Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1594.3 809 100.0
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1280.0 864 79.6
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 1.1e-310 1069.7 908 66.0
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 1.4e-292 1009.6 958 59.3
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 9.1e-289 996.9 957 58.4
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 9.1e-289 996.9 959 58.5
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.0e-288 995.7 957 58.3
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 2.2e-287 992.3 954 59.7
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 3.2e-286 988.4 950 59.7
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.2e-285 986.5 999 56.6
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.0e-284 981.9 1001 55.9
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 6.7e-284 980.7 969 58.3
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 3.5e-280 968.4 959 58.4
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 2.7e-277 958.7 966 57.2
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 1.8e-276 956.1 964 57.2
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 5.2e-276 954.5 964 56.7
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 1.2e-275 953.4 967 56.9
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 3.3e-275 951.8 964 57.3
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 3.7e-274 948.3 955 57.3
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 6.3e-274 947.6 955 57.3
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 1.1e-273 946.8 966 56.8
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 1.8e-273 946.0 969 56.8
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 1.2e-272 943.3 964 57.2
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 2.7e-272 942.2 957 56.6
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 2.7e-272 942.2 965 56.0
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 4.5e-272 941.4 967 56.8
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 4.5e-272 941.4 980 55.4
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 1.7e-271 939.5 962 56.3
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 1.7e-271 939.5 965 55.8
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 2.2e-271 939.1 963 57.0
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 3.2e-270 935.3 999 54.7
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 4.2e-270 934.9 964 56.6
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 7.2e-270 934.1 931 56.6
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 2.1e-269 932.6 964 56.0
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 8.0e-269 930.6 963 56.8
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 1.0e-268 930.2 964 55.0
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 2.3e-268 929.1 959 55.5
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 3.0e-268 928.7 962 55.2
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 4.0e-268 928.3 954 56.0
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 5.2e-268 927.9 963 55.2
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 8.8e-268 927.2 972 56.0
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 8.8e-268 927.2 964 55.1
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 1.5e-267 926.4 949 55.7
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 1.5e-267 926.4 974 55.5
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 2.0e-267 926.0 956 55.2
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 5.7e-267 924.5 978 55.4
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 5.7e-267 924.5 964 55.4
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 7.5e-267 924.1 952 55.6
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 7.5e-267 924.1 963 56.0
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 9.8e-267 923.7 969 55.6
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 2.2e-266 922.5 963 56.0
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 2.8e-266 922.2 980 55.5
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 2.8e-266 922.2 976 55.1
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 3.7e-266 921.8 952 56.0
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 4.8e-266 921.4 978 55.3
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 8.3e-266 920.6 969 54.9
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 8.3e-266 920.6 964 54.3
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 3.1e-265 918.7 951 55.8
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 7.0e-265 917.5 967 55.1
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 1.6e-264 916.4 963 55.3
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 1.6e-264 916.4 960 55.6
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 4.5e-264 914.8 964 53.8
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 4.5e-264 914.8 970 55.4
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 7.7e-264 914.1 970 55.8
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 2.9e-263 912.1 965 55.0
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 2.9e-263 912.1 964 54.6
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 3.8e-263 911.8 969 55.3
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 5.0e-263 911.4 970 55.4
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 1.1e-262 910.2 963 54.1
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 3.2e-262 908.7 961 53.9
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 3.2e-262 908.7 968 54.2
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 2.1e-261 906.0 963 54.1
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 2.8e-261 905.6 957 54.0
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 3.6e-261 905.2 965 54.2
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 3.6e-261 905.2 965 55.2
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 4.7e-261 904.8 965 53.9
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 1.0e-260 903.7 967 54.6
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 2.3e-260 902.5 920 55.2
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 5.2e-260 901.4 956 55.4
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 1.2e-259 900.2 962 54.2
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 2.6e-259 899.0 969 53.3
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 2.6e-259 899.0 969 53.3
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 2.6e-259 899.0 934 54.7
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 2.6e-259 899.0 1012 53.3
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 1.3e-258 896.7 947 54.2
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 6.3e-258 894.4 960 53.6
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 1.1e-257 893.6 941 55.8
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 1.8e-257 892.9 970 54.0
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 3.1e-257 892.1 968 53.8
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 3.1e-257 892.1 968 53.8
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 3.5e-256 888.6 970 54.2
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 2.9e-255 885.6 964 53.5
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 3.8e-255 885.2 965 53.6
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 6.6e-255 884.4 964 53.0
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 1.5e-254 883.2 949 53.3
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 2.1e-253 879.4 944 54.6
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 7.5e-251 870.9 1067 49.6
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 9.8e-251 870.5 945 54.5
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 1.7e-250 869.8 957 52.1
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 5.4e-249 864.8 962 51.0
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 2.3e-247 859.4 962 50.8
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 3.0e-247 859.0 962 52.7
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 1.1e-244 850.5 940 52.1
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 9.8e-243 844.0 930 54.6
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 2.7e-240 835.9 963 50.2
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 2.0e-235 819.7 978 50.3
FvH4_3g25930 Fragaria vesca HOM05D004116 ORTHO05D004734 8.1e-229 797.7 502 84.3
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 5.1e-223 778.5 818 54.2
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 1.4e-217 760.4 964 48.8
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 1.6e-216 756.9 901 47.5
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 3.0e-215 752.7 922 49.5
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 5.6e-214 748.4 958 45.5
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 7.1e-209 731.5 937 47.6
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 6.9e-204 714.9 940 48.2
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 6.5e-194 681.8 973 42.4
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 1.6e-192 677.2 772 51.0
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 3.9e-191 672.5 964 42.6
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 6.1e-184 648.7 966 40.4
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 4.4e-174 615.9 931 42.6
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 1.4e-172 610.9 938 42.5
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 1.4e-172 610.9 921 42.6
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 2.6e-171 606.7 667 53.1
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 6.5e-170 602.1 974 39.2
Hma1.2p1_0604F.1_g187770 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 4.1e-164 582.8 547 60.3
FAN17G0761 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.3e-159 567.0 355 83.7
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 7.7e-155 552.0 650 48.6
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 2.2e-154 550.4 651 48.4
FvH4_3g25920 Fragaria vesca HOM05D004116 ORTHO05D004734 6.5e-154 548.9 387 76.7
FAN16G3124 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.9e-153 547.4 392 75.5
FAN09G1300 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.2e-151 539.3 336 83.6
FAN09G4205 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.2e-151 539.3 336 83.6
CDE04G3780 Ceratophyllum demersum HOM05D004116 ORTHO05D004734 7.5e-150 535.4 533 55.0
Aqoxy3G00661 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 1.0e-135 488.4 499 54.1
Psat1g069120 Pisum sativum HOM05D004116 ORTHO05D004734 4.6e-131 473.0 401 64.3
FAN21G0296 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.1e-124 449.9 288 83.3
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 1.2e-123 448.4 883 36.5
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 2.1e-120 437.6 967 34.0
FAN21G1378 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.1e-113 415.2 224 94.6
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 1.2e-112 411.8 301 71.1
BcaC04g24243 Brassica carinata HOM05D004116 ORTHO05D004734 5.8e-110 402.9 301 68.8
FAN21G1132 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.9e-109 400.6 233 90.6
FAN16G0481 Fragaria x ananassa HOM05D004116 ORTHO05D004734 7.1e-108 396.0 216 94.4
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.6e-104 383.6 395 57.5
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 1.1e-100 372.1 418 49.3
Psat1g069040 Pisum sativum HOM05D004116 ORTHO05D004734 2.7e-99 367.5 423 52.2
CBR_g12108 Chara braunii HOM05D004116 ORTHO05D004734 3.9e-98 363.6 465 44.3
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 2.9e-93 347.4 1007 28.9
Aqoxy3G00662 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 6.7e-90 336.3 410 48.3
SEGI_13711 Sequoiadendron giganteum HOM05D004116 ORTHO05D004734 1.2e-83 315.5 277 57.4
QL02p039616 Quercus lobata HOM05D004116 ORTHO05D004734 5.1e-82 310.1 260 64.6
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 1.1e-81 308.9 579 35.9
PSO384G2573 Papaver somniferum HOM05D004116 ORTHO05D004734 7.4e-73 279.6 478 38.1
Ah.12g062560 Amaranthus hybridus HOM05D004116 ORTHO05D004734 4.8e-72 276.9 279 56.6
BcaNung03312 Brassica carinata HOM05D004116 ORTHO05D004734 8.5e-69 266.2 494 41.3
Actinidia17574 Actinidia chinensis HOM05D004116 ORTHO05D004734 5.5e-60 236.9 266 53.4
FAN16G0041 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.0e-49 201.8 135 80.7
CBR_g12111 Chara braunii HOM05D004116 ORTHO05D004734 8.2e-48 196.4 506 29.8
Lsat_1_v5_gn_8_41201 Lactuca sativa HOM05D004116 ORTHO05D004734 3.0e-42 177.9 189 53.4
PSO478G4129 Papaver somniferum HOM05D004116 ORTHO05D004734 1.3e-40 172.6 414 33.1
Cre09.g398350 Chlamydomonas reinhardtii HOM05D004116 ORTHO05D004734 1.2e-38 166.0 546 27.8
Lsat_1_v5_gn_8_41221 Lactuca sativa HOM05D004116 ORTHO05D004734 2.2e-37 161.8 238 45.0
Oeu034757.1 Olea europaea HOM05D004116 ORTHO05D004734 2.9e-37 161.4 141 58.9
TAR622G0429 Trochodendron aralioides HOM05D004116 ORTHO05D004734 4.5e-30 137.5 287 35.5
Actinidia17575 Actinidia chinensis HOM05D004116 ORTHO05D004734 4.2e-28 131.0 76 82.9
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 3.4e-25 121.3 208 36.5
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 1.6e-22 112.5 62 90.3
CDE04G3166 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 1.9e-20 105.5 91 62.6
PSO675G1667 Papaver somniferum HOM05D004116 ORTHO05D004734 2.1e-19 102.1 101 53.5
Hma1.2p1_1813F.1_g303850 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 4.0e-18 97.8 133 47.4
Lsat_1_v5_gn_0_45261 Lactuca sativa HOM05D004116 ORTHO05D004734 7.5e-17 93.6 109 50.5
CAN.G111.24 Capsicum annuum HOM05D004116 ORTHO05D004734 2.9e-16 91.7 244 32.0
MCO05G368 Micromonas commoda HOM05D004116 ORTHO05D004734 3.7e-16 91.3 141 38.3
Psat1g069080 Pisum sativum HOM05D004116 ORTHO05D004734 1.6e-14 85.9 314 28.0
Hund13173 Selenicereus undatus HOM05D000214 ORTHO05D000131 4.6e-14 84.3 55 76.4
Lsat_1_v5_gn_1_20041 Lactuca sativa HOM05D004116 ORTHO05D004734 6.4e-08 63.9 63 52.4


User provided reference genes

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