Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G1589 Fragaria x ananassa HOM05D005254 ORTHO05D007557 1.6e-247 859.0 428 100.0
FAN28G1559 Fragaria x ananassa HOM05D005254 ORTHO05D007557 6.4e-217 757.3 388 97.7
FvH4_1g27060 Fragaria vesca HOM05D005254 ORTHO05D007557 8.4e-217 756.9 387 97.7
FAN26G2945 Fragaria x ananassa HOM05D005254 ORTHO05D007557 8.4e-217 756.9 387 97.4
FAN19G0333 Fragaria x ananassa HOM05D005254 ORTHO05D007557 1.9e-216 755.7 387 97.4
RcHm_v2.0_Chr3g0487381 Rosa chinensis HOM05D005254 ORTHO05D007557 7.6e-202 707.2 387 90.7
MD17G1277500 Malus domestica HOM05D005254 ORTHO05D007557 2.6e-178 629.0 387 79.6
MD09G1284300 Malus domestica HOM05D005254 ORTHO05D007557 9.4e-176 620.5 386 78.5
Prupe.3G010500 Prunus persica HOM05D005254 ORTHO05D007557 3.7e-172 608.6 366 82.8
Haze_05067 Corylus avellana HOM05D005254 ORTHO05D007557 6.9e-171 604.4 387 76.2
CANSAT25G1517 Cannabis sativa HOM05D005254 ORTHO05D007557 1.0e-169 600.5 387 76.0
Cfa005773 Carpinus fangiana HOM05D005254 ORTHO05D007557 1.1e-168 597.0 387 75.5
Atru.chr5.974 Acer truncatum HOM05D005254 ORTHO05D007557 3.2e-168 595.5 387 75.5
QL12p019422 Quercus lobata HOM05D005254 ORTHO05D007557 3.6e-167 592.0 387 73.9
GSVIVG01028140001 Vitis vinifera HOM05D005254 ORTHO05D007557 3.9e-166 588.6 400 72.5
Ciclev10018561m.g Citrus clementina HOM05D005254 ORTHO05D007557 8.8e-166 587.4 387 74.9
Dinv10118 Davidia involucrata HOM05D005254 ORTHO05D007557 5.7e-165 584.7 386 73.1
Cpa.g.sc18.77 Carica papaya HOM05D005254 ORTHO05D007557 7.4e-165 584.3 387 72.6
CiPaw.07G119100 Carya illinoinensis HOM05D005254 ORTHO05D007557 1.7e-164 583.2 387 73.4
Hma1.2p1_0486F.1_g163430 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 1.7e-164 583.2 387 72.4
Hma1.2p1_0486F.1_g163440 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 1.7e-164 583.2 387 72.4
CSS0038291 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 2.8e-164 582.4 400 70.0
TAR633G1480 Trochodendron aralioides HOM05D005254 ORTHO05D007557 7.2e-160 567.8 387 71.1
Actinidia25861 Actinidia chinensis HOM05D005254 ORTHO05D007557 1.2e-159 567.0 388 71.4
Duzib133G0392 Durio zibethinus HOM05D005254 ORTHO05D007557 2.7e-159 565.8 387 71.3
Manes.05G014200 Manihot esculenta HOM05D005254 ORTHO05D007557 2.7e-159 565.8 402 68.2
Thecc.01G315800 Theobroma cacao HOM05D005254 ORTHO05D007557 1.0e-158 563.9 387 71.1
Potri.002G194000 Populus trichocarpa HOM05D005254 ORTHO05D007557 2.3e-158 562.8 400 68.8
TWI36G0433 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 4.4e-157 558.5 387 71.1
COL.COLO4_23211 Corchorus olitorius HOM05D005254 ORTHO05D007557 7.4e-157 557.8 427 65.3
Lj1g0000440 Lotus japonicus HOM05D005254 ORTHO05D007557 2.8e-156 555.8 394 68.5
Lsat_1_v5_gn_5_191360 Lactuca sativa HOM05D005254 ORTHO05D007557 3.7e-156 555.4 387 69.0
Medtr7g109730 Medicago truncatula HOM05D005254 ORTHO05D007557 4.8e-156 555.1 400 69.2
Rhsim01G0292000 Rhododendron simsii HOM05D005254 ORTHO05D007557 8.2e-156 554.3 387 68.5
arahy.Tifrunner.gnm1.ann1.72UXVZ Arachis hypogaea HOM05D005254 ORTHO05D007557 2.4e-155 552.7 400 67.2
arahy.Tifrunner.gnm1.ann1.AYF5PU Arachis hypogaea HOM05D005254 ORTHO05D007557 2.4e-155 552.7 400 67.0
Gorai.004G144800 Gossypium raimondii HOM05D005254 ORTHO05D007557 2.4e-155 552.7 387 70.5
Gohir.D08G140700 Gossypium hirsutum HOM05D005254 ORTHO05D007557 7.0e-155 551.2 387 70.5
Nitab4.5_0007407g0050 Nicotiana tabacum HOM05D005254 ORTHO05D007557 1.2e-154 550.4 387 68.7
THA.LOC104802150 Tarenaya hassleriana HOM05D005254 ORTHO05D007557 1.2e-154 550.4 387 69.0
CSS0023845 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 2.0e-154 549.7 382 69.1
PGR083G2196 Punica granatum HOM05D005254 ORTHO05D007557 2.0e-154 549.7 387 69.0
Gohir.A08G119800 Gossypium hirsutum HOM05D005254 ORTHO05D007557 5.9e-154 548.1 387 70.0
ECA248G2092 Erigeron canadensis HOM05D005254 ORTHO05D007557 7.7e-154 547.7 387 68.2
Glyma.03G220700 Glycine max HOM05D005254 ORTHO05D007557 1.0e-153 547.4 400 67.5
Ca_09219_v3 Cicer arietinum L. HOM05D005254 ORTHO05D007557 1.3e-153 547.0 400 67.5
vmacro15104 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 1.3e-153 547.0 392 68.1
TPR.G4086 Trifolium pratense HOM05D005254 ORTHO05D007557 2.2e-153 546.2 401 67.3
CsaV3_7G030070 Cucumis sativus L. HOM05D005254 ORTHO05D007557 2.9e-153 545.8 387 69.3
Solyc06g009530.3 Solanum lycopersicum HOM05D005254 ORTHO05D007557 5.0e-153 545.0 400 66.0
Glyma.19G217500 Glycine max HOM05D005254 ORTHO05D007557 6.5e-153 544.7 400 67.8
Peaxi162Scf00058g02631 Petunia axillaris HOM05D005254 ORTHO05D007557 1.5e-152 543.5 387 68.2
HanXRQChr01g0000761 Helianthus annuus HOM05D005254 ORTHO05D007557 1.9e-152 543.1 387 68.7
MBI18_g03638_MAGBIO Magnolia biondii HOM05D005254 ORTHO05D007557 2.5e-152 542.7 387 68.0
VMungo1383G0540 Vigna mungo HOM05D005254 ORTHO05D007557 4.2e-152 542.0 387 69.3
Lalb_Chr15g0078051 Lupinus albus HOM05D005254 ORTHO05D007557 5.5e-152 541.6 400 66.8
Nitab4.5_0000363g0240 Nicotiana tabacum HOM05D005254 ORTHO05D007557 5.5e-152 541.6 400 66.2
ClCG09G004990 Citrullus lanatus HOM05D005254 ORTHO05D007557 7.2e-152 541.2 387 69.8
Lalb_Chr04g0260001 Lupinus albus HOM05D005254 ORTHO05D007557 1.2e-151 540.4 400 68.5
Psat0s425g0240 Pisum sativum HOM05D005254 ORTHO05D007557 1.2e-151 540.4 400 66.8
Eucgr.H00999 Eucalyptus grandis HOM05D005254 ORTHO05D007557 2.1e-151 539.7 387 67.4
Nn3g21729 Nelumbo nucifera HOM05D005254 ORTHO05D007557 2.1e-151 539.7 387 67.2
MELO3C015914.2 Cucumis melo HOM05D005254 ORTHO05D007557 2.7e-151 539.3 387 69.0
CAN.G1280.35 Capsicum annuum HOM05D005254 ORTHO05D007557 8.0e-151 537.7 400 65.2
Sopen06g004190 Solanum pennellii HOM05D005254 ORTHO05D007557 1.0e-150 537.3 400 65.0
Sed0001136 Sechium edule HOM05D005254 ORTHO05D007557 1.4e-150 537.0 387 68.2
Lj1C15G16 Lonicera japonica HOM05D005254 ORTHO05D007557 3.0e-150 535.8 363 71.1
Phvul.001G214200 Phaseolus vulgaris HOM05D005254 ORTHO05D007557 3.0e-150 535.8 387 68.7
Cc01_g21580 Coffea canephora HOM05D005254 ORTHO05D007557 3.3e-149 532.3 388 66.5
Sed0015859 Sechium edule HOM05D005254 ORTHO05D007557 7.5e-149 531.2 387 69.8
Sc17g0000380 Simmondsia chinensis HOM05D005254 ORTHO05D007557 7.0e-147 524.6 400 63.0
CARHR172690 Cardamine hirsuta HOM05D005254 ORTHO05D007557 9.1e-147 524.2 387 66.1
Carub.0005s2908 Capsella rubella HOM05D005254 ORTHO05D007557 3.5e-146 522.3 387 66.1
Migut.N00932 Erythranthe guttata HOM05D005254 ORTHO05D007557 5.9e-146 521.5 400 63.5
Thhalv10005752m.g Eutrema salsugineum HOM05D005254 ORTHO05D007557 1.7e-145 520.0 387 65.6
Aqoxy5G02683 Aquilegia oxysepala HOM05D005254 ORTHO05D007557 2.2e-145 519.6 387 64.3
PSO170G0810 Papaver somniferum HOM05D005254 ORTHO05D007557 2.2e-145 519.6 387 65.6
Sp5g01040 Schrenkiella parvula HOM05D005254 ORTHO05D007557 2.2e-145 519.6 387 65.9
Sabra02G0162400 Salix brachista HOM05D005254 ORTHO05D007557 6.5e-145 518.1 447 60.2
PSO357G0205 Papaver somniferum HOM05D005254 ORTHO05D007557 1.1e-144 517.3 387 65.1
BraA09t40847Z Brassica rapa HOM05D005254 ORTHO05D007557 2.5e-144 516.2 387 65.1
Hund09648 Selenicereus undatus HOM05D005254 ORTHO05D007557 4.2e-144 515.4 407 61.9
BolC8t51301H Brassica oleracea HOM05D005254 ORTHO05D007557 5.5e-144 515.0 389 64.8
A09p54350 Brassica napus HOM05D005254 ORTHO05D007557 7.2e-144 514.6 387 64.9
C08p37230 Brassica napus HOM05D005254 ORTHO05D007557 9.4e-144 514.2 387 65.4
SalBow2G1139 Salvia bowleyana HOM05D005254 ORTHO05D007557 6.1e-143 511.5 400 63.5
AL5G45120 Arabidopsis lyrata HOM05D005254 ORTHO05D007557 1.4e-142 510.4 387 65.6
Aa31LG10G16290 Aethionema arabicum HOM05D005254 ORTHO05D007557 4.0e-142 508.8 400 63.8
AT3G62360 Arabidopsis thaliana HOM05D005254 ORTHO05D007557 1.5e-141 506.9 387 65.1
Ah.02g112410 Amaranthus hybridus HOM05D005254 ORTHO05D007557 6.3e-140 501.5 409 59.9
AUR62043231 Chenopodium quinoa HOM05D005254 ORTHO05D007557 1.1e-139 500.7 446 55.6
AUR62032507 Chenopodium quinoa HOM05D005254 ORTHO05D007557 4.1e-139 498.8 446 55.6
DCAR_018280 Daucus carota HOM05D005254 ORTHO05D007557 5.4e-139 498.4 387 64.6
ATR0693G194 Amborella trichopoda HOM05D005254 ORTHO05D007557 4.5e-138 495.4 387 61.8
MSTRG.17387 Avicennia marina HOM05D005254 ORTHO05D007557 1.9e-136 490.0 400 60.0
EL10As5g23556 Beta vulgaris HOM05D005254 ORTHO05D007557 8.9e-134 481.1 476 52.1
BcaC07g40720 Brassica carinata HOM05D005254 ORTHO05D007557 9.8e-133 477.6 368 63.9
Oeu049924.2 Olea europaea HOM05D005254 ORTHO05D007557 7.8e-130 468.0 389 61.2
SGA_v2.0_scaffold6G03340 Striga asiatica HOM05D005254 ORTHO05D007557 1.3e-129 467.2 406 56.7
unitig_22.g6696 Utricularia gibba HOM05D005254 ORTHO05D007557 1.2e-127 460.7 389 58.6
CDE01G0437 Ceratophyllum demersum HOM05D005254 ORTHO05D007557 2.1e-127 459.9 387 59.2
Zm00001eb340350 Zea mays HOM05D005254 ORTHO05D007557 1.2e-122 444.1 390 56.2
HPP92_011729 Vanilla planifolia HOM05D005254 ORTHO05D007557 2.5e-120 436.4 401 55.6
SEGI_30263 Sequoiadendron giganteum HOM05D005254 ORTHO05D007557 9.5e-120 434.5 407 54.5
Mapoly0002s0320 Marchantia polymorpha HOM05D005254 ORTHO05D007557 8.3e-108 394.8 394 51.0
Pp3c14_26400 Physcomitrium patens HOM05D005254 ORTHO05D007557 4.6e-106 389.0 435 45.7
SMO145G0116 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 3.4e-101 372.9 390 49.0
BcaC07g40722 Brassica carinata HOM05D005254 ORTHO05D007557 2.9e-100 369.8 407 52.1
FAN23G1174 Fragaria x ananassa HOM05D005254 ORTHO05D007557 4.9e-100 369.0 182 100.0
AagrBONN_evm.TU.Sc2ySwM_344.3074 Anthoceros agrestis HOM05D005254 ORTHO05D007557 5.3e-94 349.0 434 42.4
Os01g0300600 Oryza sativa ssp. japonica HOM05D005254 ORTHO05D007557 8.4e-92 341.7 256 64.8
CBR_g12556 Chara braunii HOM05D005254 ORTHO05D007557 1.7e-84 317.4 399 42.4
SMO145G0011 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 7.9e-82 308.5 372 46.2
BcaC08g45196 Brassica carinata HOM05D005254 ORTHO05D007557 6.7e-81 305.4 387 46.0
C06p28230 Brassica napus HOM05D005254 ORTHO05D007557 4.2e-75 286.2 394 43.4
Oeu031896.1 Olea europaea HOM05D005254 ORTHO05D007557 3.1e-70 270.0 387 42.9
Actinidia20982 Actinidia chinensis HOM05D005254 ORTHO05D007557 1.4e-54 218.0 183 57.4
BolC6t37993H Brassica oleracea HOM05D005254 ORTHO05D012489 1.5e-48 198.0 182 56.6
SalBow3G0325 Salvia bowleyana HOM05D005254 ORTHO05D007557 5.0e-28 129.8 93 64.5
SalBow2G0161 Salvia bowleyana HOM05D005254 ORTHO05D355854 3.5e-21 107.1 101 53.5
BcaC07g42749 Brassica carinata HOM05D005254 ORTHO05D007557 2.3e-20 104.4 138 43.5
LjContig00310g0001105 Lotus japonicus HOM05D005254 ORTHO05D007557 3.6e-18 97.1 79 60.8
FAN05G0641 Fragaria x ananassa HOM05D001868 ORTHO05D003985 1.9e-11 74.7 35 97.1
TWI18G0218 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 3.4e-08 63.9 43 67.4
Actinidia06365 Actinidia chinensis HOM05D005254 ORTHO05D055108 4.4e-08 63.5 52 51.9
FAN05G1065 Fragaria x ananassa HOM05D000053 ORTHO05D000448 8.3e-07 59.3 27 100.0
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 1.1e-06 58.9 27 100.0


User provided reference genes

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