Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.9e-125 452.6 238 100.0
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 7.1e-125 450.7 238 99.6
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 6.0e-124 447.6 238 98.7
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 6.7e-123 444.1 238 97.9
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.9e-122 442.6 238 97.9
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 3.1e-120 435.3 238 96.6
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 1.4e-109 399.8 238 89.5
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 7.2e-109 397.5 238 88.7
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 8.2e-97 357.5 243 77.4
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 1.3e-94 350.1 242 78.1
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 3.2e-93 345.5 243 76.5
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 2.1e-92 342.8 240 76.7
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 4.7e-92 341.7 238 76.5
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 6.7e-91 337.8 244 74.2
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.5e-90 336.7 244 74.6
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 2.6e-90 335.9 240 77.1
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 2.6e-90 335.9 242 73.6
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 3.3e-90 335.5 244 73.0
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 1.3e-89 333.6 240 76.2
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 1.7e-89 333.2 207 81.6
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 6.3e-89 331.3 244 72.1
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 8.2e-89 330.9 210 81.9
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 1.8e-88 329.7 243 73.3
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 2.4e-88 329.3 243 71.6
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 5.3e-88 328.2 244 71.3
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 7.0e-88 327.8 242 72.7
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 1.2e-87 327.0 249 70.7
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 1.6e-87 326.6 244 71.7
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 2.0e-87 326.2 240 75.0
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 2.6e-87 325.9 243 72.4
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 3.5e-87 325.5 240 73.8
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 4.5e-87 325.1 245 72.2
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 5.9e-87 324.7 207 80.7
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 5.9e-87 324.7 242 72.7
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 1.0e-86 323.9 243 73.3
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 1.0e-86 323.9 243 73.3
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 1.7e-86 323.2 242 71.9
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 2.2e-86 322.8 244 72.1
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 2.9e-86 322.4 243 73.7
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 3.8e-86 322.0 243 72.4
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 5.0e-86 321.6 243 71.6
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 5.0e-86 321.6 242 72.3
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 6.5e-86 321.2 239 71.5
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 6.5e-86 321.2 239 71.5
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 6.5e-86 321.2 209 79.4
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 6.5e-86 321.2 206 81.1
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 8.5e-86 320.9 243 72.8
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 8.5e-86 320.9 240 72.9
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 8.5e-86 320.9 241 70.5
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 1.1e-85 320.5 206 80.6
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 1.5e-85 320.1 239 71.1
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 3.2e-85 318.9 206 80.6
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 3.2e-85 318.9 207 80.2
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 3.2e-85 318.9 207 80.7
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 7.2e-85 317.8 240 70.0
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 1.6e-84 316.6 243 72.0
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 2.1e-84 316.2 243 70.4
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 3.6e-84 315.5 207 79.2
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 8.0e-84 314.3 247 70.0
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 1.0e-83 313.9 240 70.8
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.4e-83 313.5 241 69.3
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 1.4e-83 313.5 203 80.3
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 3.0e-83 312.4 233 70.4
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 4.0e-83 312.0 243 70.8
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 4.0e-83 312.0 206 79.1
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 5.2e-83 311.6 248 69.4
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 8.8e-83 310.8 206 79.1
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 1.2e-82 310.5 206 78.6
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 2.0e-82 309.7 240 68.8
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 3.3e-82 308.9 241 67.6
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 3.3e-82 308.9 204 78.9
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 1.3e-81 307.0 242 69.4
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 2.8e-81 305.8 240 69.6
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 3.7e-81 305.4 203 78.3
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 3.7e-81 305.4 244 67.2
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 4.8e-81 305.1 240 68.8
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 8.2e-81 304.3 241 67.6
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 1.1e-80 303.9 240 67.5
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 1.4e-80 303.5 197 79.7
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 1.4e-80 303.5 243 67.9
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 1.8e-80 303.1 205 75.6
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 3.1e-80 302.4 230 69.1
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 4.1e-80 302.0 233 71.7
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 5.3e-80 301.6 207 75.8
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 7.0e-80 301.2 229 72.1
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 1.2e-79 300.4 243 69.1
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 1.2e-79 300.4 233 71.2
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 1.2e-79 300.4 212 73.6
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 1.6e-79 300.1 206 74.8
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 1.6e-79 300.1 198 77.8
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 3.5e-79 298.9 240 66.7
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 3.5e-79 298.9 194 80.4
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 4.5e-79 298.5 240 67.9
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 1.7e-78 296.6 240 68.8
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 2.2e-78 296.2 203 76.4
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 6.5e-78 294.7 200 76.0
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 8.5e-78 294.3 229 71.2
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 1.1e-77 293.9 240 65.4
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 5.5e-77 291.6 237 67.9
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 7.2e-77 291.2 243 66.7
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 9.4e-77 290.8 237 67.1
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 9.4e-77 290.8 200 75.5
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 3.6e-76 288.9 237 66.7
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 1.0e-75 287.3 237 66.2
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 1.4e-75 287.0 237 66.7
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 1.4e-75 287.0 230 68.3
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 1.4e-75 287.0 209 71.8
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 3.0e-75 285.8 237 65.4
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 3.0e-75 285.8 237 65.4
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 5.2e-75 285.0 237 66.7
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 8.8e-75 284.3 212 69.3
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 2.0e-74 283.1 243 65.8
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 3.4e-74 282.3 242 64.0
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 7.5e-74 281.2 237 64.6
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 7.5e-74 281.2 237 64.6
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 1.7e-73 280.0 245 63.3
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 2.7e-71 272.7 244 60.7
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 2.7e-71 272.7 224 71.0
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 1.3e-70 270.4 184 76.1
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 1.3e-70 270.4 211 71.1
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 2.3e-70 269.6 204 69.6
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 6.6e-70 268.1 239 61.1
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 1.4e-67 260.4 179 75.4
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 5.2e-67 258.5 228 62.3
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 1.3e-65 253.8 165 83.0
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 2.4e-64 249.6 198 67.2
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 3.1e-64 249.2 226 60.2
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 1.3e-57 227.3 235 55.7
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 4.9e-57 225.3 238 60.5
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 5.4e-56 221.9 152 76.3
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 8.6e-54 214.5 192 60.4
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 1.1e-53 214.2 134 84.3
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 2.9e-49 199.5 112 91.1
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 5.1e-38 162.2 104 76.9
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 5.6e-37 158.7 177 51.4
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 4.0e-35 152.5 85 97.6
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 1.2e-34 151.0 174 50.0
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 2.3e-30 136.7 87 79.3
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 5.6e-29 132.1 188 41.0
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 8.1e-28 128.3 120 59.2
FAN23G1155 Fragaria x ananassa HOM05D001255 ORTHO05D011996 9.3e-24 114.8 75 86.7
FAN20G1163 Fragaria x ananassa HOM05D001255 ORTHO05D006136 3.0e-22 109.8 78 78.2
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 1.6e-20 104.0 91 65.9
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 9.9e-18 94.7 57 80.7
FAN23G1307 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.2e-17 93.6 57 87.7
FAN23G2223 Fragaria x ananassa HOM05D001255 ORTHO05D006136 8.4e-17 91.7 51 94.1
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 2.4e-16 90.1 201 31.3
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 8.7e-14 81.6 220 28.2


User provided reference genes

Program Settings