Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G0750 Fragaria x ananassa HOM05D004674 ORTHO05D007261 0.0e+00 1453.3 760 100.0
FAN26G2871 Fragaria x ananassa HOM05D004674 ORTHO05D007261 0.0e+00 1382.1 765 94.8
FAN19G2260 Fragaria x ananassa HOM05D004674 ORTHO05D007261 0.0e+00 1342.0 765 93.7
FAN28G0143 Fragaria x ananassa HOM05D004674 ORTHO05D007261 0.0e+00 1327.4 765 91.8
RcHm_v2.0_Chr2g0100861 Rosa chinensis HOM05D004674 ORTHO05D007261 0.0e+00 1308.9 765 89.5
Prupe.7G158600 Prunus persica HOM05D004674 ORTHO05D007261 0.0e+00 1181.0 767 81.6
FvH4_1g12760 Fragaria vesca HOM05D004674 ORTHO05D007261 0.0e+00 1173.3 666 93.4
MD15G1256300 Malus domestica HOM05D004674 ORTHO05D007261 0.0e+00 1166.8 769 80.8
CANSAT01G1299 Cannabis sativa HOM05D004674 ORTHO05D007261 0.0e+00 1087.4 772 75.5
Cfa006896 Carpinus fangiana HOM05D004674 ORTHO05D007261 0.0e+00 1086.6 767 75.1
Haze_03856 Corylus avellana HOM05D004674 ORTHO05D007261 0.0e+00 1083.6 766 74.9
QL06p035418 Quercus lobata HOM05D004674 ORTHO05D007261 0.0e+00 1083.6 764 75.3
QL06p035429 Quercus lobata HOM05D004674 ORTHO05D007261 0.0e+00 1078.2 764 75.1
Ciclev10024970m.g Citrus clementina HOM05D004674 ORTHO05D007261 0.0e+00 1077.0 760 75.4
CiPaw.07G049300 Carya illinoinensis HOM05D004674 ORTHO05D007261 5.2e-312 1073.9 759 75.8
Gorai.007G201200 Gossypium raimondii HOM05D004674 ORTHO05D007261 1.0e-311 1073.2 762 74.7
COL.COLO4_22030 Corchorus olitorius HOM05D004674 ORTHO05D007261 2.3e-310 1068.5 760 74.3
Gohir.A11G182300 Gossypium hirsutum HOM05D004674 ORTHO05D007261 1.5e-309 1065.8 762 74.5
Eucgr.I02404 Eucalyptus grandis HOM05D004674 ORTHO05D007261 5.7e-309 1063.9 759 73.8
TAR376G0875 Trochodendron aralioides HOM05D004674 ORTHO05D007261 1.7e-308 1062.4 764 73.4
Gohir.D11G189100 Gossypium hirsutum HOM05D004674 ORTHO05D007261 1.4e-307 1059.3 770 73.5
Sabra07G0018000 Salix brachista HOM05D004674 ORTHO05D007261 4.1e-307 1057.7 763 74.3
Duzib264G1222 Durio zibethinus HOM05D004674 ORTHO05D007261 9.1e-307 1056.6 760 73.6
Cpa.g.sc6.166 Carica papaya HOM05D004674 ORTHO05D007261 1.2e-306 1056.2 770 73.2
VMungo0251G2099 Vigna mungo HOM05D004674 ORTHO05D007261 6.5e-305 1050.4 764 73.0
GSVIVG01018892001 Vitis vinifera HOM05D004674 ORTHO05D007261 1.4e-304 1049.3 768 73.2
Potri.007G021000 Populus trichocarpa HOM05D004674 ORTHO05D007261 7.2e-304 1047.0 762 74.1
Glyma.02G053800 Glycine max HOM05D004674 ORTHO05D007261 1.6e-303 1045.8 764 73.6
Atru.chr3.699 Acer truncatum HOM05D004674 ORTHO05D007261 1.8e-302 1042.3 763 73.1
Medtr8g076950 Medicago truncatula HOM05D004674 ORTHO05D007261 2.3e-302 1042.0 763 72.3
AT5G66420 Arabidopsis thaliana HOM05D004674 ORTHO05D007261 3.9e-302 1041.2 762 73.0
Sed0001139 Sechium edule HOM05D004674 ORTHO05D007261 6.7e-302 1040.4 761 71.9
CsaV3_6G046560 Cucumis sativus L. HOM05D004674 ORTHO05D007261 2.0e-301 1038.9 763 71.7
AL8G45110 Arabidopsis lyrata HOM05D004674 ORTHO05D007261 2.6e-301 1038.5 766 72.5
TPR.G21548 Trifolium pratense HOM05D004674 ORTHO05D007261 3.3e-301 1038.1 761 72.3
Migut.H02523 Erythranthe guttata HOM05D004674 ORTHO05D007261 4.4e-301 1037.7 770 71.6
THA.LOC104821303 Tarenaya hassleriana HOM05D004674 ORTHO05D007261 7.4e-301 1036.9 762 72.3
Lj4g0022194 Lotus japonicus HOM05D004674 ORTHO05D007261 2.2e-300 1035.4 759 72.7
Carub.0008s2809 Capsella rubella HOM05D004674 ORTHO05D007261 3.1e-299 1031.6 766 72.7
CARHR034750 Cardamine hirsuta HOM05D004674 ORTHO05D007261 9.1e-299 1030.0 759 72.7
Cc07_g09910 Coffea canephora HOM05D004674 ORTHO05D007261 1.5e-298 1029.2 753 71.6
Lalb_Chr16g0391041 Lupinus albus HOM05D004674 ORTHO05D007261 7.7e-298 1026.9 771 72.5
arahy.Tifrunner.gnm1.ann1.LKR1Y0 Arachis hypogaea HOM05D004674 ORTHO05D007261 1.3e-297 1026.2 768 72.0
BcaB02g10033 Brassica carinata HOM05D004674 ORTHO05D007261 2.9e-297 1025.0 759 71.5
Oeu019445.1 Olea europaea HOM05D004674 ORTHO05D007261 5.0e-297 1024.2 765 72.4
TWI09G0339 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 5.0e-297 1024.2 764 72.0
PGSC0003DMG400015491 Solanum tuberosum HOM05D004674 ORTHO05D007261 3.2e-296 1021.5 767 71.6
Ca_22335_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 1.6e-295 1019.2 754 72.1
ECA232G2544 Erigeron canadensis HOM05D004674 ORTHO05D000001 1.6e-295 1019.2 753 71.4
CSS0017426 Camellia sinensis var. sinensis HOM05D004674 ORTHO05D007261 2.1e-295 1018.8 758 71.5
CAN.G1019.6 Capsicum annuum HOM05D004674 ORTHO05D007261 2.1e-295 1018.8 763 71.6
Lsat_1_v5_gn_4_148020 Lactuca sativa HOM05D004674 ORTHO05D007261 2.7e-295 1018.5 758 71.1
Aqoxy5G01578 Aquilegia oxysepala HOM05D004674 ORTHO05D007261 3.6e-295 1018.1 774 69.8
Thhalv10003695m.g Eutrema salsugineum HOM05D004674 ORTHO05D007261 4.7e-295 1017.7 765 71.4
ClCG01G019830 Citrullus lanatus HOM05D004674 ORTHO05D007261 6.1e-295 1017.3 803 67.7
PGR119G1113 Punica granatum HOM05D004674 ORTHO05D007261 6.1e-295 1017.3 770 70.9
arahy.Tifrunner.gnm1.ann1.SG067W Arachis hypogaea HOM05D004674 ORTHO05D007261 8.0e-295 1016.9 797 69.8
Rhsim08G0121400 Rhododendron simsii HOM05D004674 ORTHO05D007261 2.3e-294 1015.4 805 67.7
MSTRG.2485 Avicennia marina HOM05D004674 ORTHO05D007261 3.0e-294 1015.0 770 70.8
C07p25500 Brassica napus HOM05D004674 ORTHO05D007261 3.0e-294 1015.0 757 72.0
HanXRQChr09g0261191 Helianthus annuus HOM05D004674 ORTHO05D007261 4.0e-294 1014.6 758 71.6
BcaC06g34697 Brassica carinata HOM05D004674 ORTHO05D007261 2.0e-293 1012.3 757 71.7
SalBow8G1271 Salvia bowleyana HOM05D004674 ORTHO05D007261 3.3e-293 1011.5 770 70.6
A07p17540 Brassica napus HOM05D004674 ORTHO05D007261 4.4e-293 1011.1 754 71.6
Nn5g29687 Nelumbo nucifera HOM05D004674 ORTHO05D007261 4.4e-293 1011.1 759 70.4
BolC7t43070H Brassica oleracea HOM05D004674 ORTHO05D007261 7.5e-293 1010.4 757 71.7
SalBow8G5199 Salvia bowleyana HOM05D004674 ORTHO05D007261 2.2e-292 1008.8 770 70.5
Sc16g0002550 Simmondsia chinensis HOM05D004674 ORTHO05D007261 1.4e-291 1006.1 756 71.0
Sopen02g013570 Solanum pennellii HOM05D004674 ORTHO05D007261 1.4e-291 1006.1 767 70.9
BraA07t29474Z Brassica rapa HOM05D004674 ORTHO05D007261 2.4e-291 1005.4 754 71.2
Solyc02g062560.3 Solanum lycopersicum HOM05D004674 ORTHO05D007261 9.1e-291 1003.4 767 70.5
DCAR_017308 Daucus carota HOM05D004674 ORTHO05D007261 1.6e-290 1002.7 767 69.9
SGA_v2.0_scaffold12G06320 Striga asiatica HOM05D004674 ORTHO05D007261 1.6e-290 1002.7 751 71.1
EL10As8g23909 Beta vulgaris HOM05D004674 ORTHO05D007261 5.9e-290 1000.7 763 70.1
Peaxi162Scf00008g03325 Petunia axillaris HOM05D004674 ORTHO05D007261 2.9e-289 998.4 758 70.7
Nitab4.5_0000136g0250 Nicotiana tabacum HOM05D004674 ORTHO05D007261 1.5e-288 996.1 791 68.3
HPP92_004908 Vanilla planifolia HOM05D004674 ORTHO05D007261 5.4e-283 977.6 770 66.8
PSO170G5809 Papaver somniferum HOM05D004674 ORTHO05D007261 5.9e-282 974.2 764 67.3
Hund16446 Selenicereus undatus HOM05D004674 ORTHO05D007261 7.7e-282 973.8 790 66.6
AUR62004091 Chenopodium quinoa HOM05D004674 ORTHO05D007261 1.3e-281 973.0 782 67.3
unitig_60.g25534 Utricularia gibba HOM05D004674 ORTHO05D007261 3.8e-281 971.5 756 67.6
Lj4A206G17 Lonicera japonica HOM05D004674 ORTHO05D007261 2.1e-279 965.7 710 73.7
Zm00001eb225760 Zea mays HOM05D004674 ORTHO05D007261 4.0e-278 961.4 751 68.2
Nitab4.5_0001525g0030 Nicotiana tabacum HOM05D004674 ORTHO05D007261 5.2e-278 961.1 722 71.2
Os06g0472400 Oryza sativa ssp. japonica HOM05D004674 ORTHO05D007261 1.5e-277 959.5 757 68.2
Phvul.003G256400 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 2.2e-276 955.7 665 75.6
Aa31LG1G14940 Aethionema arabicum HOM05D004674 ORTHO05D007261 1.5e-272 943.0 762 67.2
ATR0568G133 Amborella trichopoda HOM05D004674 ORTHO05D007261 8.0e-271 937.2 723 68.6
Manes.02G097100 Manihot esculenta HOM05D004674 ORTHO05D007261 1.0e-270 936.8 757 67.5
Sp2g30300 Schrenkiella parvula HOM05D004674 ORTHO05D007261 2.3e-270 935.6 662 74.0
AUR62007603 Chenopodium quinoa HOM05D004674 ORTHO05D007261 9.8e-261 903.7 712 68.1
SEGI_40838 Sequoiadendron giganteum HOM05D004674 ORTHO05D007261 1.0e-249 867.1 844 57.6
Pp3c20_8030 Physcomitrium patens HOM05D004674 ORTHO05D007261 2.7e-242 842.4 756 59.9
SMO367G0601 Selaginella moellendorffii HOM05D004674 ORTHO05D007261 1.0e-233 813.9 759 59.3
Actinidia35628 Actinidia chinensis HOM05D004674 ORTHO05D007261 8.1e-231 804.3 544 76.3
Dinv40019 Davidia involucrata HOM05D004674 ORTHO05D007261 1.5e-221 773.5 508 78.7
TAR376G0765 Trochodendron aralioides HOM05D004674 ORTHO05D007261 1.6e-215 753.4 746 58.0
Thecc.01G030000 Theobroma cacao HOM05D004674 ORTHO05D007261 9.0e-214 747.7 557 71.6
Psat4g095640 Pisum sativum HOM05D004674 ORTHO05D007261 2.2e-212 743.0 609 66.3
TAR376G0038 Trochodendron aralioides HOM05D004674 ORTHO05D007261 3.8e-212 742.3 564 70.7
AagrBONN_evm.TU.Sc2ySwM_344.2833 Anthoceros agrestis HOM05D004674 ORTHO05D007261 5.3e-182 642.1 620 56.5
TAR376G0961 Trochodendron aralioides HOM05D004674 ORTHO05D007261 5.3e-182 642.1 521 68.1
MELO3C007854.2 Cucumis melo HOM05D004674 ORTHO05D007261 1.8e-169 600.5 702 51.6
COL.COLO4_22029 Corchorus olitorius HOM05D004674 ORTHO05D007261 2.2e-167 593.6 455 69.5
Atru.chr3.652 Acer truncatum HOM05D004674 ORTHO05D007261 3.1e-158 563.1 474 65.6
Potri.005G120100 Populus trichocarpa HOM05D004674 ORTHO05D007261 9.5e-155 551.6 438 68.0
TWI09G0580 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 2.1e-154 550.4 437 67.0
Gohir.A11G182500 Gossypium hirsutum HOM05D004674 ORTHO05D007261 4.0e-137 493.0 424 63.4
PSO407G0425 Papaver somniferum HOM05D004674 ORTHO05D007261 7.1e-134 482.3 437 57.7
PSO170G6195 Papaver somniferum HOM05D004674 ORTHO05D007261 1.0e-132 478.4 439 57.9
Actinidia19204 Actinidia chinensis HOM05D004674 ORTHO05D007261 2.9e-127 460.3 402 61.7
Gorai.007G201400 Gossypium raimondii HOM05D004674 ORTHO05D007261 5.6e-123 446.0 354 67.8
MELO3C010392.2 Cucumis melo HOM05D004674 ORTHO05D007261 1.2e-122 444.9 494 53.2
Gohir.D11G189150 Gossypium hirsutum HOM05D004674 ORTHO05D007261 2.4e-121 440.7 354 67.2
Glyma.16G133867 Glycine max HOM05D004674 ORTHO05D007261 5.1e-100 369.8 234 81.6
MD02G1142700 Malus domestica HOM05D004674 ORTHO05D007261 1.6e-98 364.8 267 74.9
Psat0s3062g0040 Pisum sativum HOM05D004674 ORTHO05D007261 7.4e-91 339.3 240 74.6
Duzib147G1548 Durio zibethinus HOM05D004674 ORTHO05D007261 1.2e-72 278.9 230 66.1
Zm00001eb098830 Zea mays HOM05D004674 ORTHO05D007261 5.5e-62 243.4 178 68.0
Zm00001eb124970 Zea mays HOM05D004674 ORTHO05D007261 1.6e-61 241.9 173 72.8
vmacro19462 Vaccinium macrocarpon HOM05D004674 ORTHO05D007261 3.8e-55 220.7 132 85.6
Phvul.003G256200 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 8.5e-55 219.5 142 76.1
QL03p066021 Quercus lobata HOM05D004674 ORTHO05D029177 2.3e-52 211.5 320 43.4
Glyma.16G133933 Glycine max HOM05D004674 ORTHO05D007261 3.4e-51 207.6 156 67.9
TAR376G0549 Trochodendron aralioides HOM05D004674 ORTHO05D007261 3.7e-50 204.1 128 79.7
Lj4C205T11 Lonicera japonica HOM05D004674 ORTHO05D007261 7.7e-48 196.4 305 45.2
Ca_06503_v3 Cicer arietinum L. HOM05D000059 ORTHO05D000128 1.3e-47 195.7 253 47.4
Psat4g095680 Pisum sativum HOM05D004674 ORTHO05D007261 4.4e-43 180.6 107 86.0
Atru.chr3.653 Acer truncatum HOM05D004674 ORTHO05D007261 2.0e-40 171.8 105 81.0
MD02G1142800 Malus domestica HOM05D004674 ORTHO05D020551 2.7e-40 171.4 135 71.9
Ca_07052_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 2.3e-39 168.3 160 56.9
Ca_22377_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 2.1e-37 161.8 143 60.1
Dinv40102 Davidia involucrata HOM05D004674 ORTHO05D020551 4.9e-34 150.6 128 62.5
SEGI_19277 Sequoiadendron giganteum HOM05D004674 ORTHO05D020551 1.4e-33 149.1 299 34.8
MELO3C028475.2 Cucumis melo HOM05D004674 ORTHO05D029177 8.6e-31 139.8 93 74.2
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 1.9e-30 138.7 165 47.9
FAN23G1600 Fragaria x ananassa HOM05D004674 ORTHO05D045629 3.3e-30 137.9 171 50.9
arahy.Tifrunner.gnm1.ann1.TV0A1X Arachis hypogaea HOM05D004674 ORTHO05D007261 3.5e-24 117.9 100 59.0
MD02G1142900 Malus domestica HOM05D004674 ORTHO05D007261 7.3e-22 110.2 149 54.4
FAN14G4531 Fragaria x ananassa HOM05D004674 ORTHO05D020551 2.6e-19 101.7 74 74.3
Zm00001eb334700 Zea mays HOM05D004674 ORTHO05D007261 7.5e-19 100.1 71 70.4
Psat2g002040 Pisum sativum HOM05D004674 ORTHO05D327579 1.1e-17 96.3 182 41.2
GSVIVG01017515001 Vitis vinifera HOM05D004674 ORTHO05D020551 4.1e-17 94.4 57 75.4
HanXRQChr08g0221331 Helianthus annuus HOM05D004674 ORTHO05D021509 3.5e-16 91.3 53 84.9
GSVIVG01005333001 Vitis vinifera HOM05D004674 ORTHO05D020551 4.6e-16 90.9 57 71.9
SGA_v2.0_scaffold48G18033 Striga asiatica HOM05D004674 ORTHO05D051422 3.3e-14 84.7 125 38.4
Gohir.A06G159466 Gossypium hirsutum HOM05D004674 ORTHO05D029177 4.3e-14 84.3 52 78.8
Gorai.010G192800 Gossypium raimondii HOM05D004674 ORTHO05D029177 3.6e-13 81.3 52 76.9
Duzib248G0237 Durio zibethinus HOM05D004674 ORTHO05D020551 6.4e-10 70.5 43 76.7
FvH4_1g28681 Fragaria vesca HOM05D004674 ORTHO05D045629 2.4e-09 68.6 57 64.9
MELO3C028160.2 Cucumis melo HOM05D004674 ORTHO05D029175 2.1e-08 65.5 36 88.9
Sabra05G0098800 Salix brachista HOM05D004674 ORTHO05D349121 6.6e-07 60.5 54 66.7
MELO3C001880.2 Cucumis melo HOM05D004674 ORTHO05D029175 9.6e-06 56.6 29 93.1
MELO3C028263.2 Cucumis melo HOM05D004674 ORTHO05D029175 9.6e-06 56.6 29 93.1


User provided reference genes

Program Settings