Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G3193 Fragaria x ananassa HOM05D005914 ORTHO05D007361 2.1e-241 838.6 411 100.0
FvH4_2g29650 Fragaria vesca HOM05D005914 ORTHO05D007361 1.0e-240 836.3 411 99.5
RcHm_v2.0_Chr6g0298621 Rosa chinensis HOM05D005914 ORTHO05D007361 6.0e-204 714.1 386 91.2
MD15G1120500 Malus domestica HOM05D005914 ORTHO05D007361 7.3e-178 627.5 383 81.7
Haze_21570 Corylus avellana HOM05D005914 ORTHO05D007361 7.9e-164 580.9 387 74.9
Cfa013180 Carpinus fangiana HOM05D005914 ORTHO05D007361 9.6e-162 573.9 383 74.4
Thecc.09G149100 Theobroma cacao HOM05D005914 ORTHO05D007361 2.4e-160 569.3 384 74.5
QL02p022744 Quercus lobata HOM05D005914 ORTHO05D007361 1.3e-158 563.5 381 74.3
Ciclev10008576m.g Citrus clementina HOM05D005914 ORTHO05D007361 5.5e-157 558.1 392 72.4
CiPaw.07G220900 Carya illinoinensis HOM05D005914 ORTHO05D007361 7.1e-157 557.8 386 72.0
TWI63G0300 Tripterygium wilfordii HOM05D005914 ORTHO05D007361 1.6e-156 556.6 383 71.5
GSVIVG01035808001 Vitis vinifera HOM05D005914 ORTHO05D007361 2.1e-156 556.2 388 71.6
CANSAT80G2406 Cannabis sativa HOM05D005914 ORTHO05D007361 7.9e-156 554.3 388 72.2
Potri.006G250800 Populus trichocarpa HOM05D005914 ORTHO05D007361 7.9e-156 554.3 387 71.3
Atru.chr7.2376 Acer truncatum HOM05D005914 ORTHO05D007361 1.3e-155 553.5 389 73.0
CANSAT80G0109 Cannabis sativa HOM05D005914 ORTHO05D007361 2.3e-155 552.7 388 71.9
Gohir.A08G236800 Gossypium hirsutum HOM05D005914 ORTHO05D007361 3.0e-155 552.4 387 71.6
Sabra06G0196100 Salix brachista HOM05D005914 ORTHO05D007361 8.7e-155 550.8 379 72.3
Gorai.004G274400 Gossypium raimondii HOM05D005914 ORTHO05D007361 3.3e-154 548.9 383 71.5
CSS0046358 Camellia sinensis var. sinensis HOM05D005914 ORTHO05D007361 9.7e-154 547.4 383 71.0
TAR625G1283 Trochodendron aralioides HOM05D005914 ORTHO05D007361 9.0e-152 540.8 393 69.2
Actinidia22373 Actinidia chinensis HOM05D005914 ORTHO05D007361 4.5e-151 538.5 383 69.7
Thhalv10004397m.g Eutrema salsugineum HOM05D005914 ORTHO05D007361 4.5e-151 538.5 386 70.5
Eucgr.C01789 Eucalyptus grandis HOM05D005914 ORTHO05D007361 7.7e-151 537.7 381 70.3
Carub.0006s2334 Capsella rubella HOM05D005914 ORTHO05D007361 2.9e-150 535.8 384 70.8
AL6G37280 Arabidopsis lyrata HOM05D005914 ORTHO05D007361 3.8e-150 535.4 384 70.6
AT5G25480 Arabidopsis thaliana HOM05D005914 ORTHO05D007361 5.0e-150 535.0 376 71.5
ClCG08G013130 Citrullus lanatus HOM05D005914 ORTHO05D007361 8.5e-150 534.3 387 69.0
Sp2g22050 Schrenkiella parvula HOM05D005914 ORTHO05D007361 1.1e-149 533.9 380 70.5
Glyma.15G054900 Glycine max HOM05D005914 ORTHO05D007361 1.4e-149 533.5 387 70.0
MELO3C011235.2 Cucumis melo HOM05D005914 ORTHO05D007361 2.5e-149 532.7 388 68.6
THA.LOC104799221 Tarenaya hassleriana HOM05D005914 ORTHO05D007361 7.2e-149 531.2 387 69.0
C07p42340 Brassica napus HOM05D005914 ORTHO05D007361 2.1e-148 529.6 385 69.4
PGR142G2371 Punica granatum HOM05D005914 ORTHO05D007361 2.1e-148 529.6 389 69.2
FAN27G2538 Fragaria x ananassa HOM05D005914 ORTHO05D007361 4.6e-148 528.5 373 76.9
A06p36180 Brassica napus HOM05D005914 ORTHO05D007361 7.9e-148 527.7 383 70.0
arahy.Tifrunner.gnm1.ann1.J9LH1L Arachis hypogaea HOM05D005914 ORTHO05D007361 1.0e-147 527.3 386 69.2
Psat1g215880 Pisum sativum HOM05D005914 ORTHO05D007361 1.4e-147 526.9 378 70.9
Aa31LG11G4850 Aethionema arabicum HOM05D005914 ORTHO05D007361 1.8e-147 526.6 378 70.4
Lj6g0019162 Lotus japonicus HOM05D005914 ORTHO05D007361 2.3e-147 526.2 376 71.0
BraA06t26540Z Brassica rapa HOM05D005914 ORTHO05D007361 8.8e-147 524.2 376 70.7
Cc11_g01820 Coffea canephora HOM05D005914 ORTHO05D007361 1.5e-146 523.5 394 66.5
arahy.Tifrunner.gnm1.ann1.T9E77A Arachis hypogaea HOM05D005914 ORTHO05D007361 2.0e-146 523.1 386 68.7
Lalb_Chr20g0122961 Lupinus albus HOM05D005914 ORTHO05D007361 3.3e-146 522.3 372 70.7
Rhsim02G0194500 Rhododendron simsii HOM05D005914 ORTHO05D007361 9.7e-146 520.8 388 67.5
HanXRQChr13g0402741 Helianthus annuus HOM05D005914 ORTHO05D007361 3.7e-145 518.8 376 67.8
Aqoxy7G02060 Aquilegia oxysepala HOM05D005914 ORTHO05D007361 4.8e-145 518.5 387 66.4
Medtr2g009140 Medicago truncatula HOM05D005914 ORTHO05D007361 8.2e-145 517.7 376 69.4
Migut.E01476 Erythranthe guttata HOM05D005914 ORTHO05D007361 1.1e-144 517.3 372 68.5
EL10Ac2g02591 Beta vulgaris HOM05D005914 ORTHO05D007361 1.2e-143 513.8 382 66.8
VMungo0540G0716 Vigna mungo HOM05D005914 ORTHO05D007361 1.2e-143 513.8 390 68.5
Duzib150G0329 Durio zibethinus HOM05D005914 ORTHO05D007361 4.5e-143 511.9 387 68.0
Ca_00145_v3 Cicer arietinum L. HOM05D005914 ORTHO05D007361 5.9e-143 511.5 378 68.3
CAN.G98.27 Capsicum annuum HOM05D005914 ORTHO05D007361 2.9e-142 509.2 376 66.8
Solyc08g067070.3 Solanum lycopersicum HOM05D005914 ORTHO05D007361 4.7e-140 501.9 386 66.6
Sopen08g021020 Solanum pennellii HOM05D005914 ORTHO05D007361 4.7e-140 501.9 384 66.9
SGA_v2.0_scaffold4G02186 Striga asiatica HOM05D005914 ORTHO05D007361 7.9e-140 501.1 378 65.3
PSO170G3156 Papaver somniferum HOM05D005914 ORTHO05D007361 5.1e-139 498.4 385 64.7
Prupe.1G473200 Prunus persica HOM05D005914 ORTHO05D007361 1.5e-138 496.9 318 79.6
Lsat_1_v5_gn_6_22181 Lactuca sativa HOM05D005914 ORTHO05D007361 5.7e-138 495.0 368 66.8
ECA233G4604 Erigeron canadensis HOM05D005914 ORTHO05D007361 3.7e-137 492.3 362 67.7
FAN20G2480 Fragaria x ananassa HOM05D005914 ORTHO05D007361 1.4e-136 490.3 370 71.9
DCAR_006234 Daucus carota HOM05D005914 ORTHO05D007361 1.8e-136 490.0 411 61.8
Sed0010731 Sechium edule HOM05D005914 ORTHO05D007361 5.3e-136 488.4 363 66.7
COL.COLO4_23983 Corchorus olitorius HOM05D005914 ORTHO05D007361 1.2e-135 487.3 387 66.9
Nn2g11936 Nelumbo nucifera HOM05D005914 ORTHO05D007361 3.5e-135 485.7 355 68.7
Gohir.D08G257400 Gossypium hirsutum HOM05D005914 ORTHO05D007361 2.9e-134 482.6 383 65.8
Nitab4.5_0000151g0200 Nicotiana tabacum HOM05D005914 ORTHO05D007361 7.2e-133 478.0 388 62.9
arahy.Tifrunner.gnm1.ann1.71PCZ9 Arachis hypogaea HOM05D005914 ORTHO05D007361 9.4e-133 477.6 356 68.0
Nitab4.5_0001669g0040 Nicotiana tabacum HOM05D005914 ORTHO05D007361 9.4e-133 477.6 384 63.5
CDE04G0852 Ceratophyllum demersum HOM05D005914 ORTHO05D007361 6.3e-129 464.9 395 59.2
BolC7t44763H Brassica oleracea HOM05D005914 ORTHO05D007361 9.1e-128 461.1 348 67.5
unitig_747.g21653 Utricularia gibba HOM05D005914 ORTHO05D007361 1.6e-127 460.3 380 60.3
HPP92_012620 Vanilla planifolia HOM05D005914 ORTHO05D007361 2.9e-126 456.1 384 60.2
Zm00001eb358040 Zea mays HOM05D005914 ORTHO05D007361 4.7e-124 448.7 379 61.5
SalBow2G3472 Salvia bowleyana HOM05D005914 ORTHO05D007361 1.5e-122 443.7 377 62.1
Peaxi162Scf00341g00624 Petunia axillaris HOM05D005914 ORTHO05D007361 1.6e-119 433.7 335 65.4
AUR62024878 Chenopodium quinoa HOM05D005914 ORTHO05D007361 6.5e-118 428.3 360 61.4
TPR.G25250 Trifolium pratense HOM05D005914 ORTHO05D008190 2.3e-115 419.9 308 67.9
Manes.16G119400 Manihot esculenta HOM05D005914 ORTHO05D007361 3.7e-113 412.5 316 66.1
Dinv11618 Davidia involucrata HOM05D005914 ORTHO05D007361 4.1e-112 409.1 300 67.7
CsaV3_2G031850 Cucumis sativus L. HOM05D005914 ORTHO05D007361 3.0e-107 392.9 396 53.3
Mapoly0011s0185 Marchantia polymorpha HOM05D005914 ORTHO05D007361 1.8e-104 383.6 452 47.1
Pp3c12_2410 Physcomitrium patens HOM05D005914 ORTHO05D007361 1.1e-101 374.4 463 44.7
SMO146G0196 Selaginella moellendorffii HOM05D005914 ORTHO05D007361 4.3e-101 372.5 378 51.6
Phvul.006G205000 Phaseolus vulgaris HOM05D005914 ORTHO05D007361 1.8e-99 367.1 297 66.0
ATR0815G040 Amborella trichopoda HOM05D005914 ORTHO05D007361 2.6e-98 363.2 341 55.7
AUR62030669 Chenopodium quinoa HOM05D005914 ORTHO05D007361 7.0e-96 355.1 314 58.9
MD08G1143700 Malus domestica HOM05D005914 ORTHO05D007361 4.3e-93 345.9 280 65.0
PSO455G0041 Papaver somniferum HOM05D005914 ORTHO05D007361 5.6e-93 345.5 298 60.7
RcHm_v2.0_Chr1g0355831 Rosa chinensis HOM05D005914 ORTHO05D007361 1.2e-87 327.8 253 68.0
CBR_g3173 Chara braunii HOM05D005914 ORTHO05D007361 9.9e-82 308.1 543 37.6
Os01g0612000 Oryza sativa ssp. japonica HOM05D005914 ORTHO05D007361 2.3e-78 297.0 279 55.9
CARHR187910 Cardamine hirsuta HOM05D005914 ORTHO05D007361 1.5e-77 294.3 167 82.0
MSTRG.13986 Avicennia marina HOM05D005914 ORTHO05D007361 1.2e-76 291.2 241 61.8
Cpa.g.sc91.41 Carica papaya HOM05D005914 ORTHO05D007361 1.4e-75 287.7 171 80.7
MBI04_g29855_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 2.0e-74 283.9 263 58.2
PRCOL_00003212 Prasinoderma coloniale HOM05D005914 ORTHO05D007361 1.2e-71 274.6 419 39.6
MCO14G456 Micromonas commoda HOM05D005914 ORTHO05D007361 1.1e-69 268.1 389 39.8
AagrBONN_evm.TU.Sc2ySwM_228.810 Anthoceros agrestis HOM05D005914 ORTHO05D007361 1.6e-68 264.2 301 48.8
MBI04_g46184_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 1.4e-67 261.2 343 46.4
MD15G1439700 Malus domestica HOM05D005914 ORTHO05D007361 1.8e-67 260.8 404 43.3
Lj7C718G14 Lonicera japonica HOM05D005914 ORTHO05D007361 2.4e-64 250.4 272 50.4
Ah.12g063960 Amaranthus hybridus HOM05D005914 ORTHO05D007361 7.1e-64 248.8 153 77.1
Hma1.2p1_0000F.1_g000780 Hydrangea macrophylla HOM05D005914 ORTHO05D007361 2.8e-52 210.3 217 54.8
Glyma.08G177800 Glycine max HOM05D005914 ORTHO05D007361 1.1e-48 198.4 198 53.0
MCO11G560 Micromonas commoda HOM05D005914 ORTHO05D007361 2.0e-42 177.6 400 31.8
SEGI_35502 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 1.0e-41 175.3 111 73.9
Nitab4.5_0003498g0080 Nicotiana tabacum HOM05D005914 ORTHO05D007361 7.2e-40 169.1 114 72.8
CAN.G374.12 Capsicum annuum HOM05D005914 ORTHO05D007361 7.7e-34 149.1 309 34.3
PGR031G2948 Punica granatum HOM05D005914 ORTHO05D007361 6.5e-33 146.0 82 81.7
Sc09g0008460 Simmondsia chinensis HOM05D005914 ORTHO05D007361 7.9e-31 139.0 141 50.4
Cre12.g484600 Chlamydomonas reinhardtii HOM05D005914 ORTHO05D007361 1.8e-30 137.9 174 43.1
Oeu033137.1 Olea europaea HOM05D005914 ORTHO05D007361 1.7e-28 131.3 93 69.9
Sc09g0008580 Simmondsia chinensis HOM05D005914 ORTHO05D007361 9.1e-27 125.6 80 73.8
Sc09g0008440 Simmondsia chinensis HOM05D005914 ORTHO05D007361 4.5e-26 123.2 80 70.0
Sc09g0008450 Simmondsia chinensis HOM05D005914 ORTHO05D007361 8.5e-25 119.0 80 72.5
TPR.G22731 Trifolium pratense HOM05D005914 ORTHO05D007361 3.7e-20 103.6 66 75.8
Aqoxy7G02061 Aquilegia oxysepala HOM05D005914 ORTHO05D007361 1.1e-19 102.1 61 72.1
MD08G1143600 Malus domestica HOM05D005914 ORTHO05D007361 6.5e-17 92.8 66 69.7
SEGI_14251 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 1.9e-16 91.3 64 67.2
MBI04_g10409_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 1.6e-15 88.2 52 71.2
MBI04_g46185_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 1.6e-15 88.2 52 71.2
SEGI_16557 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 1.4e-14 85.1 58 69.0
Sc09g0008540 Simmondsia chinensis HOM05D002899 ORTHO05D003850 1.8e-14 84.7 49 77.6
Ah.12g063950 Amaranthus hybridus HOM05D005914 ORTHO05D007361 2.2e-12 77.8 125 36.0
MD08G1144900 Malus domestica HOM05D005914 ORTHO05D007361 3.5e-10 70.5 84 44.0
Lj7A718T66 Lonicera japonica HOM05D005914 ORTHO05D007361 1.1e-08 65.5 73 49.3
Sc09g0008600 Simmondsia chinensis HOM05D005914 ORTHO05D007361 1.5e-08 65.1 66 56.1
Glyma.08G177700 Glycine max HOM05D005914 ORTHO05D007361 1.0e-06 58.9 28 89.3
Ah.12g063940 Amaranthus hybridus HOM05D005914 ORTHO05D007361 1.8e-06 58.2 39 66.7
MD08G1143500 Malus domestica HOM05D005914 ORTHO05D007361 1.8e-06 58.2 66 56.1


User provided reference genes

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