Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G2230 Fragaria x ananassa HOM05D005328 ORTHO05D006049 1.1e-198 697.2 618 100.0
FvH4_4g13451 Fragaria vesca HOM05D005328 ORTHO05D006049 1.8e-167 593.6 619 87.1
FAN12G3626 Fragaria x ananassa HOM05D005328 ORTHO05D006049 1.8e-167 593.6 619 86.9
FAN07G1972 Fragaria x ananassa HOM05D005328 ORTHO05D006049 3.3e-166 589.3 619 84.0
FAN17G2578 Fragaria x ananassa HOM05D005328 ORTHO05D006049 1.8e-164 583.6 619 81.1
RcHm_v2.0_Chr4g0414011 Rosa chinensis HOM05D005328 ORTHO05D006049 1.4e-111 407.9 622 63.8
MD04G1014200 Malus domestica HOM05D005328 ORTHO05D006049 6.2e-88 329.3 628 61.6
Prupe.1G161200 Prunus persica HOM05D005328 ORTHO05D006049 9.9e-86 322.0 629 65.5
Dinv04372 Davidia involucrata HOM05D005328 ORTHO05D006049 2.7e-75 287.3 627 38.8
CSS0022453 Camellia sinensis var. sinensis HOM05D005328 ORTHO05D006049 1.5e-73 281.6 624 40.4
Eucgr.E04239 Eucalyptus grandis HOM05D005328 ORTHO05D006049 1.5e-73 281.6 621 39.6
Rhsim13G0137800 Rhododendron simsii HOM05D005328 ORTHO05D006049 4.3e-73 280.0 625 37.8
Lj6g0010372 Lotus japonicus HOM05D005328 ORTHO05D006049 9.6e-73 278.9 624 40.2
Cpa.g.sc53.124 Carica papaya HOM05D005328 ORTHO05D006049 1.6e-72 278.1 624 42.3
Manes.03G095600 Manihot esculenta HOM05D005328 ORTHO05D006049 6.2e-72 276.2 626 38.5
Hma1.2p1_0391F.1_g142830 Hydrangea macrophylla HOM05D005328 ORTHO05D006049 8.2e-72 275.8 626 38.3
Hund04726 Selenicereus undatus HOM05D005328 ORTHO05D006049 8.2e-72 275.8 635 43.5
Atru.chr1.2204 Acer truncatum HOM05D005328 ORTHO05D006049 1.4e-71 275.0 635 39.1
Actinidia02271 Actinidia chinensis HOM05D005328 ORTHO05D006049 1.5e-70 271.6 630 37.5
VMungo0540G0318 Vigna mungo HOM05D005328 ORTHO05D006049 3.4e-70 270.4 625 41.3
PGR042G0801 Punica granatum HOM05D005328 ORTHO05D006049 1.0e-69 268.9 624 40.9
Thecc.04G160200 Theobroma cacao HOM05D005328 ORTHO05D006049 1.7e-69 268.1 636 39.3
Medtr2g028200 Medicago truncatula HOM05D005328 ORTHO05D006049 1.4e-68 265.0 620 52.6
CAN.G2049.4 Capsicum annuum HOM05D005328 ORTHO05D006049 3.2e-68 263.8 625 39.2
Glyma.15G123900 Glycine max HOM05D005328 ORTHO05D006049 4.2e-68 263.5 623 42.4
TAR626G1462 Trochodendron aralioides HOM05D005328 ORTHO05D006049 2.1e-67 261.2 624 47.0
Cc09_g00040 Coffea canephora HOM05D005328 ORTHO05D006049 1.3e-66 258.5 637 44.0
Nitab4.5_0005721g0030 Nicotiana tabacum HOM05D005328 ORTHO05D006049 1.3e-66 258.5 622 37.9
Sc13g0008540 Simmondsia chinensis HOM05D005328 ORTHO05D006049 3.0e-66 257.3 622 38.3
Gohir.A02G007200 Gossypium hirsutum HOM05D005328 ORTHO05D006049 3.9e-66 256.9 626 39.0
Potri.006G000200 Populus trichocarpa HOM05D005328 ORTHO05D006049 3.9e-66 256.9 630 43.0
COL.COLO4_12851 Corchorus olitorius HOM05D005328 ORTHO05D006049 6.7e-66 256.1 637 40.0
Ca_00786_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 8.7e-66 255.8 619 43.8
Ca_11373_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 8.7e-66 255.8 619 43.8
Lalb_Chr15g0088491 Lupinus albus HOM05D005328 ORTHO05D006049 8.7e-66 255.8 626 39.3
GSVIVG01018754001 Vitis vinifera HOM05D005328 ORTHO05D006049 1.1e-65 255.4 624 55.0
Duzib151G0457 Durio zibethinus HOM05D005328 ORTHO05D006049 3.3e-65 253.8 630 37.8
Phvul.006G134100 Phaseolus vulgaris HOM05D005328 ORTHO05D006049 5.7e-65 253.1 649 36.8
vmacro03583 Vaccinium macrocarpon HOM05D005328 ORTHO05D006049 5.7e-65 253.1 594 36.9
TWI63G1825 Tripterygium wilfordii HOM05D005328 ORTHO05D006049 1.3e-64 251.9 635 40.8
Aa31LG1G25860 Aethionema arabicum HOM05D005328 ORTHO05D006049 2.2e-64 251.1 632 37.2
Ciclev10015350m.g Citrus clementina HOM05D005328 ORTHO05D006049 2.8e-64 250.8 623 37.2
Sopen02g029040 Solanum pennellii HOM05D005328 ORTHO05D006049 3.7e-64 250.4 623 39.3
Gohir.D02G007001 Gossypium hirsutum HOM05D005328 ORTHO05D006049 4.8e-64 250.0 630 38.3
Aqoxy6G01137 Aquilegia oxysepala HOM05D005328 ORTHO05D006049 1.1e-63 248.8 636 42.6
BcaB02g08879 Brassica carinata HOM05D005328 ORTHO05D006049 1.1e-63 248.8 623 43.5
Gorai.005G008200 Gossypium raimondii HOM05D005328 ORTHO05D006049 3.1e-63 247.3 625 39.0
Solyc02g084340.3 Solanum lycopersicum HOM05D005328 ORTHO05D006049 5.3e-63 246.5 638 43.1
CiPaw.10G085200 Carya illinoinensis HOM05D005328 ORTHO05D006049 1.5e-62 245.0 626 45.4
C03p29470 Brassica napus HOM05D005328 ORTHO05D006049 2.6e-62 244.2 622 41.8
BraA05t19414Z Brassica rapa HOM05D005328 ORTHO05D006049 3.4e-62 243.8 637 43.2
BcaC01g05181 Brassica carinata HOM05D005328 ORTHO05D006049 5.9e-62 243.0 622 41.6
A05p04290 Brassica napus HOM05D005328 ORTHO05D006049 5.9e-62 243.0 623 43.2
Oeu016925.1 Olea europaea HOM05D005328 ORTHO05D006049 1.0e-61 242.3 634 40.4
Ah.07g207330 Amaranthus hybridus HOM05D005328 ORTHO05D002024 1.7e-61 241.5 684 45.0
BcaC02g12330 Brassica carinata HOM05D005328 ORTHO05D006049 1.7e-61 241.5 623 40.3
THA.LOC104804861 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 1.7e-61 241.5 630 42.5
THA.LOC104807080 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 1.7e-61 241.5 630 42.5
BraA03t11679Z Brassica rapa HOM05D005328 ORTHO05D006049 2.2e-61 241.1 623 42.4
A03p24730 Brassica napus HOM05D005328 ORTHO05D006049 3.8e-61 240.4 623 42.2
SGA_v2.0_scaffold7G03648 Striga asiatica HOM05D005328 ORTHO05D006049 3.8e-61 240.4 619 36.5
ECA234G3238 Erigeron canadensis HOM05D005328 ORTHO05D006049 1.1e-60 238.8 618 36.2
C04p05070 Brassica napus HOM05D005328 ORTHO05D006049 1.9e-60 238.0 623 43.0
Psat1g170800 Pisum sativum HOM05D005328 ORTHO05D006049 3.2e-60 237.3 619 51.7
unitig_748.g7855 Utricularia gibba HOM05D005328 ORTHO05D006049 3.2e-60 237.3 634 36.8
CARHR139360 Cardamine hirsuta HOM05D005328 ORTHO05D006049 7.2e-60 236.1 622 49.7
TPR.G10498 Trifolium pratense HOM05D005328 ORTHO05D006049 7.2e-60 236.1 630 36.0
Sp4g26280 Schrenkiella parvula HOM05D005328 ORTHO05D006049 1.6e-59 235.0 623 46.4
SEGI_06923 Sequoiadendron giganteum HOM05D005328 ORTHO05D006049 4.6e-59 233.4 625 51.8
arahy.Tifrunner.gnm1.ann1.B05UD4 Arachis hypogaea HOM05D005328 ORTHO05D006049 1.4e-58 231.9 620 41.9
MELO3C017635.2 Cucumis melo HOM05D005328 ORTHO05D006049 1.8e-58 231.5 173 75.1
Migut.M01485 Erythranthe guttata HOM05D005328 ORTHO05D006049 1.8e-58 231.5 624 37.3
HanXRQChr17g0558521 Helianthus annuus HOM05D005328 ORTHO05D006049 2.3e-58 231.1 626 41.2
PGSC0003DMG400003630 Solanum tuberosum HOM05D005328 ORTHO05D006049 2.3e-58 231.1 638 59.1
CDE03G0050 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 3.9e-58 230.3 618 40.6
arahy.Tifrunner.gnm1.ann1.QMQM64 Arachis hypogaea HOM05D005328 ORTHO05D006049 5.1e-58 229.9 620 43.7
Lsat_1_v5_gn_4_65161 Lactuca sativa HOM05D005328 ORTHO05D006049 6.7e-58 229.6 624 34.9
AUR62021212 Chenopodium quinoa HOM05D005328 ORTHO05D006049 8.8e-58 229.2 618 40.5
CsaV3_4G004310 Cucumis sativus L. HOM05D005328 ORTHO05D006049 1.5e-57 228.4 173 74.0
Nitab4.5_0002880g0010 Nicotiana tabacum HOM05D005328 ORTHO05D006049 2.0e-57 228.0 623 37.4
HPP92_007484 Vanilla planifolia HOM05D005328 ORTHO05D006049 2.5e-57 227.6 618 36.2
QL05p066147 Quercus lobata HOM05D005328 ORTHO05D006049 4.3e-57 226.9 628 40.3
Thhalv10001457m.g Eutrema salsugineum HOM05D005328 ORTHO05D006049 9.7e-57 225.7 622 42.3
Glyma.09G018000 Glycine max HOM05D005328 ORTHO05D006049 1.3e-56 225.3 623 54.1
Peaxi162Scf00083g00091 Petunia axillaris HOM05D005328 ORTHO05D006049 1.7e-56 224.9 629 40.9
AL4G43160 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 2.2e-56 224.6 621 43.5
ClCG07G017100 Citrullus lanatus HOM05D005328 ORTHO05D006049 2.2e-56 224.6 170 74.1
Sabra06G0000700 Salix brachista HOM05D005328 ORTHO05D006049 2.8e-56 224.2 629 39.4
AT2G44200 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 6.3e-56 223.0 621 44.0
Sed0006700 Sechium edule HOM05D005328 ORTHO05D006049 2.4e-55 221.1 623 43.5
DCAR_022839 Daucus carota HOM05D005328 ORTHO05D006049 2.0e-54 218.0 174 71.8
EL10Ac3g05669 Beta vulgaris HOM05D005328 ORTHO05D006049 2.9e-53 214.2 631 45.8
THA.LOC104798630 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 8.5e-53 212.6 227 59.5
PSO170G6444 Papaver somniferum HOM05D005328 ORTHO05D006049 7.2e-52 209.5 630 52.4
PSO017G7149 Papaver somniferum HOM05D005328 ORTHO05D006049 1.2e-51 208.8 620 43.1
BcaB01g03324 Brassica carinata HOM05D005328 ORTHO05D006049 2.7e-51 207.6 621 38.6
SalBow8G1780 Salvia bowleyana HOM05D005328 ORTHO05D006049 3.6e-51 207.2 623 42.7
Carub.0004s2678 Capsella rubella HOM05D005328 ORTHO05D006049 3.9e-50 203.8 621 50.1
Pp3c3_9980 Physcomitrium patens HOM05D005328 ORTHO05D006049 3.3e-49 200.7 171 65.5
BolC3t15295H Brassica oleracea HOM05D005328 ORTHO05D006049 5.7e-49 199.9 652 38.2
AagrBONN_evm.TU.Sc2ySwM_228.5016 Anthoceros agrestis HOM05D005328 ORTHO05D006049 3.1e-47 194.1 225 56.4
Os08g0500200 Oryza sativa ssp. japonica HOM05D005328 ORTHO05D006049 3.8e-45 187.2 634 43.1
SMO143G0138 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.1e-41 175.6 168 59.5
Prupe.1G162300 Prunus persica HOM05D005328 ORTHO05D006049 5.7e-41 173.3 218 53.7
Prupe.1G161500 Prunus persica HOM05D005328 ORTHO05D006049 5.3e-39 166.8 130 70.0
Mapoly0104s0032 Marchantia polymorpha HOM05D005328 ORTHO05D006049 2.5e-36 157.9 197 53.3
CBR_g2953 Chara braunii HOM05D005328 ORTHO05D006049 5.2e-34 150.2 175 53.7
Carub.0004s2677 Capsella rubella HOM05D005328 ORTHO05D006049 1.3e-32 145.6 161 52.2
AUR62016005 Chenopodium quinoa HOM05D005328 ORTHO05D006049 1.6e-30 138.7 81 84.0
ATR0751G077 Amborella trichopoda HOM05D005328 ORTHO05D006049 2.0e-30 138.3 123 66.7
CDE06G1717 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 1.3e-29 135.6 98 76.5
QL05p065813 Quercus lobata HOM05D005328 ORTHO05D006049 2.9e-29 134.4 80 86.2
AT2G44195 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 6.5e-29 133.3 148 53.4
DCAR_022842 Daucus carota HOM05D005328 ORTHO05D006049 1.1e-28 132.5 109 70.6
AUR62016004 Chenopodium quinoa HOM05D005328 ORTHO05D006049 2.6e-25 121.3 509 37.1
Zm00001eb034090 Zea mays HOM05D005328 ORTHO05D006049 4.4e-25 120.6 664 33.3
Nn1g08402 Nelumbo nucifera HOM05D005328 ORTHO05D006049 2.8e-24 117.9 629 28.8
CDE06G0152 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 1.1e-23 115.9 103 64.1
SMO114G0026 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.0e-21 109.4 177 41.2
Cre01.g021400 Chlamydomonas reinhardtii HOM05D005328 ORTHO05D006049 5.0e-21 107.1 176 40.3
Zm00001eb097520 Zea mays HOM05D005328 ORTHO05D006049 3.6e-19 100.9 103 57.3
Haze_07067 Corylus avellana HOM05D005328 ORTHO05D006049 8.9e-18 96.3 104 60.6
ATR0751G111 Amborella trichopoda HOM05D005328 ORTHO05D006049 2.6e-17 94.7 131 54.2
SMO246G0007 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 2.6e-17 94.7 63 76.2
PRCOL_00001794 Prasinoderma coloniale HOM05D005328 ORTHO05D006049 4.4e-17 94.0 178 38.8
SMO117G0350 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 4.1e-15 87.4 138 44.9
TAR371G0561 Trochodendron aralioides HOM05D005328 ORTHO05D006049 4.1e-15 87.4 58 81.0
AL4G43150 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 5.4e-15 87.0 154 42.2
VMungo1383G0559 Vigna mungo HOM05D005328 ORTHO05D006049 2.0e-14 85.1 53 77.4
SMO117G0022 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 3.5e-14 84.3 110 49.1
Sabra16G0007800 Salix brachista HOM05D000040 ORTHO05D001305 1.9e-12 78.6 68 61.8
SMO117G0182 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 5.6e-12 77.0 93 51.6
BcaB02g08878 Brassica carinata HOM05D005328 ORTHO05D006049 2.1e-11 75.1 66 66.7
SMO117G0245 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.0e-10 72.8 87 49.4
MCO07G343 Micromonas commoda HOM05D005328 ORTHO05D006049 5.2e-10 70.5 153 33.3
Cfa024420 Carpinus fangiana HOM05D005328 ORTHO05D006049 1.7e-08 65.5 168 29.2
Actinidia26768 Actinidia chinensis HOM05D005328 ORTHO05D006049 4.1e-07 60.8 69 56.5
CiPaw.09G114000 Carya illinoinensis HOM05D005328 ORTHO05D006049 5.4e-07 60.5 55 61.8
CiPaw.09G114200 Carya illinoinensis HOM05D005328 ORTHO05D006049 5.4e-07 60.5 55 61.8


User provided reference genes

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