Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G2061 Fragaria x ananassa HOM05D003406 ORTHO05D004026 6.6e-227 790.4 411 100.0
FAN14G5538 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.7e-78 297.4 296 55.1
FAN26G1924 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.7e-78 297.4 318 60.4
FvH4_6g22190 Fragaria vesca HOM05D003406 ORTHO05D004026 9.6e-77 291.6 289 55.7
FAN28G2604 Fragaria x ananassa HOM05D003406 ORTHO05D004026 5.1e-70 269.2 129 95.3
Sabra01G0019600 Salix brachista HOM05D003406 ORTHO05D004026 4.8e-68 262.7 341 46.0
FAN19G0629 Fragaria x ananassa HOM05D003406 ORTHO05D004026 5.3e-67 259.2 129 93.0
FAN09G0535 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.4e-64 250.4 319 45.1
FAN06G4607 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.9e-56 224.2 334 44.3
MD02G1288700 Malus domestica HOM05D003406 ORTHO05D004026 7.1e-56 222.2 334 50.6
Dinv09276 Davidia involucrata HOM05D003406 ORTHO05D004026 6.0e-55 219.2 296 45.9
unitig_26.g9605 Utricularia gibba HOM05D003406 ORTHO05D004026 5.3e-51 206.1 302 41.1
RcHm_v2.0_Chr5g0010661 Rosa chinensis HOM05D003406 ORTHO05D004026 9.0e-51 205.3 129 74.4
Actinidia10165 Actinidia chinensis HOM05D003406 ORTHO05D004026 1.2e-50 204.9 304 42.1
MBI02_g23406_MAGBIO Magnolia biondii HOM05D003406 ORTHO05D004026 1.3e-49 201.4 238 49.2
AagrBONN_evm.TU.Sc2ySwM_369.461 Anthoceros agrestis HOM05D003406 ORTHO05D004026 1.4e-48 198.0 271 41.0
ClCG01G007460 Citrullus lanatus HOM05D003406 ORTHO05D004026 4.2e-48 196.4 362 44.2
FvH4_5g25490 Fragaria vesca HOM05D003406 ORTHO05D004026 6.0e-47 192.6 319 46.1
FvH4_5g25550 Fragaria vesca HOM05D003406 ORTHO05D004026 6.0e-47 192.6 319 46.1
FAN13G0969 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.8e-46 191.0 319 46.1
FAN18G4486 Fragaria x ananassa HOM05D003406 ORTHO05D004026 6.7e-46 189.1 319 45.8
BolC3t13203H Brassica oleracea HOM05D003406 ORTHO05D004026 1.9e-45 187.6 251 44.6
arahy.Tifrunner.gnm1.ann1.07MYST Arachis hypogaea HOM05D003406 ORTHO05D004026 7.4e-45 185.7 239 44.4
RcHm_v2.0_Chr3g0486211 Rosa chinensis HOM05D003406 ORTHO05D004026 9.6e-45 185.3 306 37.6
RcHm_v2.0_Chr4g0404661 Rosa chinensis HOM05D003406 ORTHO05D004026 2.1e-44 184.1 291 47.8
Peaxi162Scf00341g00714 Petunia axillaris HOM05D003406 ORTHO05D004026 6.3e-44 182.6 321 37.4
SHI03990 Sapria himalayana HOM05D003406 ORTHO05D004026 8.2e-44 182.2 233 43.8
SGA_v2.0_scaffold124G33625 Striga asiatica HOM05D003406 ORTHO05D004026 8.2e-44 182.2 244 43.4
FAN16G0123 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.4e-43 181.4 382 35.6
CDE04G3459 Ceratophyllum demersum HOM05D003406 ORTHO05D004026 4.1e-43 179.9 287 38.7
CARHR199960 Cardamine hirsuta HOM05D003406 ORTHO05D004026 1.5e-42 177.9 236 44.9
Nitab4.5_0000151g0240 Nicotiana tabacum HOM05D003406 ORTHO05D004026 1.3e-41 174.9 333 44.4
Nitab4.5_0001669g0120 Nicotiana tabacum HOM05D003406 ORTHO05D004026 1.3e-41 174.9 333 44.4
FvH4_7g02880 Fragaria vesca HOM05D003406 ORTHO05D004026 1.2e-39 168.3 136 64.7
FAN03G3378 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.2e-39 168.3 136 64.7
Prupe.2G034300 Prunus persica HOM05D003406 ORTHO05D004026 2.1e-39 167.5 136 64.0
Haze_26561 Corylus avellana HOM05D003406 ORTHO05D004026 3.5e-39 166.8 276 47.8
RcHm_v2.0_Chr1g0323831 Rosa chinensis HOM05D003406 ORTHO05D004026 4.6e-39 166.4 136 64.0
MD07G1038200 Malus domestica HOM05D003406 ORTHO05D004026 1.8e-38 164.5 136 62.5
Manes.11G004700 Manihot esculenta HOM05D003406 ORTHO05D004026 3.9e-38 163.3 136 62.5
Eucgr.G03238 Eucalyptus grandis HOM05D003406 ORTHO05D004026 8.7e-38 162.2 136 61.8
FAN06G0645 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.1e-37 161.8 245 39.6
Atru.chr12.1360 Acer truncatum HOM05D003406 ORTHO05D004026 1.5e-37 161.4 136 61.8
RcHm_v2.0_Chr3g0482821 Rosa chinensis HOM05D003406 ORTHO05D004026 1.9e-37 161.0 138 63.8
RcHm_v2.0_Chr3g0482981 Rosa chinensis HOM05D003406 ORTHO05D004026 1.9e-37 161.0 138 63.8
FAN16G0070 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.5e-37 160.6 245 39.6
Gohir.A10G183800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 2.5e-37 160.6 129 62.8
Gohir.D10G190800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 3.3e-37 160.2 129 62.8
GSVIVG01013527001 Vitis vinifera HOM05D003406 ORTHO05D004026 3.3e-37 160.2 136 61.8
Dinv32032 Davidia involucrata HOM05D003406 ORTHO05D004026 9.7e-37 158.7 136 61.8
Manes.04G160100 Manihot esculenta HOM05D003406 ORTHO05D004026 9.7e-37 158.7 134 60.4
CiPaw.14G007200 Carya illinoinensis HOM05D003406 ORTHO05D004026 1.3e-36 158.3 136 60.3
Ciclev10004445m.g Citrus clementina HOM05D003406 ORTHO05D004026 1.3e-36 158.3 136 61.8
Gorai.011G213900 Gossypium raimondii HOM05D003406 ORTHO05D004026 1.3e-36 158.3 129 62.0
Potri.001G026800 Populus trichocarpa HOM05D003406 ORTHO05D004026 1.3e-36 158.3 137 59.9
Duzib106G0689 Durio zibethinus HOM05D003406 ORTHO05D004026 2.2e-36 157.5 131 61.1
Aqoxy2G01593 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 2.8e-36 157.1 129 61.2
Hund13347 Selenicereus undatus HOM05D003406 ORTHO05D004026 2.8e-36 157.1 137 59.1
Duzib114G0281 Durio zibethinus HOM05D003406 ORTHO05D004026 3.7e-36 156.8 133 62.4
Actinidia06245 Actinidia chinensis HOM05D003406 ORTHO05D004026 6.3e-36 156.0 133 58.6
CANSAT25G0328 Cannabis sativa HOM05D003406 ORTHO05D004026 6.3e-36 156.0 141 58.9
CiPaw.13G012800 Carya illinoinensis HOM05D003406 ORTHO05D004026 6.3e-36 156.0 137 59.9
Thecc.10G162300 Theobroma cacao HOM05D003406 ORTHO05D004026 6.3e-36 156.0 133 62.4
Cc00_g06910 Coffea canephora HOM05D003406 ORTHO05D004026 8.2e-36 155.6 132 60.6
QL04p014603 Quercus lobata HOM05D003406 ORTHO05D004026 1.1e-35 155.2 137 59.1
QL04p014965 Quercus lobata HOM05D003406 ORTHO05D004026 1.1e-35 155.2 137 59.1
CSS0014544 Camellia sinensis var. sinensis HOM05D003406 ORTHO05D004026 1.4e-35 154.8 134 59.7
Lj7A583T43 Lonicera japonica HOM05D003406 ORTHO05D004026 1.4e-35 154.8 136 59.6
TAR369G0157 Trochodendron aralioides HOM05D003406 ORTHO05D004026 1.8e-35 154.5 136 60.3
Potri.003G197900 Populus trichocarpa HOM05D003406 ORTHO05D004026 2.4e-35 154.1 134 59.0
Cfa010885 Carpinus fangiana HOM05D003406 ORTHO05D004026 3.1e-35 153.7 136 58.8
Haze_03074 Corylus avellana HOM05D003406 ORTHO05D004026 3.1e-35 153.7 136 58.8
Nn7g36639 Nelumbo nucifera HOM05D003406 ORTHO05D004026 4.1e-35 153.3 135 58.5
EL10Ac2g02817 Beta vulgaris HOM05D003406 ORTHO05D004026 5.3e-35 152.9 137 58.4
Potri.T125206 Populus trichocarpa HOM05D003406 ORTHO05D004026 6.9e-35 152.5 134 58.2
TWI63G0701 Tripterygium wilfordii HOM05D003406 ORTHO05D004026 9.0e-35 152.1 136 58.1
AUR62026878 Chenopodium quinoa HOM05D003406 ORTHO05D004026 1.5e-34 151.4 140 57.9
Sc14g0005750 Simmondsia chinensis HOM05D003406 ORTHO05D004026 1.5e-34 151.4 137 57.7
PSO561G0002 Papaver somniferum HOM05D003406 ORTHO05D004026 2.0e-34 151.0 133 57.1
PGR031G1802 Punica granatum HOM05D003406 ORTHO05D004026 2.0e-34 151.0 133 56.4
ECA248G2072 Erigeron canadensis HOM05D003406 ORTHO05D004026 2.6e-34 150.6 136 58.1
VMungo1127G0085 Vigna mungo HOM05D003406 ORTHO05D004026 2.6e-34 150.6 215 43.3
FAN27G1752 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.5e-34 149.8 246 38.6
arahy.Tifrunner.gnm1.ann1.P8HZNX Arachis hypogaea HOM05D003406 ORTHO05D004026 1.3e-33 148.3 134 56.7
PSO063G0746 Papaver somniferum HOM05D003406 ORTHO05D004026 1.3e-33 148.3 133 56.4
ATR0745G072 Amborella trichopoda HOM05D003406 ORTHO05D004026 1.7e-33 147.9 136 59.6
MSTRG.16987 Avicennia marina HOM05D003406 ORTHO05D004026 1.7e-33 147.9 137 58.4
AUR62037187 Chenopodium quinoa HOM05D003406 ORTHO05D004026 1.7e-33 147.9 140 56.4
Aqoxy4G02704 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 2.2e-33 147.5 135 57.0
Migut.B01223 Erythranthe guttata HOM05D003406 ORTHO05D004026 2.9e-33 147.1 136 56.6
MCO04G412 Micromonas commoda HOM05D003406 ORTHO05D004026 2.9e-33 147.1 267 35.2
MELO3C005161.2 Cucumis melo HOM05D003406 ORTHO05D004026 6.5e-33 146.0 133 55.6
FAN09G3514 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.5e-33 145.6 377 31.8
HPP92_025009 Vanilla planifolia HOM05D003406 ORTHO05D004026 8.5e-33 145.6 133 53.4
CsaV3_5G024420 Cucumis sativus L. HOM05D003406 ORTHO05D004026 1.1e-32 145.2 133 55.6
Glyma.13G198200 Glycine max HOM05D003406 ORTHO05D004026 1.1e-32 145.2 134 58.2
THA.LOC104826724 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 1.1e-32 145.2 135 56.3
TPR.G36971 Trifolium pratense HOM05D003406 ORTHO05D004026 1.1e-32 145.2 165 51.5
HanXRQChr01g0004511 Helianthus annuus HOM05D003406 ORTHO05D004026 1.4e-32 144.8 132 56.8
HanXRQChr15g0463071 Helianthus annuus HOM05D003406 ORTHO05D004026 1.4e-32 144.8 132 56.8
Rhsim07G0066700 Rhododendron simsii HOM05D003406 ORTHO05D004026 1.4e-32 144.8 464 33.6
SalBow5G0382 Salvia bowleyana HOM05D003406 ORTHO05D004026 1.4e-32 144.8 138 55.8
SalBow5G3900 Salvia bowleyana HOM05D003406 ORTHO05D004026 1.4e-32 144.8 138 55.8
Lsat_1_v5_gn_1_115021 Lactuca sativa HOM05D003406 ORTHO05D004026 1.9e-32 144.4 136 57.4
Lalb_Chr19g0132381 Lupinus albus HOM05D003406 ORTHO05D004026 2.5e-32 144.1 138 55.1
PSO782G3285 Papaver somniferum HOM05D003406 ORTHO05D004026 2.5e-32 144.1 238 40.8
SEGI_30282 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 2.5e-32 144.1 146 50.7
THA.LOC104819128 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 2.5e-32 144.1 133 54.9
Sed0018149 Sechium edule HOM05D003406 ORTHO05D004026 4.2e-32 143.3 133 54.1
FAN11G1841 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.2e-32 142.5 244 38.1
BcaB01g05356 Brassica carinata HOM05D003406 ORTHO05D004026 9.4e-32 142.1 135 56.3
Lj3g0018542 Lotus japonicus HOM05D003406 ORTHO05D004026 1.2e-31 141.7 131 55.0
A03p06010 Brassica napus HOM05D003406 ORTHO05D004026 1.6e-31 141.4 135 55.6
BraA03t09938Z Brassica rapa HOM05D003406 ORTHO05D004026 1.6e-31 141.4 135 55.6
Ca_23943_v3 Cicer arietinum L. HOM05D003406 ORTHO05D004026 1.6e-31 141.4 131 54.2
Glyma.15G236500 Glycine max HOM05D003406 ORTHO05D004026 1.6e-31 141.4 135 55.6
Thhalv10012890m.g Eutrema salsugineum HOM05D003406 ORTHO05D004026 2.1e-31 141.0 134 55.2
Lalb_Chr01g0007801 Lupinus albus HOM05D003406 ORTHO05D004026 2.1e-31 141.0 138 55.8
Zm00001eb140970 Zea mays HOM05D003406 ORTHO05D004026 2.1e-31 141.0 133 51.9
FAN19G1643 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.7e-31 140.6 252 38.5
AL6G24100 Arabidopsis lyrata HOM05D003406 ORTHO05D004026 4.6e-31 139.8 134 54.5
Phvul.011G207400 Phaseolus vulgaris HOM05D003406 ORTHO05D004026 4.6e-31 139.8 134 55.2
Psat4g192120 Pisum sativum HOM05D003406 ORTHO05D004026 4.6e-31 139.8 138 55.1
C03p07050 Brassica napus HOM05D003406 ORTHO05D004026 2.3e-30 137.5 135 54.8
Hma1.2p1_1396F.1_g280640 Hydrangea macrophylla HOM05D003406 ORTHO05D004026 2.3e-30 137.5 168 44.6
AT5G13480 Arabidopsis thaliana HOM05D003406 ORTHO05D004026 3.9e-30 136.7 129 52.7
Medtr8g038550 Medicago truncatula HOM05D003406 ORTHO05D004026 3.3e-29 133.7 139 53.2
Carub.0006s1164 Capsella rubella HOM05D003406 ORTHO05D004026 4.3e-29 133.3 130 52.3
vmacro13749 Vaccinium macrocarpon HOM05D003406 ORTHO05D004026 9.7e-29 132.1 379 30.6
AUR62037193 Chenopodium quinoa HOM05D003406 ORTHO05D015410 1.8e-27 127.9 159 44.0
CBR_g16799 Chara braunii HOM05D003406 ORTHO05D004026 2.4e-27 127.5 84 64.3
CBR_g22487 Chara braunii HOM05D003406 ORTHO05D004026 2.4e-27 127.5 84 65.5
Cre06.g251951 Chlamydomonas reinhardtii HOM05D003406 ORTHO05D004026 2.4e-27 127.5 258 32.6
Mapoly0029s0111 Marchantia polymorpha HOM05D003406 ORTHO05D004026 4.1e-27 126.7 74 75.7
PRCOL_00004312 Prasinoderma coloniale HOM05D003406 ORTHO05D004026 1.7e-25 121.3 265 27.9
SMO353G0072 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 2.9e-25 120.6 135 47.4
FAN23G2758 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.1e-24 118.6 161 41.0
Sp6g30540 Schrenkiella parvula HOM05D003406 ORTHO05D004026 1.9e-24 117.9 135 48.9
SMO231G0014 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 1.9e-24 117.9 150 45.3
Pp3c16_16500 Physcomitrium patens HOM05D003406 ORTHO05D004026 4.2e-24 116.7 137 48.9
FAN19G2649 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.7e-23 113.2 215 35.8
Solyc08g067040.4 Solanum lycopersicum HOM05D003406 ORTHO05D004026 3.0e-22 110.5 131 48.9
Sopen08g020990 Solanum pennellii HOM05D003406 ORTHO05D004026 3.0e-22 110.5 131 48.9
AUR62037192 Chenopodium quinoa HOM05D003406 ORTHO05D004026 1.3e-20 105.1 118 51.7
BraA02t05170Z Brassica rapa HOM05D003406 ORTHO05D004026 2.2e-20 104.4 135 46.7
BcaNung01887 Brassica carinata HOM05D003406 ORTHO05D004026 2.8e-20 104.0 135 45.9
BcaNung01149 Brassica carinata HOM05D003406 ORTHO05D004026 6.3e-20 102.8 135 45.9
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 6.3e-20 102.8 135 45.9
BolC2t06560H Brassica oleracea HOM05D003406 ORTHO05D004026 6.3e-20 102.8 135 45.9
A02p01970 Brassica napus HOM05D003406 ORTHO05D004026 1.1e-19 102.1 135 46.7
TPR.G36904 Trifolium pratense HOM05D003406 ORTHO05D004026 5.3e-19 99.8 117 45.3
TPR.G24634 Trifolium pratense HOM05D003406 ORTHO05D004026 4.5e-18 96.7 120 46.7
FAN14G3483 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.0e-17 95.5 120 45.8
FAN11G4032 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.9e-17 94.0 122 44.3
Aa31LG11G7380 Aethionema arabicum HOM05D003406 ORTHO05D004026 3.8e-17 93.6 112 48.2
SEGI_34701 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 3.8e-17 93.6 64 67.2
Sabra03G0147300 Salix brachista HOM05D003406 ORTHO05D004026 1.2e-15 88.6 157 39.5
DCAR_031832 Daucus carota HOM05D003406 ORTHO05D004026 3.7e-12 77.0 88 46.6
ATR0568G096 Amborella trichopoda HOM05D003406 ORTHO05D004026 4.8e-12 76.6 114 45.6
Ah.10g030390 Amaranthus hybridus HOM05D003406 ORTHO05D004026 6.1e-07 59.7 44 61.4
arahy.Tifrunner.gnm1.ann1.0Z7T57 Arachis hypogaea HOM05D003913 ORTHO05D004803 1.0e-06 58.9 142 31.0
arahy.Tifrunner.gnm1.ann1.F1WV5B Arachis hypogaea HOM05D003913 ORTHO05D004803 2.3e-06 57.8 142 31.0
Nitab4.5_0007601g0010 Nicotiana tabacum HOM05D000645 ORTHO05D000494 8.8e-06 55.8 250 24.8


User provided reference genes

Program Settings