tripterygium wilfordii HOM05D006162 ORTHO05D007627 5.4e-98 362.1 413 47.2
Ca_17673_v3 Cicer arietinum L. HOM05D006162 ORTHO05D007627 5.1e-96 355.5 412 47.8
TPR.G2184 Trifolium pratense HOM05D006162 ORTHO05D007627 6.6e-96 355.1 410 47.1
ClCG02G000880 Citrullus lanatus HOM05D006162 ORTHO05D007627 1.9e-95 353.6 412 46.6
Medtr8g092350 Medicago truncatula HOM05D006162 ORTHO05D007627 2.5e-95 353.2 409 46.2
Peaxi162Scf00025g03226 Petunia axillaris HOM05D006162 ORTHO05D007627 2.1e-94 350.1 411 46.7
Lj4g0017392 Lotus japonicus HOM05D006162 ORTHO05D007627 2.8e-94 349.7 412 47.1
CsaV3_2G017830 Cucumis sativus L. HOM05D006162 ORTHO05D007627 6.2e-94 348.6 447 45.2
arahy.Tifrunner.gnm1.ann1.2PK97N Arachis hypogaea HOM05D006162 ORTHO05D007627 2.6e-92 343.2 411 46.0
Rhsim08G0004700 Rhododendron simsii HOM05D006162 ORTHO05D007627 3.4e-92 342.8 415 46.7
arahy.Tifrunner.gnm1.ann1.QP02N2 Arachis hypogaea HOM05D006162 ORTHO05D007627 1.3e-91 340.9 405 45.7
Psat7g049400 Pisum sativum HOM05D006162 ORTHO05D007627 6.4e-91 338.6 408 45.6
Sed0011946 Sechium edule HOM05D006162 ORTHO05D007627 4.1e-90 335.9 410 47.1
Nitab4.5_0000184g0020 Nicotiana tabacum HOM05D006162 ORTHO05D007627 1.5e-87 327.4 410 44.1
Sc16g0004090 Simmondsia chinensis HOM05D006162 ORTHO05D007627 1.5e-87 327.4 405 44.4
Cc07_g16680 Coffea canephora HOM05D006162 ORTHO05D007627 2.5e-87 326.6 418 44.0
Aqoxy6G00404 Aquilegia oxysepala HOM05D006162 ORTHO05D007627 1.6e-86 323.9 416 42.3
EL10Ac6g15232 Beta vulgaris HOM05D006162 ORTHO05D007627 4.7e-86 322.4 409 44.5
Hund19624 Selenicereus undatus HOM05D006162 ORTHO05D007627 8.1e-86 321.6 409 42.5
CAN.G452.13 Capsicum annuum HOM05D006162 ORTHO05D007627 1.8e-85 320.5 411 43.1
PGSC0003DMG400019694 Solanum tuberosum HOM05D006162 ORTHO05D007627 4.0e-85 319.3 412 43.0
THA.LOC104824832 Tarenaya hassleriana HOM05D006162 ORTHO05D007627 6.9e-85 318.5 405 43.7
Eucgr.H04890 Eucalyptus grandis HOM05D006162 ORTHO05D007627 9.0e-85 318.2 406 45.3
Nitab4.5_0007426g0010 Nicotiana tabacum HOM05D006162 ORTHO05D007627 7.6e-84 315.1 411 43.1
Sopen04g022820 Solanum pennellii HOM05D006162 ORTHO05D007627 2.9e-83 313.2 410 44.1
Sabra07G0065000 Salix brachista HOM05D006162 ORTHO05D007627 1.4e-82 310.8 389 46.0
Solyc04g051410.4 Solanum lycopersicum HOM05D006162 ORTHO05D007627 4.2e-82 309.3 410 44.1
Migut.H02454 Erythranthe guttata HOM05D006162 ORTHO05D007627 1.2e-81 307.8 414 42.5
MBI17_g27203_MAGBIO Magnolia biondii HOM05D006162 ORTHO05D007627 4.3e-79 299.3 419 41.8
HanXRQChr14g0446061 Helianthus annuus HOM05D006162 ORTHO05D007627 5.6e-79 298.9 405 41.2
CDE08G0720 Ceratophyllum demersum HOM05D006162 ORTHO05D007627 1.3e-78 297.7 415 42.9
Aa31LG6G15910 Aethionema arabicum HOM05D006162 ORTHO05D007627 2.1e-78 297.0 405 42.0
AUR62003642 Chenopodium quinoa HOM05D006162 ORTHO05D007627 6.4e-75 285.4 406 40.6
AL7G11390 Arabidopsis lyrata HOM05D006162 ORTHO05D007627 8.4e-75 285.0 406 42.4
ECA238G0813 Erigeron canadensis HOM05D006162 ORTHO05D007627 4.2e-74 282.7 415 40.0
AT4G39370 Arabidopsis thaliana HOM05D006162 ORTHO05D007627 9.3e-74 281.6 406 42.1
Lsat_1_v5_gn_2_67341 Lactuca sativa HOM05D006162 ORTHO05D007627 9.3e-74 281.6 409 40.1
Ah.02g123760 Amaranthus hybridus HOM05D006162 ORTHO05D007627 1.2e-73 281.2 408 42.4
C03p77810 Brassica napus HOM05D006162 ORTHO05D007627 1.2e-73 281.2 406 42.4
BcaC01g00286 Brassica carinata HOM05D006162 ORTHO05D007627 1.6e-73 280.8 406 42.4
Carub.0007s0129 Capsella rubella HOM05D006162 ORTHO05D007627 7.9e-73 278.5 409 42.3
BolC3t20037H Brassica oleracea HOM05D006162 ORTHO05D007627 1.3e-72 277.7 414 41.5
Sp7g36490 Schrenkiella parvula HOM05D006162 ORTHO05D007627 8.7e-72 275.0 415 40.0
BraA08t34318Z Brassica rapa HOM05D006162 ORTHO05D007627 1.5e-71 274.2 408 41.4
A08p23610 Brassica napus HOM05D006162 ORTHO05D007627 3.3e-71 273.1 406 41.4
Oeu001984.1 Olea europaea HOM05D006162 ORTHO05D007627 4.3e-71 272.7 406 40.6
Thhalv10025021m.g Eutrema salsugineum HOM05D006162 ORTHO05D007627 1.6e-70 270.8 409 40.8
Atru.chr4.714 Acer truncatum HOM05D006162 ORTHO05D007627 1.4e-69 267.7 190 64.7
BcaB03g12289 Brassica carinata HOM05D006162 ORTHO05D007627 6.9e-69 265.4 407 40.0
Zm00001eb082910 Zea mays HOM05D006162 ORTHO05D007627 9.9e-68 261.5 404 39.6
Cpa.g.sc72.50 Carica papaya HOM05D006162 ORTHO05D007627 4.2e-66 256.1 190 62.6
SGA_v2.0_scaffold2G01268 Striga asiatica HOM05D006162 ORTHO05D007627 4.2e-66 256.1 416 39.4
PGR102G2965 Punica granatum HOM05D006162 ORTHO05D007627 7.1e-66 255.4 411 39.4
Lalb_Chr13g0296311 Lupinus albus HOM05D006162 ORTHO05D007627 1.8e-64 250.8 189 61.9
ATR0584G096 Amborella trichopoda HOM05D006162 ORTHO05D007627 3.3e-63 246.5 415 36.1
PSO675G6781 Papaver somniferum HOM05D006162 ORTHO05D007627 9.6e-63 245.0 586 30.9
unitig_899.g14618 Utricularia gibba HOM05D006162 ORTHO05D007627 1.6e-62 244.2 409 34.7
PSO541G4150 Papaver somniferum HOM05D006162 ORTHO05D007627 1.9e-58 230.7 233 48.9
Lj4A860G2 Lonicera japonica HOM05D006162 ORTHO05D007627 5.5e-58 229.2 383 37.3
Nitab4.5_0005242g0040 Nicotiana tabacum HOM05D006162 ORTHO05D007627 2.3e-56 223.8 278 44.6
Lj1g0027635 Lotus japonicus HOM05D006162 ORTHO05D007627 8.7e-56 221.9 265 45.7
DCAR_011465 Daucus carota HOM05D006162 ORTHO05D007627 4.3e-55 219.5 213 52.1
Lj1g0016947 Lotus japonicus HOM05D006162 ORTHO05D007627 9.7e-55 218.4 235 48.5
HPP92_009257 Vanilla planifolia HOM05D006162 ORTHO05D007627 2.4e-53 213.8 412 34.2
CSS0015273 Camellia sinensis var. sinensis HOM05D006162 ORTHO05D007627 3.8e-51 206.5 418 35.2
Hma1.2p1_1688F.1_g297590 Hydrangea macrophylla HOM05D006162 ORTHO05D007627 1.6e-49 201.1 144 66.0
SEGI_22619 Sequoiadendron giganteum HOM05D006162 ORTHO05D007627 1.1e-47 194.9 535 29.2
vmacro18056 Vaccinium macrocarpon HOM05D006162 ORTHO05D007627 1.5e-44 184.5 145 62.8
MELO3C020973.2 Cucumis melo HOM05D006162 ORTHO05D007627 1.0e-40 171.8 278 38.5
AUR62017952 Chenopodium quinoa HOM05D006162 ORTHO05D007627 9.7e-39 165.2 312 37.2
vmacro18055 Vaccinium macrocarpon HOM05D006162 ORTHO05D007627 1.7e-35 154.5 265 39.2
Atru.chr4.715 Acer truncatum HOM05D006162 ORTHO05D007627 3.6e-33 146.7 211 41.7
AUR62044023 Chenopodium quinoa HOM05D006162 ORTHO05D007627 1.1e-31 141.7 282 37.2
Cpa.g.sc72.51 Carica papaya HOM05D006162 ORTHO05D000563 1.8e-29 134.4 199 43.7
Lalb_Chr13g0296301 Lupinus albus HOM05D006162 ORTHO05D007627 5.5e-26 122.9 205 39.0
Nn5g27122 Nelumbo nucifera HOM05D006162 ORTHO05D007627 1.8e-24 117.9 208 36.5
Pp3c18_18540 Physcomitrium patens HOM05D006162 ORTHO05D007627 4.8e-22 109.8 241 32.4
Lj1g0005085 Lotus japonicus HOM05D006162 ORTHO05D007627 1.6e-20 104.8 112 51.8
CARHR247340 Cardamine hirsuta HOM05D006162 ORTHO05D007627 1.0e-19 102.1 102 51.0
SMO340G0295 Selaginella moellendorffii HOM05D006162 ORTHO05D007627 8.0e-17 92.4 387 25.3
arahy.Tifrunner.gnm1.ann1.PN8NU7 Arachis hypogaea HOM05D006162 ORTHO05D007627 1.4e-16 91.7 87 54.0
arahy.Tifrunner.gnm1.ann1.NX5YGM Arachis hypogaea HOM05D006162 ORTHO05D007627 4.0e-16 90.1 76 55.3
arahy.Tifrunner.gnm1.ann1.RXB70W Arachis hypogaea HOM05D005572 ORTHO05D007627 8.8e-16 89.0 149 37.6
Hma1.2p1_0220F.1_g092950 Hydrangea macrophylla HOM05D006162 ORTHO05D007627 9.8e-15 85.5 73 58.9
CBR_g28670 Chara braunii HOM05D006162 ORTHO05D007627 1.3e-14 85.1 224 26.3
arahy.Tifrunner.gnm1.ann1.1RFJ6T Arachis hypogaea HOM05D005572 ORTHO05D007627 2.8e-14 84.0 110 41.8
DCAR_011464 Daucus carota HOM05D006162 ORTHO05D007627 4.1e-13 80.1 73 56.2
HPP92_013626 Vanilla planifolia HOM05D003912 ORTHO05D004409 1.0e-08 65.5 127 36.2
Oeu049032.1 Olea europaea HOM05D003912 ORTHO05D004409 4.0e-08 63.5 123 36.6
AT1G04860 Arabidopsis thaliana HOM05D003912 ORTHO05D004409 6.8e-08 62.8 123 33.3
AL1G14580 Arabidopsis lyrata HOM05D003912 ORTHO05D004409 1.2e-07 62.0 76 43.4
Carub.0001s0410 Capsella rubella HOM05D003912 ORTHO05D004409 3.4e-07 60.5 123 33.3
MELO3C006310.2 Cucumis melo HOM05D003912 ORTHO05D004409 3.4e-07 60.5 157 28.7
BcaB03g13468 Brassica carinata HOM05D003912 ORTHO05D004409 4.4e-07 60.1 123 32.5
BcaC07g42158 Brassica carinata HOM05D003912 ORTHO05D004409 4.4e-07 60.1 123 31.7
Nitab4.5_0002260g0180 Nicotiana tabacum HOM05D003912 ORTHO05D004409 4.4e-07 60.1 123 34.1
Sp1g03710 Schrenkiella parvula HOM05D003912 ORTHO05D004409 5.7e-07 59.7 76 46.1
BolC8t52736H Brassica oleracea HOM05D003912 ORTHO05D004409 9.8e-07 58.9 123 30.9
ClCG05G003290 Citrullus lanatus HOM05D003912 ORTHO05D004409 9.8e-07 58.9 162 28.4
C08p52040 Brassica napus HOM05D003912 ORTHO05D004409 1.3e-06 58.5 123 30.9
Duzib212G0883 Durio zibethinus HOM05D003912 ORTHO05D004409 1.3e-06 58.5 125 32.8
Eucgr.H02776 Eucalyptus grandis HOM05D003912 ORTHO05D004409 1.7e-06 58.2 307 26.1
Nitab4.5_0007416g0010 Nicotiana tabacum HOM05D003912 ORTHO05D004409 1.7e-06 58.2 129 33.3
CARHR004250 Cardamine hirsuta HOM05D003912 ORTHO05D004409 2.2e-06 57.8 123 32.5
CsaV3_3G010910 Cucumis sativus L. HOM05D003912 ORTHO05D004409 2.2e-06 57.8 122 32.8
Nn1g07894 Nelumbo nucifera HOM05D003912 ORTHO05D004409 2.8e-06 57.4 123 35.0
Sabra17G0047100 Salix brachista HOM05D003912 ORTHO05D004409 2.8e-06 57.4 79 41.8
Thhalv10006716m.g Eutrema salsugineum HOM05D003912 ORTHO05D004409 3.7e-06 57.0 76 42.1
BcaC07g36874 Brassica carinata HOM05D003912 ORTHO05D004409 4.9e-06 56.6 123 31.7
C08p01540 Brassica napus HOM05D003912 ORTHO05D004409 4.9e-06 56.6 123 31.7
BolC8t46959H Brassica oleracea HOM05D003912 ORTHO05D004409 6.3e-06 56.2 123 31.7
Migut.N00208 Erythranthe guttata HOM05D003912 ORTHO05D004409 6.3e-06 56.2 72 40.3
Thecc.04G203100 Theobroma cacao HOM05D003912 ORTHO05D004409 6.3e-06 56.2 123 30.9
Aa31LG1G19870 Aethionema arabicum HOM05D003912 ORTHO05D004409 8.3e-06 55.8 73 39.7
TWI09G1517 Tripterygium wilfordii HOM05D003912 ORTHO05D004409 8.3e-06 55.8 73 43.8


User provided reference genes

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