Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G0310 Fragaria x ananassa HOM05D002824 ORTHO05D008771 2.2e-79 298.9 148 100.0
FAN16G1250 Fragaria x ananassa HOM05D002824 ORTHO05D008771 8.2e-79 297.0 148 99.3
FAN21G0827 Fragaria x ananassa HOM05D002824 ORTHO05D008771 5.9e-61 237.7 125 96.0
FAN11G2965 Fragaria x ananassa HOM05D002824 ORTHO05D008771 2.2e-60 235.7 125 95.2
FvH4_3g20270 Fragaria vesca HOM05D002824 ORTHO05D008771 1.9e-59 232.6 119 98.3
RcHm_v2.0_Chr5g0034161 Rosa chinensis HOM05D002824 ORTHO05D008771 4.4e-48 194.9 130 82.3
Prupe.4G182300 Prunus persica HOM05D002824 ORTHO05D008771 2.6e-32 142.5 133 60.9
Prupe.4G182400 Prunus persica HOM05D002824 ORTHO05D008771 1.0e-28 130.6 134 58.2
MD11G1244000 Malus domestica HOM05D002824 ORTHO05D008771 8.0e-26 120.9 141 55.3
VMungo1215G1991 Vigna mungo HOM05D002824 ORTHO05D008771 9.2e-22 107.5 119 52.1
Phvul.003G183400 Phaseolus vulgaris HOM05D002824 ORTHO05D008771 2.7e-21 105.9 119 51.3
QL08p021656 Quercus lobata HOM05D002824 ORTHO05D008771 8.6e-20 100.9 128 50.8
CsaV3_4G033730 Cucumis sativus L. HOM05D002824 ORTHO05D008771 1.5e-19 100.1 123 52.0
Glyma.05G019600 Glycine max HOM05D002824 ORTHO05D008771 4.3e-19 98.6 123 49.6
Glyma.17G080200 Glycine max HOM05D002824 ORTHO05D008771 5.6e-19 98.2 119 51.3
TPR.G40092 Trifolium pratense HOM05D002824 ORTHO05D008771 7.3e-19 97.8 138 47.8
ClCG11G018100 Citrullus lanatus HOM05D002824 ORTHO05D008771 1.2e-18 97.1 136 44.9
CiPaw.11G169000 Carya illinoinensis HOM05D002824 ORTHO05D008771 2.1e-18 96.3 70 68.6
MELO3C016702.2 Cucumis melo HOM05D002824 ORTHO05D008771 2.1e-18 96.3 123 50.4
Manes.10G116800 Manihot esculenta HOM05D002824 ORTHO05D008771 2.1e-18 96.3 77 62.3
Manes.07G025200 Manihot esculenta HOM05D002824 ORTHO05D008771 4.7e-18 95.1 65 70.8
Medtr8g061130 Medicago truncatula HOM05D002824 ORTHO05D008771 4.7e-18 95.1 133 45.1
DCAR_032520 Daucus carota HOM05D002824 ORTHO05D008771 8.1e-18 94.4 55 78.2
Lalb_Chr01g0006541 Lupinus albus HOM05D002824 ORTHO05D008771 8.1e-18 94.4 128 46.9
Potri.018G038900 Populus trichocarpa HOM05D002824 ORTHO05D008771 8.1e-18 94.4 75 65.3
HanXRQChr00c0394g0574551 Helianthus annuus HOM05D002824 ORTHO05D008771 1.1e-17 94.0 55 76.4
HanXRQChr00c0593g0576361 Helianthus annuus HOM05D002824 ORTHO05D008771 1.1e-17 94.0 55 76.4
HanXRQChr00c0925g0577891 Helianthus annuus HOM05D002824 ORTHO05D008771 1.1e-17 94.0 55 76.4
HanXRQChr01g0020221 Helianthus annuus HOM05D002824 ORTHO05D008771 1.1e-17 94.0 55 76.4
HanXRQChr02g0052601 Helianthus annuus HOM05D002824 ORTHO05D008771 1.1e-17 94.0 55 76.4
HanXRQChr04g0127491 Helianthus annuus HOM05D002824 ORTHO05D008771 1.1e-17 94.0 55 76.4
HanXRQChr05g0152571 Helianthus annuus HOM05D002824 ORTHO05D008771 1.1e-17 94.0 55 76.4
HanXRQChr10g0284381 Helianthus annuus HOM05D002824 ORTHO05D008771 1.1e-17 94.0 55 76.4
HanXRQChr10g0318061 Helianthus annuus HOM05D002824 ORTHO05D008771 1.1e-17 94.0 55 76.4
HanXRQChr11g0321091 Helianthus annuus HOM05D002824 ORTHO05D008771 1.1e-17 94.0 55 76.4
HanXRQChr11g0326961 Helianthus annuus HOM05D002824 ORTHO05D008771 1.1e-17 94.0 55 76.4
HanXRQChr12g0369851 Helianthus annuus HOM05D002824 ORTHO05D008771 1.1e-17 94.0 55 76.4
HanXRQChr15g0486561 Helianthus annuus HOM05D002824 ORTHO05D008771 1.1e-17 94.0 55 76.4
HanXRQCPg0580181 Helianthus annuus HOM05D002824 ORTHO05D008771 1.1e-17 94.0 55 76.4
Lsat_1_v5_gn_0_41600 Lactuca sativa HOM05D000964 ORTHO05D004047 1.1e-17 94.0 55 76.4
Lsat_1_v5_gn_2_92080 Lactuca sativa HOM05D000964 ORTHO05D004047 1.1e-17 94.0 55 76.4
Lsat_1_v5_gn_3_81720 Lactuca sativa HOM05D000964 ORTHO05D003870 1.1e-17 94.0 55 76.4
Lsat_1_v5_gn_6_69061 Lactuca sativa HOM05D000964 ORTHO05D004047 1.1e-17 94.0 55 76.4
Lsat_1_v5_gn_8_146180 Lactuca sativa HOM05D000964 ORTHO05D003870 1.1e-17 94.0 55 76.4
Lj3g0012155 Lotus japonicus HOM05D002824 ORTHO05D008771 1.1e-17 94.0 120 47.5
Peaxi162Scf00652g00418 Petunia axillaris HOM05D002824 ORTHO05D008771 1.1e-17 94.0 72 62.5
Eucgr.G00343 Eucalyptus grandis HOM05D002824 ORTHO05D008771 1.4e-17 93.6 64 64.1
Potri.006G241100 Populus trichocarpa HOM05D002824 ORTHO05D008771 1.8e-17 93.2 71 67.6
PGR042G2139 Punica granatum HOM05D002824 ORTHO05D008771 1.8e-17 93.2 118 45.8
Hma1.2p1_0818F.1_g223320 Hydrangea macrophylla HOM05D002824 ORTHO05D008771 2.3e-17 92.8 53 79.2
PGSC0003DMG400007705 Solanum tuberosum HOM05D002824 ORTHO05D008771 2.3e-17 92.8 70 62.9
arahy.Tifrunner.gnm1.ann1.RFE8PP Arachis hypogaea HOM05D002824 ORTHO05D008771 3.1e-17 92.4 114 49.1
Nitab4.5_0000676g0190 Nicotiana tabacum HOM05D002824 ORTHO05D008771 3.1e-17 92.4 116 49.1
Psat4g172920 Pisum sativum HOM05D002824 ORTHO05D008771 3.1e-17 92.4 132 45.5
Solyc12g098350.1 Solanum lycopersicum HOM05D002824 ORTHO05D008771 3.1e-17 92.4 54 74.1
Sopen12g033130 Solanum pennellii HOM05D002824 ORTHO05D008771 3.1e-17 92.4 54 74.1
Sed0016999 Sechium edule HOM05D002824 ORTHO05D008771 4.0e-17 92.0 144 42.4
CAN.G767.42 Capsicum annuum HOM05D002824 ORTHO05D008771 6.8e-17 91.3 54 72.2
PSO548G0003 Papaver somniferum HOM05D002824 ORTHO05D008771 6.8e-17 91.3 55 72.7
Nitab4.5_0005206g0060 Nicotiana tabacum HOM05D002824 ORTHO05D008771 8.9e-17 90.9 118 46.6
Sabra06G0188500 Salix brachista HOM05D002824 ORTHO05D008771 8.9e-17 90.9 75 61.3
Sc25g0002050 Simmondsia chinensis HOM05D000964 ORTHO05D001488 8.9e-17 90.9 57 71.9
Aa31LG9G11000 Aethionema arabicum HOM05D002824 ORTHO05D008771 3.4e-16 89.0 59 74.6
Lsat_1_v5_gn_5_50421 Lactuca sativa HOM05D000964 ORTHO05D003870 3.4e-16 89.0 55 72.7
Cpa.g.sc321.5 Carica papaya HOM05D002824 ORTHO05D008771 7.5e-16 87.8 52 78.8
Duzib205G1549 Durio zibethinus HOM05D002824 ORTHO05D008771 7.5e-16 87.8 126 42.9
AT4G11175 Arabidopsis thaliana HOM05D002824 ORTHO05D008771 9.9e-16 87.4 59 72.9
Ciclev10022760m.g Citrus clementina HOM05D002824 ORTHO05D008771 9.9e-16 87.4 58 67.2
Ah.10g027210 Amaranthus hybridus HOM05D000964 ORTHO05D001488 1.7e-15 86.7 56 69.6
Ah.10g027340 Amaranthus hybridus HOM05D000964 ORTHO05D001488 1.7e-15 86.7 56 69.6
Ah.10g027460 Amaranthus hybridus HOM05D000964 ORTHO05D001488 1.7e-15 86.7 56 69.6
Aqoxy7G01548 Aquilegia oxysepala HOM05D002824 ORTHO05D008771 1.7e-15 86.7 57 64.9
AL6G45360 Arabidopsis lyrata HOM05D002824 ORTHO05D008771 1.7e-15 86.7 59 72.9
BcaB05g23855 Brassica carinata HOM05D002824 ORTHO05D008771 1.7e-15 86.7 59 72.9
A09p28030 Brassica napus HOM05D002824 ORTHO05D008771 1.7e-15 86.7 59 72.9
BraA09t38371Z Brassica rapa HOM05D002824 ORTHO05D008771 1.7e-15 86.7 59 72.9
Carub.0006s3001 Capsella rubella HOM05D002824 ORTHO05D008771 1.7e-15 86.7 59 72.9
CARHR255400 Cardamine hirsuta HOM05D002824 ORTHO05D008771 1.7e-15 86.7 59 72.9
COL.COLO4_21755 Corchorus olitorius HOM05D002824 ORTHO05D008771 1.7e-15 86.7 122 42.6
Thhalv10029051m.g Eutrema salsugineum HOM05D002824 ORTHO05D008771 1.7e-15 86.7 59 72.9
Sp6g06240 Schrenkiella parvula HOM05D002824 ORTHO05D008771 1.7e-15 86.7 59 72.9
EL10Ac5g11668 Beta vulgaris HOM05D002824 ORTHO05D008771 2.2e-15 86.3 55 70.9
BcaC04g21113 Brassica carinata HOM05D002824 ORTHO05D008771 2.2e-15 86.3 59 71.2
C09p35540 Brassica napus HOM05D002824 ORTHO05D008771 2.2e-15 86.3 59 71.2
BolC9t56393H Brassica oleracea HOM05D002824 ORTHO05D008771 2.2e-15 86.3 59 71.2
Gohir.A12G232300 Gossypium hirsutum HOM05D002824 ORTHO05D008771 2.2e-15 86.3 121 43.0
Atru.chr9.2077 Acer truncatum HOM05D002824 ORTHO05D008771 2.9e-15 85.9 71 60.6
BcaB01g01596 Brassica carinata HOM05D002824 ORTHO05D008771 2.9e-15 85.9 113 47.8
Gohir.D12G235100 Gossypium hirsutum HOM05D002824 ORTHO05D008771 2.9e-15 85.9 127 40.9
Gorai.008G251300 Gossypium raimondii HOM05D002824 ORTHO05D008771 2.9e-15 85.9 127 40.9
Atru.chr1.2540 Acer truncatum HOM05D002824 ORTHO05D008771 3.7e-15 85.5 71 59.2
Thecc.03G290100 Theobroma cacao HOM05D002824 ORTHO05D008771 3.7e-15 85.5 129 42.6
Duzib084G0020 Durio zibethinus HOM05D002824 ORTHO05D008771 1.1e-14 84.0 124 44.4
THA.LOC104814832 Tarenaya hassleriana HOM05D002824 ORTHO05D008771 1.1e-14 84.0 56 71.4
Ah.10g028980 Amaranthus hybridus HOM05D000964 ORTHO05D001488 1.4e-14 83.6 56 67.9
Lsat_1_v5_gn_2_136980 Lactuca sativa HOM05D002824 ORTHO05D008771 2.4e-14 82.8 60 61.7
Oeu054718.1 Olea europaea HOM05D002824 ORTHO05D008771 3.2e-14 82.4 74 56.8
Sc16g0004450 Simmondsia chinensis HOM05D002824 ORTHO05D008771 5.4e-14 81.6 66 57.6
Medtr0002s0770 Medicago truncatula HOM05D002824 ORTHO05D008771 1.3e-12 77.0 51 72.5
Hund29957 Selenicereus undatus HOM05D002824 ORTHO05D007162 5.1e-12 75.1 98 42.9
SMO358G0035 Selaginella moellendorffii HOM05D002824 ORTHO05D008771 8.6e-12 74.3 47 68.1
Peaxi162Scf00299g00114 Petunia axillaris HOM05D002824 ORTHO05D007162 4.3e-11 72.0 100 44.0
Sc20g0004270 Simmondsia chinensis HOM05D000964 ORTHO05D001488 5.6e-11 71.6 57 63.2
Hund04057 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.3e-11 71.2 102 41.2
Hund08802 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.3e-11 71.2 102 41.2
Hund12527 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.3e-11 71.2 102 41.2
Hund19320 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.3e-11 71.2 102 41.2
Hund27962 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.3e-11 71.2 102 41.2
Hund27985 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.3e-11 71.2 102 41.2
Hund28109 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.3e-11 71.2 102 41.2
Hund28268 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.3e-11 71.2 102 41.2
Hund28459 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.3e-11 71.2 102 41.2
Hund28519 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.3e-11 71.2 102 41.2
Hund28529 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.3e-11 71.2 102 41.2
Hund28632 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.3e-11 71.2 102 41.2
Hund28678 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.3e-11 71.2 102 41.2
Hund28746 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.3e-11 71.2 102 41.2
Hund28759 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.3e-11 71.2 102 41.2
Hund28778 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.3e-11 71.2 102 41.2
Hund28846 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.3e-11 71.2 102 41.2
Hund29022 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.3e-11 71.2 102 41.2
Hund29036 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.3e-11 71.2 102 41.2
Hund29164 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.3e-11 71.2 102 41.2
Hund29217 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.3e-11 71.2 102 41.2
Hund29505 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.3e-11 71.2 102 41.2
Hund29525 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.3e-11 71.2 102 41.2
Hund29537 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.3e-11 71.2 102 41.2
Hund29554 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.3e-11 71.2 102 41.2
Hund29593 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.3e-11 71.2 102 41.2
Hund29605 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.3e-11 71.2 102 41.2
Hund29612 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.3e-11 71.2 102 41.2
Hund29682 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.3e-11 71.2 102 41.2
Hund30031 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.3e-11 71.2 102 41.2
Hund30069 Selenicereus undatus HOM05D002824 ORTHO05D008771 7.3e-11 71.2 102 41.2
Hund30272 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.3e-11 71.2 102 41.2
Hund30490 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.3e-11 71.2 102 41.2
Hund30495 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.3e-11 71.2 102 41.2
Hund30544 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.3e-11 71.2 102 41.2
Hund31501 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.3e-11 71.2 102 41.2
Hund26844 Selenicereus undatus HOM05D000964 ORTHO05D001488 6.2e-10 68.2 54 59.3
Hund27578 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-09 67.4 107 39.3
ClCG00G003150 Citrullus lanatus HOM05D002824 ORTHO05D008771 3.1e-09 65.9 47 66.0
PSO782G5188 Papaver somniferum HOM05D002824 ORTHO05D008771 4.0e-09 65.5 57 54.4
Ca_24278_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 1.5e-08 63.5 36 75.0
ClCG11G017170 Citrullus lanatus HOM05D002824 ORTHO05D008771 1.3e-07 60.5 41 68.3
Ca_29478_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 1.7e-07 60.1 54 48.1
MELO3C027648.2 Cucumis melo HOM05D002824 ORTHO05D008771 2.9e-07 59.3 47 59.6
PRCOL_00002279 Prasinoderma coloniale HOM05D002824 ORTHO05D008771 7.1e-06 54.7 54 42.6
Cc09_g05310 Coffea canephora HOM05D002824 ORTHO05D008771 9.2e-06 54.3 78 43.6


User provided reference genes

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