Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G3337 Fragaria x ananassa HOM05D001876 ORTHO05D002002 2.1e-225 785.4 415 100.0
FvH4_3g42840 Fragaria vesca HOM05D001876 ORTHO05D002002 4.6e-119 432.2 420 61.9
FvH4_3g41980 Fragaria vesca HOM05D001876 ORTHO05D002002 1.4e-59 234.6 309 54.4
FAN11G3885 Fragaria x ananassa HOM05D001876 ORTHO05D002002 1.4e-59 234.6 309 54.4
RcHm_v2.0_Chr5g0075171 Rosa chinensis HOM05D001876 ORTHO05D002002 1.4e-59 234.6 299 54.5
FAN16G1749 Fragaria x ananassa HOM05D001876 ORTHO05D002002 4.5e-58 229.6 309 53.7
FAN25G1930 Fragaria x ananassa HOM05D001876 ORTHO05D002002 4.5e-58 229.6 309 54.4
FAN21G2243 Fragaria x ananassa HOM05D001876 ORTHO05D002002 2.2e-57 227.3 308 53.6
Prupe.6G032100 Prunus persica HOM05D001876 ORTHO05D002002 1.8e-46 191.0 299 46.5
FAN11G3414 Fragaria x ananassa HOM05D001876 ORTHO05D002002 5.7e-45 186.0 195 62.1
FAN21G1841 Fragaria x ananassa HOM05D001876 ORTHO05D002002 7.5e-45 185.7 129 83.7
FvH4_3g42880 Fragaria vesca HOM05D001876 ORTHO05D002002 1.7e-44 184.5 195 61.5
FAN12G4233 Fragaria x ananassa HOM05D001876 ORTHO05D045887 1.4e-43 181.4 251 52.2
MD03G1039800 Malus domestica HOM05D001876 ORTHO05D002002 2.4e-43 180.6 298 45.3
MD11G1041300 Malus domestica HOM05D001876 ORTHO05D002002 2.4e-43 180.6 297 45.1
FvH4_7g20220 Fragaria vesca HOM05D001876 ORTHO05D002002 8.5e-41 172.2 210 55.7
RcHm_v2.0_Chr4g0407801 Rosa chinensis HOM05D000005 ORTHO05D000012 1.8e-35 154.5 259 46.3
RcHm_v2.0_Chr4g0389201 Rosa chinensis HOM05D001876 ORTHO05D002002 2.4e-35 154.1 148 63.5
QL08p001531 Quercus lobata HOM05D001876 ORTHO05D002002 9.1e-35 152.1 303 42.2
Cfa016942 Carpinus fangiana HOM05D001876 ORTHO05D002002 2.0e-34 151.0 304 40.1
CiPaw.12G141800 Carya illinoinensis HOM05D001876 ORTHO05D002002 2.0e-34 151.0 307 40.7
FvH4_4g01880 Fragaria vesca HOM05D001876 ORTHO05D002002 4.5e-34 149.8 148 62.8
FvH4_4g01920 Fragaria vesca HOM05D065299 ORTHO05D196952 2.9e-33 147.1 187 56.1
Haze_09897 Corylus avellana HOM05D001876 ORTHO05D002002 6.5e-33 146.0 304 39.5
Manes.01G005000 Manihot esculenta HOM05D001876 ORTHO05D002002 4.2e-32 143.3 296 39.5
Nn1g07691 Nelumbo nucifera HOM05D001876 ORTHO05D002002 1.2e-31 141.7 299 39.5
Glyma.18G072400 Glycine max HOM05D001876 ORTHO05D002002 2.8e-31 140.6 304 40.1
Lj1A897T44 Lonicera japonica HOM05D001876 ORTHO05D002002 1.8e-30 137.9 299 36.5
Duzib170G0551 Durio zibethinus HOM05D001876 ORTHO05D002002 4.0e-30 136.7 302 37.1
Phvul.006G060500 Phaseolus vulgaris HOM05D001876 ORTHO05D002002 8.8e-30 135.6 304 38.5
Dinv40896 Davidia involucrata HOM05D001876 ORTHO05D002002 1.5e-29 134.8 299 39.1
Dinv10376 Davidia involucrata HOM05D001876 ORTHO05D002002 3.4e-29 133.7 323 37.2
TAR626G0018 Trochodendron aralioides HOM05D001876 ORTHO05D002002 9.8e-29 132.1 297 38.4
Actinidia03661 Actinidia chinensis HOM05D001876 ORTHO05D002002 1.7e-28 131.3 303 37.3
Gorai.004G034200 Gossypium raimondii HOM05D001876 ORTHO05D002002 3.7e-28 130.2 302 36.1
CANSAT11G0621 Cannabis sativa HOM05D001876 ORTHO05D002002 4.9e-28 129.8 300 39.3
Gohir.D08G036200 Gossypium hirsutum HOM05D001876 ORTHO05D002002 6.3e-28 129.4 302 35.8
vmacro11629 Vaccinium macrocarpon HOM05D001876 ORTHO05D002002 8.3e-28 129.0 304 37.8
Nitab4.5_0000152g0190 Nicotiana tabacum HOM05D001876 ORTHO05D002002 1.8e-27 127.9 318 35.8
Thecc.07G005200 Theobroma cacao HOM05D001876 ORTHO05D002002 2.4e-27 127.5 301 36.5
Gohir.A08G025700 Gossypium hirsutum HOM05D001876 ORTHO05D002002 4.1e-27 126.7 302 35.8
Nitab4.5_0001303g0100 Nicotiana tabacum HOM05D001876 ORTHO05D002002 7.0e-27 125.9 318 35.5
Rhsim06G0234000 Rhododendron simsii HOM05D001876 ORTHO05D002002 9.2e-27 125.6 301 36.9
MBI15_g00880_MAGBIO Magnolia biondii HOM05D001876 ORTHO05D002002 1.6e-26 124.8 318 35.5
Hma1.2p1_0193F.1_g084140 Hydrangea macrophylla HOM05D001876 ORTHO05D002002 2.7e-26 124.0 356 33.1
Hma1.2p1_2995F.1_g331450 Hydrangea macrophylla HOM05D001876 ORTHO05D002002 2.7e-26 124.0 356 33.1
Duzib268G1004 Durio zibethinus HOM05D001876 ORTHO05D002002 3.5e-26 123.6 297 37.4
ClCG10G004140 Citrullus lanatus HOM05D001876 ORTHO05D002002 2.3e-25 120.9 301 35.2
Glyma.08G337200 Glycine max HOM05D001876 ORTHO05D002002 2.3e-25 120.9 300 37.3
CSS0030826 Camellia sinensis var. sinensis HOM05D001876 ORTHO05D002002 2.9e-25 120.6 312 35.9
Atru.chr2.3845 Acer truncatum HOM05D001876 ORTHO05D002002 3.8e-25 120.2 299 36.8
FvH4_3g42790 Fragaria vesca HOM05D001876 ORTHO05D002002 2.5e-24 117.5 120 62.5
Medtr3g061160 Medicago truncatula HOM05D001876 ORTHO05D002002 7.3e-24 115.9 304 37.5
Dinv06828 Davidia involucrata HOM05D001876 ORTHO05D002002 9.5e-24 115.5 297 36.0
Cpa.g.sc12.90 Carica papaya HOM05D001876 ORTHO05D002002 1.2e-23 115.2 305 35.4
VMungo0540G1408 Vigna mungo HOM05D001876 ORTHO05D002002 1.2e-23 115.2 303 35.6
SalBow8G1221 Salvia bowleyana HOM05D001876 ORTHO05D002002 1.6e-23 114.8 302 34.4
SalBow8G5543 Salvia bowleyana HOM05D001876 ORTHO05D002002 1.6e-23 114.8 302 34.4
Nn1g08429 Nelumbo nucifera HOM05D001876 ORTHO05D002002 2.1e-23 114.4 303 35.0
Potri.001G469500 Populus trichocarpa HOM05D001876 ORTHO05D002002 2.1e-23 114.4 304 35.9
arahy.Tifrunner.gnm1.ann1.LQ166S Arachis hypogaea HOM05D001876 ORTHO05D002002 4.7e-23 113.2 304 37.5
Manes.05G206100 Manihot esculenta HOM05D001876 ORTHO05D002002 4.7e-23 113.2 301 34.6
Sabra16G0318400 Salix brachista HOM05D001876 ORTHO05D002002 6.1e-23 112.8 303 35.3
Sed0022328 Sechium edule HOM05D001876 ORTHO05D002002 8.0e-23 112.5 296 35.5
Peaxi162Scf00006g00717 Petunia axillaris HOM05D001876 ORTHO05D002002 1.8e-22 111.3 317 33.8
Rhsim04G0009400 Rhododendron simsii HOM05D001876 ORTHO05D002002 1.8e-22 111.3 290 36.2
TAR629G2148 Trochodendron aralioides HOM05D001876 ORTHO05D002002 1.8e-22 111.3 307 35.2
FAN21G3992 Fragaria x ananassa HOM05D001876 ORTHO05D002002 2.3e-22 110.9 143 52.4
arahy.Tifrunner.gnm1.ann1.ADA7T8 Arachis hypogaea HOM05D001876 ORTHO05D002002 4.0e-22 110.2 304 37.2
vmacro09608 Vaccinium macrocarpon HOM05D001876 ORTHO05D002002 5.2e-22 109.8 288 34.4
Duzib213G0425 Durio zibethinus HOM05D001876 ORTHO05D002002 1.2e-21 108.6 303 34.3
CsaV3_3G003970 Cucumis sativus L. HOM05D001876 ORTHO05D002002 1.5e-21 108.2 294 34.7
GSVIVG01014783001 Vitis vinifera HOM05D001876 ORTHO05D002002 2.0e-21 107.8 273 35.9
Cc05_g15500 Coffea canephora HOM05D001876 ORTHO05D002002 2.6e-21 107.5 288 36.5
FvH4_5g06810 Fragaria vesca HOM05D013306 ORTHO05D046474 7.5e-21 105.9 108 61.1
TWI63G1743 Tripterygium wilfordii HOM05D001876 ORTHO05D002002 7.5e-21 105.9 320 31.9
Lj6g0010416 Lotus japonicus HOM05D001876 ORTHO05D002002 1.7e-20 104.8 297 34.3
Peaxi162Scf00232g00036 Petunia axillaris HOM05D001876 ORTHO05D002002 1.7e-20 104.8 317 34.1
TWI39G0122 Tripterygium wilfordii HOM05D001876 ORTHO05D002002 1.7e-20 104.8 281 37.0
Cpa.g.sc27.194 Carica papaya HOM05D001876 ORTHO05D002002 2.2e-20 104.4 298 33.9
Migut.H01726 Erythranthe guttata HOM05D001876 ORTHO05D002002 2.9e-20 104.0 256 36.7
TWI38G1429 Tripterygium wilfordii HOM05D001876 ORTHO05D002002 3.7e-20 103.6 303 34.0
AUR62035638 Chenopodium quinoa HOM05D001876 ORTHO05D002002 4.9e-20 103.2 303 34.7
Oeu026625.1 Olea europaea HOM05D001876 ORTHO05D002002 6.4e-20 102.8 251 38.2
Sabra16G0007100 Salix brachista HOM05D001876 ORTHO05D002002 6.4e-20 102.8 293 35.2
COL.COLO4_07762 Corchorus olitorius HOM05D001876 ORTHO05D002002 8.3e-20 102.4 293 34.1
Lalb_Chr20g0115301 Lupinus albus HOM05D001876 ORTHO05D002002 1.1e-19 102.1 298 35.9
Ciclev10007261m.g Citrus clementina HOM05D001876 ORTHO05D002002 1.4e-19 101.7 268 36.2
MELO3C014084.2 Cucumis melo HOM05D001876 ORTHO05D002002 1.8e-19 101.3 294 34.0
Nitab4.5_0000611g0240 Nicotiana tabacum HOM05D001876 ORTHO05D002002 1.8e-19 101.3 293 34.5
Actinidia30365 Actinidia chinensis HOM05D001876 ORTHO05D002002 3.2e-19 100.5 303 33.7
FvH4_7g10090 Fragaria vesca HOM05D013306 ORTHO05D035584 7.0e-19 99.4 110 57.3
FAN06G0659 Fragaria x ananassa HOM05D001876 ORTHO05D035584 7.0e-19 99.4 110 57.3
FAN08G2706 Fragaria x ananassa HOM05D013306 ORTHO05D046474 7.0e-19 99.4 107 58.9
Manes.08G015400 Manihot esculenta HOM05D001876 ORTHO05D002002 9.2e-19 99.0 329 31.0
Sed0017004 Sechium edule HOM05D001876 ORTHO05D002002 9.2e-19 99.0 301 32.6
Potri.011G166400 Populus trichocarpa HOM05D001876 ORTHO05D002002 1.6e-18 98.2 299 32.8
QL05p066377 Quercus lobata HOM05D001876 ORTHO05D002002 2.0e-18 97.8 298 32.2
Thecc.06G243400 Theobroma cacao HOM05D001876 ORTHO05D002002 2.0e-18 97.8 319 30.7
TPR.G17949 Trifolium pratense HOM05D001876 ORTHO05D002002 3.5e-18 97.1 304 33.9
Actinidia10583 Actinidia chinensis HOM05D001876 ORTHO05D002002 5.9e-18 96.3 278 37.8
Nitab4.5_0001622g0060 Nicotiana tabacum HOM05D001876 ORTHO05D002002 5.9e-18 96.3 293 34.1
Sopen07g034150 Solanum pennellii HOM05D001876 ORTHO05D002002 5.9e-18 96.3 284 33.5
SGA_v2.0_scaffold8G04429 Striga asiatica HOM05D001876 ORTHO05D002002 5.9e-18 96.3 316 32.3
FAN03G1480 Fragaria x ananassa HOM05D013306 ORTHO05D035584 1.0e-17 95.5 110 52.7
arahy.Tifrunner.gnm1.ann1.49CTIT Arachis hypogaea HOM05D001876 ORTHO05D002002 1.3e-17 95.1 304 34.9
CiPaw.09G112100 Carya illinoinensis HOM05D001876 ORTHO05D002002 3.0e-17 94.0 296 32.4
EL10Ac4g07507 Beta vulgaris HOM05D001876 ORTHO05D002002 5.0e-17 93.2 255 34.9
Ciclev10014046m.g Citrus clementina HOM05D001876 ORTHO05D002002 8.6e-17 92.4 296 33.4
Psat5g163240 Pisum sativum HOM05D001876 ORTHO05D002002 8.6e-17 92.4 299 33.4
TAR627G0307 Trochodendron aralioides HOM05D001876 ORTHO05D002002 1.1e-16 92.0 294 33.3
Ca_14851_v3 Cicer arietinum L. HOM05D001876 ORTHO05D002002 3.3e-16 90.5 299 33.8
COL.COLO4_31961 Corchorus olitorius HOM05D001876 ORTHO05D002002 3.3e-16 90.5 294 31.0
Cfa000007 Carpinus fangiana HOM05D001876 ORTHO05D002002 4.3e-16 90.1 296 30.4
Eucgr.E04228 Eucalyptus grandis HOM05D001876 ORTHO05D002002 7.3e-16 89.4 286 31.5
ECA240G3156 Erigeron canadensis HOM05D001876 ORTHO05D002002 9.5e-16 89.0 308 31.2
MBI14_g30654_MAGBIO Magnolia biondii HOM05D001876 ORTHO05D002002 2.8e-15 87.4 297 30.3
Manes.09G072500 Manihot esculenta HOM05D001876 ORTHO05D002002 2.8e-15 87.4 319 31.3
MSTRG.14512 Avicennia marina HOM05D001876 ORTHO05D002002 3.6e-15 87.0 306 32.7
DCAR_017598 Daucus carota HOM05D001876 ORTHO05D002002 3.6e-15 87.0 313 30.0
Duzib192G0376 Durio zibethinus HOM05D001876 ORTHO05D002002 3.6e-15 87.0 296 30.4
Haze_07052 Corylus avellana HOM05D001876 ORTHO05D002002 4.7e-15 86.7 296 30.4
ATR0751G014 Amborella trichopoda HOM05D001876 ORTHO05D002002 8.0e-15 85.9 289 32.9
DCAR_013771 Daucus carota HOM05D001876 ORTHO05D002002 1.8e-14 84.7 293 32.4
Sabra06G0001500 Salix brachista HOM05D001876 ORTHO05D002002 1.8e-14 84.7 306 31.0
FvH4_3g41972 Fragaria vesca HOM05D001876 ORTHO05D002002 2.3e-14 84.3 132 45.5
arahy.Tifrunner.gnm1.ann1.SQBY3A Arachis hypogaea HOM05D001876 ORTHO05D002002 4.0e-14 83.6 304 33.6
Phvul.006G135300 Phaseolus vulgaris HOM05D001876 ORTHO05D002002 4.0e-14 83.6 285 31.6
PSO675G0267 Papaver somniferum HOM05D001876 ORTHO05D002002 8.9e-14 82.4 317 31.5
PSO541G5418 Papaver somniferum HOM05D001876 ORTHO05D002002 1.2e-13 82.0 317 30.6
Sc20g0000100 Simmondsia chinensis HOM05D001876 ORTHO05D002002 1.2e-13 82.0 301 30.2
Duzib235G0083 Durio zibethinus HOM05D001876 ORTHO05D002002 2.6e-13 80.9 463 25.7
SGA_v2.0_scaffold42G15938 Striga asiatica HOM05D001876 ORTHO05D002002 2.6e-13 80.9 299 30.4
arahy.Tifrunner.gnm1.ann1.M7DLA2 Arachis hypogaea HOM05D001876 ORTHO05D002002 3.4e-13 80.5 292 31.5
Eucgr.F02007 Eucalyptus grandis HOM05D001876 ORTHO05D002002 4.4e-13 80.1 288 34.4
Gohir.A09G067600 Gossypium hirsutum HOM05D001876 ORTHO05D002002 4.4e-13 80.1 289 31.5
HanXRQChr13g0409211 Helianthus annuus HOM05D001876 ORTHO05D002002 9.8e-13 79.0 295 31.5
Gorai.006G081900 Gossypium raimondii HOM05D001876 ORTHO05D002002 1.3e-12 78.6 297 31.6
Oeu005542.2 Olea europaea HOM05D001876 ORTHO05D002002 2.2e-12 77.8 245 32.7
Hund01842 Selenicereus undatus HOM05D001876 ORTHO05D002002 2.2e-12 77.8 277 30.3
CANSAT56G1356 Cannabis sativa HOM05D001876 ORTHO05D002002 2.9e-12 77.4 311 29.9
Oeu062674.2 Olea europaea HOM05D001876 ORTHO05D002002 3.7e-12 77.0 242 32.2
Gohir.A09G067700 Gossypium hirsutum HOM05D001876 ORTHO05D002002 4.9e-12 76.6 296 31.4
arahy.Tifrunner.gnm1.ann1.EXSC1B Arachis hypogaea HOM05D001876 ORTHO05D002002 8.3e-12 75.9 299 30.4
Ah.14g085010 Amaranthus hybridus HOM05D001876 ORTHO05D002002 1.1e-11 75.5 322 28.0
Gohir.D09G067300 Gossypium hirsutum HOM05D001876 ORTHO05D002002 1.4e-11 75.1 289 29.8
MBI15_g35676_MAGBIO Magnolia biondii HOM05D001876 ORTHO05D002002 1.9e-11 74.7 317 30.0
THA.LOC104810297 Tarenaya hassleriana HOM05D001876 ORTHO05D002002 5.4e-11 73.2 294 28.2
FAN25G2172 Fragaria x ananassa HOM05D001876 ORTHO05D002002 1.2e-10 72.0 75 54.7
Actinidia00837 Actinidia chinensis HOM05D001876 ORTHO05D002002 1.6e-10 71.6 110 49.1
Sed0006897 Sechium edule HOM05D001876 ORTHO05D002002 1.6e-10 71.6 258 31.8
Sc07g0002250 Simmondsia chinensis HOM05D001876 ORTHO05D002002 2.0e-10 71.2 310 30.3
Ah.14g084980 Amaranthus hybridus HOM05D001876 ORTHO05D002002 3.5e-10 70.5 273 30.4
Gohir.D09G067400 Gossypium hirsutum HOM05D001876 ORTHO05D002002 6.0e-10 69.7 268 31.7
Lsat_1_v5_gn_9_89380 Lactuca sativa HOM05D001876 ORTHO05D002002 6.0e-10 69.7 275 31.6
Gorai.006G081700 Gossypium raimondii HOM05D001876 ORTHO05D002002 7.8e-10 69.3 290 30.0
Solyc10g005920.4 Solanum lycopersicum HOM05D001876 ORTHO05D002002 1.0e-09 68.9 157 35.0
TPR.G10492 Trifolium pratense HOM05D001876 ORTHO05D002002 1.3e-09 68.6 266 30.8
CiPaw.10G084200 Carya illinoinensis HOM05D001876 ORTHO05D002002 1.7e-09 68.2 297 29.0
FAN01G0741 Fragaria x ananassa HOM05D001876 ORTHO05D019192 1.7e-09 68.2 120 49.2
THA.LOC104822709 Tarenaya hassleriana HOM05D001876 ORTHO05D002002 3.9e-09 67.0 284 29.9
HanXRQChr03g0077781 Helianthus annuus HOM05D001876 ORTHO05D002002 5.0e-09 66.6 311 29.3
Atru.chr1.2235 Acer truncatum HOM05D001876 ORTHO05D002002 1.5e-08 65.1 311 28.9
Potri.006G001400 Populus trichocarpa HOM05D001876 ORTHO05D002002 1.5e-08 65.1 328 28.7
SHI21632 Sapria himalayana HOM05D001876 ORTHO05D002002 1.9e-08 64.7 293 27.6
Sp3g11500 Schrenkiella parvula HOM05D001876 ORTHO05D002002 3.3e-08 63.9 302 29.5
THA.LOC104815682 Tarenaya hassleriana HOM05D001876 ORTHO05D002002 4.3e-08 63.5 290 27.6
Dinv04380 Davidia involucrata HOM05D001876 ORTHO05D002002 7.3e-08 62.8 223 30.5
HanXRQChr11g0334581 Helianthus annuus HOM05D001876 ORTHO05D002002 1.6e-07 61.6 277 28.5
AL3G25110 Arabidopsis lyrata HOM05D001876 ORTHO05D002002 2.1e-07 61.2 289 28.0
MBI15_g41024_MAGBIO Magnolia biondii HOM05D001876 ORTHO05D002002 3.6e-07 60.5 191 32.5
AL3G25120 Arabidopsis lyrata HOM05D001876 ORTHO05D002002 1.8e-06 58.2 307 28.3
Aa31LG8G520 Aethionema arabicum HOM05D001876 ORTHO05D002002 3.1e-06 57.4 284 29.9
PGR004G0187 Punica granatum HOM05D001876 ORTHO05D002002 4.0e-06 57.0 297 27.9
AT3G13290 Arabidopsis thaliana HOM05D001876 ORTHO05D002002 6.8e-06 56.2 292 30.1
FAN03G1210 Fragaria x ananassa HOM05D001876 ORTHO05D019192 8.9e-06 55.8 132 41.7
FAN06G3562 Fragaria x ananassa HOM05D001876 ORTHO05D019192 8.9e-06 55.8 188 35.1
Sopen10g001880 Solanum pennellii HOM05D001876 ORTHO05D002002 8.9e-06 55.8 295 25.8
unitig_8.g4773 Utricularia gibba HOM05D001876 ORTHO05D002002 8.9e-06 55.8 274 27.7


User provided reference genes

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