Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 0.0e+00 2021.9 1045 100.0
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 0.0e+00 1942.9 1046 96.5
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 0.0e+00 1923.7 1049 95.9
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 0.0e+00 1857.4 1062 91.8
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 0.0e+00 1553.1 1050 79.8
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 0.0e+00 1134.8 1062 60.3
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 5.6e-307 1057.7 1062 57.3
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 1.6e-253 880.2 1061 50.9
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 1.1e-225 787.7 1096 45.2
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 1.7e-218 763.8 1140 43.7
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 4.1e-217 759.2 1118 43.3
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 8.9e-196 688.3 1121 40.7
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 9.9e-195 684.9 1078 42.9
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 3.7e-194 682.9 1097 42.2
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 9.2e-193 678.3 1128 40.8
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 1.6e-192 677.6 1104 40.7
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 7.3e-190 668.7 1130 39.9
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 1.6e-184 651.0 1135 39.2
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 3.0e-183 646.7 1113 39.4
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 1.2e-179 634.8 1163 37.6
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 4.9e-178 629.4 1103 39.4
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 1.7e-175 620.9 1105 39.5
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 4.8e-173 612.8 1128 37.4
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 4.0e-172 609.8 1168 36.0
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 6.4e-170 602.4 1111 38.1
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 1.5e-166 591.3 1109 37.9
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 3.7e-165 586.6 1093 38.1
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 1.8e-164 584.3 1105 37.7
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 1.2e-163 581.6 1130 36.9
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 3.5e-160 570.1 1095 36.2
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 3.7e-157 560.1 1099 35.9
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 2.4e-156 557.4 1097 35.7
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 4.2e-153 546.6 1113 35.4
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 8.5e-146 522.3 1093 36.7
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 3.2e-145 520.4 1075 35.3
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 1.2e-144 518.5 1097 34.3
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 3.0e-143 513.8 1103 34.9
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 5.7e-142 509.6 1053 36.2
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 5.9e-139 499.6 1124 34.0
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 9.7e-134 482.3 1048 34.4
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 3.1e-132 477.2 1091 33.8
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 5.3e-124 449.9 1075 32.8
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 2.0e-123 448.0 1088 33.5
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 2.2e-122 444.5 1125 32.4
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 3.8e-122 443.7 1085 32.7
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 1.5e-121 441.8 1106 33.5
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 1.5e-121 441.8 1200 31.2
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 2.5e-121 441.0 1079 33.5
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 4.2e-121 440.3 1109 33.5
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 7.2e-121 439.5 1186 31.7
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 1.2e-120 438.7 1082 33.8
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 2.1e-120 438.0 1081 33.7
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 3.6e-120 437.2 1084 33.2
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 1.0e-119 435.6 1081 32.7
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 3.0e-119 434.1 1080 32.5
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 4.4e-118 430.3 1094 33.1
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 6.3e-117 426.4 1087 32.0
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 9.1e-116 422.5 1103 32.5
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 1.2e-115 422.2 1081 31.2
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 1.6e-115 421.8 1078 32.5
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 1.7e-114 418.3 883 35.8
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 1.5e-113 415.2 1072 31.5
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 7.5e-110 402.9 1074 30.8
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 9.8e-110 402.5 1132 30.8
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 3.1e-108 397.5 1191 29.9
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 1.0e-106 392.5 1122 30.4
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 4.7e-104 383.6 1188 30.5
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 4.7e-104 383.6 1085 31.1
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 6.8e-103 379.8 527 45.0
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 2.6e-102 377.9 851 35.1
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 2.2e-101 374.8 1115 30.5
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 8.6e-98 362.8 1076 30.1
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 1.9e-97 361.7 1078 31.4
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 1.5e-94 352.1 1053 29.8
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 4.4e-94 350.5 1081 30.8
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 5.8e-94 350.1 1102 30.1
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 9.2e-92 342.8 1079 30.4
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 3.0e-90 337.8 1075 29.0
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 9.5e-89 332.8 882 32.4
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 3.1e-87 327.8 896 30.7
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 9.8e-86 322.8 685 38.1
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 6.4e-85 320.1 1042 29.4
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 5.4e-84 317.0 769 32.6
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 1.6e-83 315.5 750 33.5
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 3.0e-82 311.2 421 45.6
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 1.1e-76 292.7 873 29.4
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 2.7e-75 288.1 732 32.7
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 2.7e-75 288.1 736 31.9
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 1.0e-74 286.2 853 30.0
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 1.7e-74 285.4 732 32.5
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 1.7e-74 285.4 732 32.5
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 1.6e-72 278.9 690 31.2
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 2.9e-69 268.1 799 32.0
RcHm_v2.0_Chr7g0198831 Rosa chinensis HOM05D005259 ORTHO05D006402 2.0e-62 245.4 157 76.4
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 6.4e-61 240.4 722 30.1
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 7.9e-59 233.4 939 26.5
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 6.2e-56 223.8 1123 24.1
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 3.4e-54 218.0 749 29.6
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 2.2e-53 215.3 787 28.8
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 2.9e-53 214.9 326 40.8
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 2.7e-51 208.4 536 32.1
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 8.7e-50 203.4 517 30.8
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 2.5e-49 201.8 761 28.8
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 2.8e-48 198.4 202 53.0
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 1.5e-46 192.6 432 32.6
Phvul.007G125900 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 1.0e-45 189.9 781 28.6
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.7e-45 189.1 385 36.1
Lj5g0013708 Lotus japonicus HOM05D005259 ORTHO05D006402 1.9e-44 185.7 790 27.8
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 9.3e-44 183.3 495 31.1
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 1.6e-43 182.6 659 29.1
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.3e-42 179.5 297 38.0
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 2.8e-40 171.8 299 33.8
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 2.4e-39 168.7 1016 23.8
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 6.9e-39 167.2 684 27.0
Ca_09836_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 2.0e-38 165.6 780 25.3
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 1.3e-34 152.9 1043 24.3
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 1.1e-33 149.8 424 29.5
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 1.3e-32 146.4 165 46.7
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 1.4e-31 142.9 211 40.3
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.2e-30 139.8 168 48.2
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 2.0e-30 139.0 164 45.7
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 2.0e-30 139.0 132 51.5
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 2.6e-30 138.7 155 47.7
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 2.6e-30 138.7 156 46.2
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 2.5e-28 132.1 174 42.5
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 3.2e-28 131.7 137 48.2
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 2.1e-27 129.0 673 23.5
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 1.5e-25 122.9 113 55.8
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 1.1e-23 116.7 302 28.5
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 1.2e-22 113.2 127 46.5
Medtr1g075280 Medicago truncatula HOM05D005259 ORTHO05D006402 2.6e-22 112.1 611 24.1
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 2.6e-22 112.1 323 27.9
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 1.7e-21 109.4 304 28.0
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 7.2e-20 104.0 696 23.0
arahy.Tifrunner.gnm1.ann1.7CP98C Arachis hypogaea HOM05D005259 ORTHO05D006402 3.0e-18 98.6 317 28.4
TPR.G17184 Trifolium pratense HOM05D005259 ORTHO05D006402 2.0e-17 95.9 65 66.2
arahy.Tifrunner.gnm1.ann1.TEF2FC Arachis hypogaea HOM05D005259 ORTHO05D006402 1.8e-15 89.4 784 22.2
TPR.G27199 Trifolium pratense HOM05D005259 ORTHO05D006402 5.3e-15 87.8 468 26.9
arahy.Tifrunner.gnm1.ann1.YIX0R7 Arachis hypogaea HOM05D005259 ORTHO05D006402 7.7e-14 84.0 781 22.3
MBI04_g45851_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 1.5e-12 79.7 451 25.5
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 1.6e-11 76.3 80 47.5
Lj6A656T72 Lonicera japonica HOM05D005259 ORTHO05D006402 2.1e-11 75.9 162 39.5
THA.LOC104815984 Tarenaya hassleriana HOM05D005259 ORTHO05D006402 1.1e-09 70.1 300 25.7
Psat4g092760 Pisum sativum HOM05D005259 ORTHO05D006402 4.1e-07 61.6 446 24.0


User provided reference genes

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