Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 8.6e-196 686.8 348 100.0
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 3.8e-127 458.8 300 79.0
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 3.8e-127 458.8 305 80.7
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 1.0e-119 434.1 344 68.6
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 3.8e-119 432.2 349 69.9
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 5.6e-110 401.7 345 67.0
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 1.4e-92 344.0 331 55.9
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 6.0e-80 302.0 330 51.2
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 3.0e-79 299.7 345 48.4
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 8.6e-79 298.1 303 53.5
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 8.6e-79 298.1 347 47.8
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 1.9e-78 297.0 313 51.8
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 3.3e-78 296.2 306 50.7
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 2.1e-77 293.5 316 50.3
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 4.7e-77 292.4 214 67.8
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 1.4e-76 290.8 335 49.3
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 2.4e-76 290.0 336 50.6
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 4.0e-76 289.3 299 51.2
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 4.0e-76 289.3 336 50.3
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 4.0e-76 289.3 304 51.3
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 2.0e-75 287.0 309 50.5
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 7.6e-75 285.0 309 50.5
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 9.9e-75 284.6 247 59.9
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 1.7e-74 283.9 309 49.8
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 2.9e-74 283.1 330 48.8
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 3.8e-74 282.7 358 47.5
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 6.4e-74 282.0 308 49.4
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 8.4e-74 281.6 327 46.2
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 1.1e-73 281.2 306 49.0
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 4.2e-73 279.3 297 50.2
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 7.1e-73 278.5 294 49.7
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 9.3e-73 278.1 299 49.8
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 2.7e-72 276.6 329 45.3
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 2.7e-72 276.6 319 48.6
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 4.6e-72 275.8 297 48.1
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 7.8e-72 275.0 329 47.1
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 1.3e-71 274.2 315 47.0
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 2.5e-70 270.0 297 48.1
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 3.3e-70 269.6 298 49.7
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 5.6e-70 268.9 310 46.5
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 9.6e-70 268.1 300 48.3
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 1.3e-69 267.7 296 48.6
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 2.8e-69 266.5 297 48.5
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 2.8e-69 266.5 297 48.1
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 4.8e-69 265.8 297 48.1
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 6.2e-69 265.4 295 49.2
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 6.2e-69 265.4 295 49.2
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 8.1e-69 265.0 300 48.0
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 8.1e-69 265.0 319 47.0
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 1.4e-68 264.2 299 44.8
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.4e-68 264.2 303 47.5
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 2.0e-67 260.4 297 47.8
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 5.8e-67 258.8 301 46.5
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 5.8e-67 258.8 223 56.5
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 9.9e-67 258.1 319 44.8
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 1.3e-66 257.7 296 46.6
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 1.1e-65 254.6 315 45.7
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 1.1e-65 254.6 300 49.3
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 1.1e-65 254.6 298 46.3
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 3.2e-65 253.1 214 57.9
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 7.1e-65 251.9 311 43.7
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.6e-64 250.8 214 57.0
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 1.0e-63 248.1 214 56.5
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 1.0e-63 248.1 305 45.9
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 3.0e-63 246.5 299 46.8
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 3.9e-63 246.1 330 42.4
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 8.7e-63 245.0 311 41.8
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 1.1e-62 244.6 222 55.0
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 1.9e-62 243.8 323 43.3
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 3.3e-62 243.0 214 56.5
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 3.3e-62 243.0 214 53.7
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 9.6e-62 241.5 309 44.7
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 1.6e-61 240.7 214 55.1
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 2.1e-61 240.4 323 42.7
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 4.8e-61 239.2 299 44.5
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 4.8e-61 239.2 214 56.5
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 6.9e-60 235.3 313 40.6
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 9.0e-60 235.0 313 41.5
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 9.0e-60 235.0 308 42.5
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 4.5e-59 232.6 313 41.9
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 4.5e-59 232.6 313 41.9
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 4.5e-59 232.6 306 41.8
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 5.8e-59 232.3 313 41.2
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 5.8e-59 232.3 299 43.1
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 7.6e-59 231.9 304 42.4
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 1.7e-58 230.7 308 42.2
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 4.9e-58 229.2 301 42.9
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 4.6e-56 222.6 315 41.6
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 4.6e-56 222.6 297 41.8
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 2.3e-55 220.3 241 50.6
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 9.6e-54 214.9 297 41.1
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 2.0e-51 207.2 304 42.4
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 1.4e-49 201.1 291 40.2
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 1.4e-49 201.1 286 40.9
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 1.9e-49 200.7 182 54.9
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.2e-48 198.0 186 52.7
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 2.7e-48 196.8 192 52.1
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 6.0e-48 195.7 293 36.9
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 3.9e-47 193.0 187 50.8
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 3.3e-46 189.9 327 36.4
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 2.8e-45 186.8 241 44.8
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 1.4e-44 184.5 218 41.7
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 1.2e-43 181.4 306 35.6
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 2.6e-43 180.3 213 42.7
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 3.4e-43 179.9 114 72.8
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.7e-42 177.6 110 69.1
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 1.4e-41 174.5 277 40.4
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 1.9e-41 174.1 249 38.6
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 3.2e-41 173.3 110 71.8
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 7.2e-41 172.2 183 51.9
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 2.1e-40 170.6 112 67.0
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 8.7e-39 165.2 177 50.8
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 5.7e-38 162.5 110 67.3
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 5.9e-35 152.5 162 50.6
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 2.7e-32 143.7 139 52.5
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 2.2e-29 134.0 151 48.3
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 7.7e-27 125.6 72 73.6
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.7e-26 124.4 206 38.3
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 8.8e-23 112.1 215 28.4
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 5.7e-22 109.4 110 50.9
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 5.7e-22 109.4 63 76.2
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 1.4e-20 104.8 76 60.5
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 7.7e-19 99.0 142 40.1
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 4.0e-15 86.7 155 38.1
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 2.6e-14 84.0 124 37.1
HanXRQChr09g0261041 Helianthus annuus HOM05D005815 ORTHO05D007023 2.8e-13 80.5 69 56.5
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 6.3e-13 79.3 85 49.4
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 2.7e-11 73.9 163 33.7
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 4.5e-11 73.2 53 66.0
arahy.Tifrunner.gnm1.ann1.24D4KD Arachis hypogaea HOM05D005815 ORTHO05D007023 1.0e-10 72.0 49 67.3
MD03G1168900 Malus domestica HOM05D005815 ORTHO05D007023 4.7e-08 63.2 80 47.5
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 8.8e-07 58.9 32 78.1


User provided reference genes

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