Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 0.0e+00 1688.3 873 100.0
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 0.0e+00 1498.4 795 96.4
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 0.0e+00 1483.8 795 95.8
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 0.0e+00 1479.9 794 95.7
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 0.0e+00 1436.0 795 93.0
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 0.0e+00 1405.2 795 90.8
MD15G1140800 Malus domestica HOM05D003684 ORTHO05D004428 0.0e+00 1114.0 844 70.9
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 0.0e+00 1102.4 711 80.3
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 0.0e+00 1101.7 801 72.3
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 5.5e-308 1060.8 801 70.8
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 2.4e-303 1045.4 818 67.7
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 1.0e-301 1040.0 812 70.6
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 8.5e-301 1036.9 803 67.5
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 1.1e-300 1036.6 813 68.1
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 3.0e-298 1028.5 809 68.0
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 6.8e-298 1027.3 815 68.0
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 6.8e-298 1027.3 819 66.8
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 5.7e-297 1024.2 803 68.2
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 5.4e-295 1017.7 809 69.1
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 1.2e-294 1016.5 818 68.3
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 1.0e-293 1013.4 808 68.2
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 1.1e-292 1010.0 811 68.2
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 1.5e-292 1009.6 806 67.0
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 1.9e-292 1009.2 809 68.1
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 4.2e-292 1008.1 805 67.0
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 1.2e-291 1006.5 802 66.2
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.1e-291 1005.7 805 66.8
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 2.6e-289 998.8 805 67.1
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 1.7e-288 996.1 811 66.6
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 3.7e-288 995.0 808 65.5
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 1.6e-286 989.6 803 65.5
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 7.8e-286 987.3 806 65.9
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 2.3e-285 985.7 822 65.6
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 2.8e-283 978.8 806 66.3
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 3.1e-282 975.3 807 65.7
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 6.8e-282 974.2 809 64.5
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 4.9e-280 968.0 841 65.0
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 1.3e-277 959.9 807 64.4
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 3.9e-277 958.4 786 67.0
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 6.6e-277 957.6 807 64.2
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 1.1e-274 950.3 806 63.8
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 1.4e-274 949.9 828 62.9
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 2.4e-271 939.1 811 63.6
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 5.1e-269 931.4 812 62.9
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 1.2e-267 926.8 714 68.1
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 4.4e-265 918.3 804 62.8
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 7.1e-263 911.0 827 62.3
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 4.6e-262 908.3 821 62.2
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 2.6e-257 892.5 807 63.6
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 1.9e-255 886.3 826 59.9
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 3.1e-250 869.0 809 58.3
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 2.0e-249 866.3 809 58.2
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 5.8e-249 864.8 819 58.9
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 7.6e-249 864.4 802 60.3
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 3.8e-248 862.1 820 61.7
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 7.8e-246 854.4 856 55.4
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 9.6e-244 847.4 765 60.3
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 1.1e-239 833.9 809 58.6
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 3.0e-237 825.9 815 59.9
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 1.1e-234 817.4 838 56.1
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 1.4e-234 817.0 849 55.1
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 2.4e-234 816.2 865 55.3
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 1.2e-233 813.9 808 58.9
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 4.5e-233 812.0 806 56.7
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 1.7e-232 810.1 801 57.3
Peaxi162Scf00819g00027 Petunia axillaris HOM05D003684 ORTHO05D004428 4.9e-232 808.5 835 56.2
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 1.2e-230 803.9 681 65.1
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 1.9e-228 796.6 977 51.2
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 9.6e-228 794.3 809 59.1
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 9.6e-228 794.3 832 55.4
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 3.7e-227 792.3 910 52.2
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 2.6e-225 786.2 821 55.9
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 1.0e-224 784.3 824 55.0
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 3.0e-221 772.7 902 52.2
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 1.3e-219 767.3 909 50.7
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 2.8e-219 766.1 809 57.1
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 4.1e-218 762.3 917 50.2
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 5.1e-213 745.3 531 72.1
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 2.5e-212 743.0 912 49.3
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 3.1e-210 736.1 549 68.7
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 5.9e-209 731.9 776 54.6
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 5.0e-208 728.8 898 50.7
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 5.0e-208 728.8 893 51.0
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 9.4e-207 724.5 900 50.9
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 2.1e-206 723.4 909 50.4
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 2.7e-206 723.0 921 48.5
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 1.8e-205 720.3 799 54.6
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 2.0e-204 716.8 804 52.1
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 1.7e-203 713.8 474 77.4
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 3.7e-203 712.6 760 54.6
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 8.2e-203 711.4 1042 45.4
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 1.1e-202 711.1 811 52.9
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 3.5e-201 706.1 808 53.1
AUR62006943 Chenopodium quinoa HOM05D003684 ORTHO05D004428 5.9e-201 705.3 817 53.2
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 5.9e-201 705.3 808 53.5
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 5.0e-200 702.2 808 51.0
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 7.2e-199 698.4 816 52.9
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 5.2e-197 692.2 789 51.0
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 1.1e-196 691.0 908 49.6
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 1.8e-194 683.7 908 49.2
Potri.T044400 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.2e-190 671.0 627 60.3
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 1.6e-190 670.6 794 50.5
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 6.8e-189 665.2 794 52.9
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 2.0e-188 663.7 807 49.7
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 5.0e-184 649.0 833 49.3
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 5.5e-183 645.6 808 50.4
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 9.5e-175 618.2 405 75.6
Cpa.g.sc138.52 Carica papaya HOM05D003684 ORTHO05D004428 1.8e-170 604.0 360 80.6
Sabra19G0000700 Salix brachista HOM05D003684 ORTHO05D004428 2.3e-168 597.0 351 82.3
Sabra19G0012100 Salix brachista HOM05D003684 ORTHO05D004428 4.1e-162 576.2 351 79.8
Sc09g0001960 Simmondsia chinensis HOM05D003684 ORTHO05D004428 7.0e-162 575.5 335 82.1
Nn1g08436 Nelumbo nucifera HOM05D003684 ORTHO05D004428 2.1e-158 563.9 659 51.0
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 8.1e-158 562.0 1082 38.4
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 1.7e-155 554.3 799 46.1
SalBow8G3946 Salvia bowleyana HOM05D003684 ORTHO05D004428 1.1e-151 541.6 397 67.8
BcaB08g37259 Brassica carinata HOM05D003684 ORTHO05D004428 1.5e-148 531.2 442 63.8
BraA10t44878Z Brassica rapa HOM05D003684 ORTHO05D004428 4.9e-147 526.2 354 73.2
C09p68560 Brassica napus HOM05D003684 ORTHO05D004428 1.5e-143 514.6 376 68.9
Cc07_g19760 Coffea canephora HOM05D003684 ORTHO05D004428 1.8e-141 507.7 335 72.2
MSTRG.2470 Avicennia marina HOM05D003684 ORTHO05D004428 3.8e-139 500.0 608 49.7
ATR1136G078 Amborella trichopoda HOM05D003684 ORTHO05D004428 6.4e-139 499.2 345 69.6
Sc06g0005260 Simmondsia chinensis HOM05D003684 ORTHO05D004428 3.2e-138 496.9 502 54.4
Actinidia36575 Actinidia chinensis HOM05D003684 ORTHO05D004428 5.1e-136 489.6 405 64.4
A10p28300 Brassica napus HOM05D003684 ORTHO05D004428 3.3e-135 486.9 379 65.4
HPP92_003711 Vanilla planifolia HOM05D003684 ORTHO05D004428 2.9e-131 473.8 646 46.1
DCAR_019948 Daucus carota HOM05D003684 ORTHO05D004428 8.4e-131 472.2 406 58.6
BolC9t59599H Brassica oleracea HOM05D003684 ORTHO05D004428 1.2e-129 468.4 374 65.0
Oeu034404.1 Olea europaea HOM05D003684 ORTHO05D004428 7.9e-129 465.7 291 79.7
Lj2C616G3 Lonicera japonica HOM05D003684 ORTHO05D004428 7.4e-127 459.1 315 74.3
Haze_19362 Corylus avellana HOM05D003684 ORTHO05D004428 1.6e-126 458.0 463 59.2
Pp3c3_32800 Physcomitrium patens HOM05D003684 ORTHO05D004428 4.2e-122 443.4 422 54.0
SMO356G0426 Selaginella moellendorffii HOM05D003684 ORTHO05D004428 8.1e-118 429.1 421 55.1
MBI03_g18673_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 1.8e-117 427.9 270 77.8
Pp3c8_5360 Physcomitrium patens HOM05D003684 ORTHO05D004428 2.0e-116 424.5 439 52.6
HPP92_007640 Vanilla planifolia HOM05D003684 ORTHO05D004428 7.1e-114 416.0 683 40.4
Pp3c3_30960 Physcomitrium patens HOM05D003684 ORTHO05D004428 4.8e-110 403.3 439 49.9
Potri.018G145546 Populus trichocarpa HOM05D003684 ORTHO05D004428 3.5e-105 387.1 241 80.5
AagrBONN_evm.TU.Sc2ySwM_228.5259 Anthoceros agrestis HOM05D003684 ORTHO05D004428 6.7e-104 382.9 432 47.7
Mapoly0050s0019 Marchantia polymorpha HOM05D003684 ORTHO05D004428 1.9e-103 381.3 517 45.3
MELO3C023205.2 Cucumis melo HOM05D003684 ORTHO05D004428 2.2e-102 377.9 451 49.4
SGA_v2.0_scaffold51G18855 Striga asiatica HOM05D003684 ORTHO05D004428 5.1e-96 356.7 320 57.2
Cpa.g.sc138.51 Carica papaya HOM05D003684 ORTHO05D004428 9.7e-95 352.4 363 57.0
Sabra19G0011700 Salix brachista HOM05D003684 ORTHO05D004428 4.5e-92 343.6 460 48.7
Lj2C616T2 Lonicera japonica HOM05D003684 ORTHO05D004428 2.9e-91 340.9 574 49.1
CDE02G3206 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 4.7e-89 333.6 604 40.6
Oeu034403.1 Olea europaea HOM05D003684 ORTHO05D004428 8.8e-88 329.3 443 46.7
PGSC0003DMG400023330 Solanum tuberosum HOM05D003684 ORTHO05D004428 8.8e-88 329.3 457 45.5
CSS0015943 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.7e-83 315.1 478 48.5
Potri.018G145542 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.7e-81 307.8 350 53.4
Ciclev10026566m.g Citrus clementina HOM05D003684 ORTHO05D004428 2.0e-79 301.6 181 81.8
DCAR_009622 Daucus carota HOM05D003684 ORTHO05D004428 7.0e-77 293.1 415 47.7
CBR_g645 Chara braunii HOM05D003684 ORTHO05D004428 1.3e-75 288.9 407 40.5
CSS0049380 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 4.2e-74 283.9 257 60.7
MSTRG.2469 Avicennia marina HOM05D003684 ORTHO05D004428 1.4e-72 278.9 189 74.1
CDE02G3840 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 2.7e-65 254.6 177 71.2
MCO05G109 Micromonas commoda HOM05D003684 ORTHO05D004428 6.1e-65 253.4 379 39.8
Cc07_g19750 Coffea canephora HOM05D003684 ORTHO05D004428 8.6e-59 233.0 185 63.2
HanXRQChr01g0009441 Helianthus annuus HOM05D003684 ORTHO05D004428 1.9e-58 231.9 183 65.6
Cre03.g182600 Chlamydomonas reinhardtii HOM05D003684 ORTHO05D004428 3.3e-58 231.1 343 38.5
Sc09g0001970 Simmondsia chinensis HOM05D003684 ORTHO05D004428 8.0e-57 226.5 469 41.4
MBI01_g42406_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 5.7e-55 220.3 147 72.8
ATR1136G068 Amborella trichopoda HOM05D003684 ORTHO05D004428 4.1e-53 214.2 467 36.8
Aqoxy391s001 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 3.4e-47 194.5 101 91.1
Mapoly0024s0027 Marchantia polymorpha HOM05D003684 ORTHO05D004428 3.7e-46 191.0 504 33.7
PRCOL_00004531 Prasinoderma coloniale HOM05D003684 ORTHO05D028742 2.0e-44 185.3 324 35.5
Cc07_g19740 Coffea canephora HOM05D003684 ORTHO05D004428 8.1e-41 173.3 140 60.7
Cc00_g24540 Coffea canephora HOM05D003684 ORTHO05D004428 7.5e-39 166.8 85 87.1
TPR.G16635 Trifolium pratense HOM05D003684 ORTHO05D004428 4.6e-36 157.5 216 50.0
Sabra01G0044800 Salix brachista HOM05D003684 ORTHO05D004428 1.5e-23 115.9 65 84.6
Lsat_1_v5_gn_6_89680 Lactuca sativa HOM05D003684 ORTHO05D004428 2.9e-22 111.7 137 50.4
HanXRQChr17g0567611 Helianthus annuus HOM05D003684 ORTHO05D004428 3.8e-22 111.3 63 84.1
CSS0003103 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.4e-21 109.4 66 78.8
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.4e-21 109.4 127 52.0
SEGI_34739 Sequoiadendron giganteum HOM05D003684 ORTHO05D004428 1.1e-18 99.8 65 73.8
CSS0033146 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 9.0e-16 90.1 58 67.2
EL10Ac2g03383 Beta vulgaris HOM05D000039 ORTHO05D001729 1.0e-11 76.6 76 56.6
Potri.018G145552 Populus trichocarpa HOM05D003684 ORTHO05D004428 8.7e-11 73.6 51 80.4
arahy.Tifrunner.gnm1.ann1.32AA53 Arachis hypogaea HOM05D003684 ORTHO05D001254 1.5e-10 72.8 52 65.4
Ciclev10003442m.g Citrus clementina HOM05D003684 ORTHO05D004428 3.3e-10 71.6 47 74.5
EL10Ac9g22716 Beta vulgaris HOM05D003684 ORTHO05D004428 8.1e-09 67.0 32 87.5
Ca_09910_v3 Cicer arietinum L. HOM05D003095 ORTHO05D003517 1.1e-08 66.6 79 57.0
Ciclev10003579m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.7e-06 59.3 56 57.1


User provided reference genes

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