Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G0538 Fragaria x ananassa HOM05D006010 ORTHO05D007381 5.7e-72 274.2 149 100.0
FvH4_1g30030 Fragaria vesca HOM05D006010 ORTHO05D007381 6.1e-66 254.2 158 91.1
FAN19G0427 Fragaria x ananassa HOM05D006010 ORTHO05D007381 3.0e-65 251.9 158 90.5
FAN28G0351 Fragaria x ananassa HOM05D006010 ORTHO05D007381 5.7e-64 247.7 158 89.2
FAN26G2228 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.6e-61 239.6 158 88.0
RcHm_v2.0_Chr3g0492111 Rosa chinensis HOM05D006010 ORTHO05D007381 4.3e-59 231.5 158 85.4
FAN28G1345 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.4e-57 226.5 158 82.9
Prupe.2G048000 Prunus persica HOM05D006010 ORTHO05D007381 3.3e-51 205.3 158 74.7
FAN23G2851 Fragaria x ananassa HOM05D006010 ORTHO05D007381 7.3e-51 204.1 158 76.6
MD02G1273300 Malus domestica HOM05D006010 ORTHO05D007381 2.1e-50 202.6 158 74.1
FAN21G0982 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.2e-42 176.8 149 71.1
CiPaw.03G074500 Carya illinoinensis HOM05D006010 ORTHO05D007381 1.4e-41 173.3 157 65.6
QL12p000853 Quercus lobata HOM05D006010 ORTHO05D007381 5.2e-41 171.4 153 65.4
VMungo0464G0699 Vigna mungo HOM05D006010 ORTHO05D007381 6.8e-41 171.0 152 65.1
CANSAT01G2297 Cannabis sativa HOM05D006010 ORTHO05D007381 2.6e-40 169.1 151 69.5
Lalb_Chr10g0104261 Lupinus albus HOM05D006010 ORTHO05D007381 8.3e-39 164.1 152 62.5
Ciclev10026000m.g Citrus clementina HOM05D006010 ORTHO05D007381 5.4e-38 161.4 152 61.8
MD07G1042200 Malus domestica HOM05D006010 ORTHO05D007381 5.4e-38 161.4 150 66.0
Phvul.004G098200 Phaseolus vulgaris HOM05D006010 ORTHO05D007381 7.1e-38 161.0 133 69.9
TPR.G23647 Trifolium pratense HOM05D006010 ORTHO05D007381 3.5e-37 158.7 157 61.1
Lj4g0009716 Lotus japonicus HOM05D006010 ORTHO05D007381 4.6e-37 158.3 145 65.5
Ca_05962_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 1.0e-36 157.1 157 58.6
GSVIVG01015997001 Vitis vinifera HOM05D006010 ORTHO05D007381 1.3e-36 156.8 158 59.5
PGR004G1862 Punica granatum HOM05D006010 ORTHO05D007381 1.9e-35 152.9 154 60.4
GSVIVG01016005001 Vitis vinifera HOM05D006010 ORTHO05D007381 2.5e-35 152.5 158 58.2
arahy.Tifrunner.gnm1.ann1.ZG5C6W Arachis hypogaea HOM05D006010 ORTHO05D007381 3.3e-35 152.1 155 61.9
Manes.07G077600 Manihot esculenta HOM05D006010 ORTHO05D007381 5.6e-35 151.4 137 66.4
arahy.Tifrunner.gnm1.ann1.14A9Q3 Arachis hypogaea HOM05D006010 ORTHO05D007381 9.5e-35 150.6 146 62.3
arahy.Tifrunner.gnm1.ann1.RW4QB8 Arachis hypogaea HOM05D006010 ORTHO05D007381 9.5e-35 150.6 146 62.3
Sed0022983 Sechium edule HOM05D006010 ORTHO05D007381 2.1e-34 149.4 155 54.8
CsaV3_2G017210 Cucumis sativus L. HOM05D006010 ORTHO05D007381 3.6e-34 148.7 158 55.7
ClCG05G010670 Citrullus lanatus HOM05D006010 ORTHO05D007381 8.1e-34 147.5 157 54.1
Actinidia35721 Actinidia chinensis HOM05D006010 ORTHO05D007381 2.4e-33 146.0 137 64.2
Atru.chr11.39 Acer truncatum HOM05D006010 ORTHO05D007381 3.1e-33 145.6 139 63.3
MSTRG.15654 Avicennia marina HOM05D006010 ORTHO05D007381 5.2e-33 144.8 158 55.1
MELO3C020924.2 Cucumis melo HOM05D006010 ORTHO05D007381 6.8e-33 144.4 158 54.4
Sed0003139 Sechium edule HOM05D006010 ORTHO05D007381 8.9e-33 144.1 157 54.8
Ca_05837_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 1.5e-32 143.3 145 59.3
Cfa007784 Carpinus fangiana HOM05D006010 ORTHO05D007381 2.0e-32 142.9 154 55.8
Haze_14288 Corylus avellana HOM05D006010 ORTHO05D007381 2.6e-32 142.5 154 55.8
Potri.017G135500 Populus trichocarpa HOM05D006010 ORTHO05D007381 5.8e-32 141.4 139 62.6
Sabra17G0111300 Salix brachista HOM05D006010 ORTHO05D007381 5.8e-32 141.4 158 56.3
Sabra17G0114300 Salix brachista HOM05D006010 ORTHO05D007381 5.8e-32 141.4 158 56.3
TWI53G0527 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 1.7e-31 139.8 137 62.8
Cc02_g11480 Coffea canephora HOM05D006010 ORTHO05D007381 2.2e-31 139.4 163 55.8
Psat2g045640 Pisum sativum HOM05D006010 ORTHO05D007381 3.8e-31 138.7 139 62.6
Medtr5g077800 Medicago truncatula HOM05D006010 ORTHO05D007381 4.9e-31 138.3 157 56.7
GSVIVG01016007001 Vitis vinifera HOM05D006010 ORTHO05D007381 6.4e-31 137.9 158 54.4
Duzib235G0102 Durio zibethinus HOM05D006010 ORTHO05D007381 8.4e-31 137.5 145 60.0
Peaxi162Scf00464g00430 Petunia axillaris HOM05D006010 ORTHO05D007381 1.4e-30 136.7 150 56.7
Ah.05g176710 Amaranthus hybridus HOM05D006010 ORTHO05D007381 3.2e-30 135.6 130 60.0
Cpa.g.sc116.81 Carica papaya HOM05D006010 ORTHO05D007381 9.2e-30 134.0 199 46.2
EL10Ac3g05516 Beta vulgaris HOM05D006010 ORTHO05D007381 1.6e-29 133.3 139 57.6
Nn3g17023 Nelumbo nucifera HOM05D006010 ORTHO05D007381 1.6e-29 133.3 154 54.5
TWI74G0222 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 1.6e-29 133.3 155 54.8
Rhsim10G0180400 Rhododendron simsii HOM05D006010 ORTHO05D007381 2.1e-29 132.9 151 55.6
GSVIVG01015998001 Vitis vinifera HOM05D006010 ORTHO05D007381 2.1e-29 132.9 147 56.5
PGSC0003DMG400013242 Solanum tuberosum HOM05D006010 ORTHO05D007381 2.7e-29 132.5 157 54.8
Actinidia28796 Actinidia chinensis HOM05D006010 ORTHO05D007381 4.6e-29 131.7 137 59.1
Sopen11g006280 Solanum pennellii HOM05D006010 ORTHO05D007381 4.6e-29 131.7 158 55.1
Glyma.02G082600 Glycine max HOM05D006010 ORTHO05D007381 1.0e-28 130.6 145 55.9
ECA236G4224 Erigeron canadensis HOM05D006010 ORTHO05D007381 3.0e-28 129.0 156 57.1
Eucgr.F02881 Eucalyptus grandis HOM05D006010 ORTHO05D007381 2.5e-27 125.9 145 56.6
Sed0026765 Sechium edule HOM05D006010 ORTHO05D007381 2.5e-27 125.9 155 49.0
CAN.G222.64 Capsicum annuum HOM05D006010 ORTHO05D007381 2.8e-26 122.5 152 52.6
Glyma.16G168300 Glycine max HOM05D006010 ORTHO05D007381 3.6e-26 122.1 148 52.7
SalBow1G7757 Salvia bowleyana HOM05D006010 ORTHO05D007381 6.2e-26 121.3 158 46.8
Lsat_1_v5_gn_3_65880 Lactuca sativa HOM05D006010 ORTHO05D007381 1.4e-25 120.2 141 57.4
unitig_0.g1692 Utricularia gibba HOM05D006010 ORTHO05D007381 1.8e-25 119.8 138 54.3
Oeu048940.2 Olea europaea HOM05D006010 ORTHO05D007381 3.1e-25 119.0 158 48.1
THA.LOC104827184 Tarenaya hassleriana HOM05D006010 ORTHO05D007381 6.9e-25 117.9 193 43.0
Migut.K00936 Erythranthe guttata HOM05D006010 ORTHO05D007381 1.5e-24 116.7 159 48.4
Hund11982 Selenicereus undatus HOM05D006010 ORTHO05D007381 1.3e-23 113.6 144 50.0
DCAR_014157 Daucus carota HOM05D006010 ORTHO05D007381 1.7e-23 113.2 139 51.1
SHI30126 Sapria himalayana HOM05D006010 ORTHO05D007381 1.7e-23 113.2 156 48.1
Hma1.2p1_0249F.1_g102390 Hydrangea macrophylla HOM05D006010 ORTHO05D007381 3.8e-23 112.1 146 47.9
AUR62016215 Chenopodium quinoa HOM05D006010 ORTHO05D007381 2.4e-22 109.4 140 53.6
CDE09G0547 Ceratophyllum demersum HOM05D006010 ORTHO05D007381 1.2e-21 107.1 179 43.6
HanXRQChr15g0482991 Helianthus annuus HOM05D006010 ORTHO05D007381 1.6e-21 106.7 157 49.0
ATR0320G006 Amborella trichopoda HOM05D006010 ORTHO05D007381 3.5e-21 105.5 158 45.6
Lj2A517G40 Lonicera japonica HOM05D006010 ORTHO05D007381 1.3e-20 103.6 104 61.5
TAR623G0083 Trochodendron aralioides HOM05D006010 ORTHO05D007381 2.3e-20 102.8 156 48.7
Thecc.06G019600 Theobroma cacao HOM05D006010 ORTHO05D007381 8.7e-20 100.9 199 39.7
CSS0001849 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 1.3e-18 97.1 111 55.9
CSS0044569 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 1.3e-18 97.1 111 55.9
Solyc11g011490.2 Solanum lycopersicum HOM05D006010 ORTHO05D007381 3.6e-18 95.5 105 60.0
COL.COLO4_31121 Corchorus olitorius HOM05D006010 ORTHO05D007381 8.1e-18 94.4 108 57.4
Aqoxy3G00232 Aquilegia oxysepala HOM05D006010 ORTHO05D007381 1.8e-17 93.2 127 49.6
Nitab4.5_0011135g0050 Nicotiana tabacum HOM05D006010 ORTHO05D007381 2.4e-17 92.8 113 53.1
Os05g0495100 Oryza sativa ssp. japonica HOM05D006010 ORTHO05D007381 6.9e-17 91.3 140 45.7
AUR62039273 Chenopodium quinoa HOM05D006010 ORTHO05D007381 9.0e-17 90.9 104 56.7
SGA_v2.0_scaffold115G32097 Striga asiatica HOM05D006010 ORTHO05D007381 9.0e-17 90.9 147 45.6
Sc22g0001300 Simmondsia chinensis HOM05D006010 ORTHO05D007381 1.2e-16 90.5 84 61.9
Zm00001eb291600 Zea mays HOM05D006010 ORTHO05D007381 3.4e-16 89.0 137 46.7
BcaC05g30500 Brassica carinata HOM05D000919 ORTHO05D004442 8.4e-15 84.3 142 43.0
Sp3g01890 Schrenkiella parvula HOM05D006010 ORTHO05D007381 6.0e-13 78.2 188 35.1
Gohir.A10G157800 Gossypium hirsutum HOM05D006010 ORTHO05D007381 1.3e-12 77.0 109 50.5
vmacro20589 Vaccinium macrocarpon HOM05D006010 ORTHO05D007381 5.6e-11 71.6 158 41.1
Thhalv10021193m.g Eutrema salsugineum HOM05D006010 ORTHO05D007381 7.4e-11 71.2 108 42.6
Aa31LG5G13330 Aethionema arabicum HOM05D006010 ORTHO05D007381 9.6e-11 70.9 183 34.4
Gorai.011G090700 Gossypium raimondii HOM05D006010 ORTHO05D007381 1.6e-10 70.1 111 47.7
Gohir.D10G083400 Gossypium hirsutum HOM05D006010 ORTHO05D007381 6.2e-10 68.2 113 46.9
Carub.0003s0196 Capsella rubella HOM05D006010 ORTHO05D007381 8.1e-10 67.8 117 40.2
C09p75990 Brassica napus HOM05D006010 ORTHO05D007381 2.4e-09 66.2 104 41.3
BolC5t35058H Brassica oleracea HOM05D006010 ORTHO05D007381 2.4e-09 66.2 104 41.3
A05p44250 Brassica napus HOM05D006010 ORTHO05D007381 3.1e-09 65.9 112 39.3
BraA06t23281Z Brassica rapa HOM05D000919 ORTHO05D004442 3.1e-09 65.9 112 39.3
Pp3c12_7630 Physcomitrium patens HOM05D006010 ORTHO05D007381 3.1e-09 65.9 156 32.7
CARHR076870 Cardamine hirsuta HOM05D006010 ORTHO05D007381 6.9e-09 64.7 117 37.6
PSO017G1892 Papaver somniferum HOM05D006010 ORTHO05D007381 3.4e-08 62.4 64 54.7
PSO478G0898 Papaver somniferum HOM05D006010 ORTHO05D007381 3.4e-08 62.4 64 54.7
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 4.5e-08 62.0 37 81.1
AL3G12280 Arabidopsis lyrata HOM05D006010 ORTHO05D007381 2.9e-07 59.3 129 33.3
AagrBONN_evm.TU.Sc2ySwM_369.381 Anthoceros agrestis HOM05D006010 ORTHO05D007381 3.8e-07 58.9 131 37.4
AT3G02860 Arabidopsis thaliana HOM05D006010 ORTHO05D007381 4.9e-07 58.5 127 33.9
TPR.G36575 Trifolium pratense HOM05D006010 ORTHO05D007381 1.4e-06 57.0 34 79.4


User provided reference genes

Program Settings