Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G1648 Fragaria x ananassa HOM05D003777 ORTHO05D004690 0.0e+00 1157.9 662 100.0
FvH4_4g24580 Fragaria vesca HOM05D003777 ORTHO05D004690 0.0e+00 1127.1 662 97.7
FAN12G3799 Fragaria x ananassa HOM05D003777 ORTHO05D004690 0.0e+00 1124.8 662 97.6
FAN07G0030 Fragaria x ananassa HOM05D003777 ORTHO05D004690 0.0e+00 1123.6 662 97.6
FAN17G2971 Fragaria x ananassa HOM05D003777 ORTHO05D004690 0.0e+00 1102.8 646 97.8
RcHm_v2.0_Chr4g0431561 Rosa chinensis HOM05D003777 ORTHO05D004690 0.0e+00 1075.8 662 93.2
RcHm_v2.0_Chr4g0431581 Rosa chinensis HOM05D003777 ORTHO05D004690 0.0e+00 1075.1 662 93.1
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 8.3e-256 887.1 672 77.4
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 4.4e-249 864.8 672 76.0
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 1.9e-231 806.2 650 69.8
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 7.8e-230 800.8 619 71.6
Phvul.002G176900 Phaseolus vulgaris HOM05D003777 ORTHO05D004690 3.9e-229 798.5 668 69.3
arahy.Tifrunner.gnm1.ann1.9WV3XJ Arachis hypogaea HOM05D003777 ORTHO05D004690 5.2e-226 788.1 666 69.2
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 6.8e-226 787.7 630 71.6
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 1.2e-225 786.9 675 69.9
Prupe.1G234800 Prunus persica HOM05D003777 ORTHO05D004690 3.8e-224 781.9 574 77.0
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 3.8e-224 781.9 667 68.2
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 1.1e-223 780.4 632 68.7
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 3.5e-222 775.4 671 67.1
arahy.Tifrunner.gnm1.ann1.238UV6 Arachis hypogaea HOM05D003777 ORTHO05D004690 7.8e-222 774.2 669 68.5
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 1.3e-221 773.5 675 65.0
Lj4g0007172 Lotus japonicus HOM05D003777 ORTHO05D004690 1.7e-221 773.1 667 66.1
VMungo0251G0828 Vigna mungo HOM05D003777 ORTHO05D004690 5.1e-221 771.5 710 67.2
Glyma.05G144700 Glycine max HOM05D003777 ORTHO05D004690 6.6e-221 771.2 632 67.1
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 8.7e-221 770.8 675 67.4
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 1.9e-220 769.6 632 69.9
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 2.5e-220 769.2 635 66.1
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 5.6e-220 768.1 669 69.4
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 2.1e-219 766.1 672 64.3
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 2.8e-219 765.8 654 69.6
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 4.7e-219 765.0 667 64.9
Atru.chr11.2223 Acer truncatum HOM05D003777 ORTHO05D004690 6.2e-219 764.6 673 68.2
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 1.1e-218 763.8 674 68.4
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 1.4e-218 763.5 677 67.7
arahy.Tifrunner.gnm1.ann1.SED4J7 Arachis hypogaea HOM05D003777 ORTHO05D004690 3.1e-218 762.3 705 63.0
ClCG05G026250 Citrullus lanatus HOM05D003777 ORTHO05D004690 5.3e-218 761.5 674 67.2
Sabra06G0166800 Salix brachista HOM05D003777 ORTHO05D004690 2.0e-217 759.6 637 67.7
Nitab4.5_0000492g0120 Nicotiana tabacum HOM05D003777 ORTHO05D004690 3.4e-217 758.8 670 64.3
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 4.4e-217 758.4 674 66.6
Nitab4.5_0002026g0090 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.3e-216 756.9 670 64.3
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 2.9e-216 755.7 682 64.2
Lalb_Chr07g0187251 Lupinus albus HOM05D003777 ORTHO05D004690 3.2e-215 752.3 668 69.0
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 3.2e-215 752.3 639 65.6
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 9.3e-215 750.7 650 68.3
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 2.7e-214 749.2 639 65.4
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 3.5e-214 748.8 640 67.7
Medtr8g079990 Medicago truncatula HOM05D003777 ORTHO05D004690 4.6e-214 748.4 639 65.3
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 6.0e-214 748.0 675 65.8
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 7.8e-214 747.7 635 66.3
arahy.Tifrunner.gnm1.ann1.35MH8V Arachis hypogaea HOM05D003777 ORTHO05D004690 5.1e-213 745.0 683 63.0
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 6.6e-213 744.6 675 65.5
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 1.1e-212 743.8 672 65.6
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.5e-212 743.4 651 65.9
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 3.3e-212 742.3 670 66.4
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 4.3e-212 741.9 673 65.5
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 5.6e-212 741.5 662 65.6
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 1.3e-211 740.3 669 63.4
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 2.8e-211 739.2 660 63.6
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 8.1e-211 737.6 670 66.9
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 1.4e-210 736.9 668 63.3
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 2.4e-210 736.1 654 63.9
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 2.6e-209 732.6 660 63.5
Lsat_1_v5_gn_2_96961 Lactuca sativa HOM05D003777 ORTHO05D004690 5.8e-209 731.5 671 63.2
PSO170G4787 Papaver somniferum HOM05D003777 ORTHO05D004690 4.2e-207 725.3 676 62.4
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 9.3e-207 724.2 639 63.7
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 1.2e-206 723.8 667 63.3
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 2.1e-206 723.0 670 62.7
CAN.G487.1 Capsicum annuum HOM05D003777 ORTHO05D004690 6.0e-206 721.5 664 63.1
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 2.3e-205 719.5 667 63.1
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 5.1e-205 718.4 732 61.5
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 2.5e-204 716.1 659 62.4
MSTRG.12471 Avicennia marina HOM05D003777 ORTHO05D004690 3.3e-204 715.7 624 64.1
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 4.3e-204 715.3 669 65.2
Peaxi162Scf00029g02527 Petunia axillaris HOM05D003777 ORTHO05D004690 9.6e-204 714.1 669 62.6
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 1.6e-203 713.4 664 61.0
AT1G67680 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 2.1e-203 713.0 679 61.4
DCAR_021624 Daucus carota HOM05D003777 ORTHO05D004690 2.1e-203 713.0 657 61.3
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 2.1e-203 713.0 628 63.9
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 2.8e-203 712.6 682 63.5
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 1.4e-202 710.3 669 61.7
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 1.4e-202 710.3 669 61.7
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 1.4e-202 710.3 669 61.7
Aqoxy5G03557 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 4.0e-202 708.8 656 62.8
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 1.5e-201 706.8 672 61.5
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 2.0e-201 706.4 697 59.8
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 7.6e-201 704.5 669 61.4
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 6.4e-200 701.4 666 62.2
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 6.4e-200 701.4 682 62.5
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 1.9e-199 699.9 682 63.6
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 3.2e-199 699.1 643 61.7
DCAR_021625 Daucus carota HOM05D003777 ORTHO05D004690 3.0e-197 692.6 657 60.1
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 8.7e-197 691.0 638 62.1
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 3.3e-196 689.1 670 60.3
HanXRQChr04g0126141 Helianthus annuus HOM05D003777 ORTHO05D004690 1.4e-194 683.7 635 61.7
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 9.0e-194 681.0 636 64.9
TPR.G27143 Trifolium pratense HOM05D003777 ORTHO05D004690 4.5e-193 678.7 547 64.9
AT1G67650 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 8.4e-192 674.5 672 58.9
Migut.D00587 Erythranthe guttata HOM05D003777 ORTHO05D004690 1.9e-191 673.3 606 62.7
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 8.7e-189 664.5 686 62.2
Sed0021346 Sechium edule HOM05D003777 ORTHO05D004690 3.4e-185 652.5 556 70.3
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 1.0e-184 651.0 679 59.4
Nitab4.5_0002757g0020 Nicotiana tabacum HOM05D003777 ORTHO05D004690 2.1e-182 643.3 582 63.6
unitig_744.g24046 Utricularia gibba HOM05D003777 ORTHO05D004690 7.9e-182 641.3 685 56.1
BraA07t31048Z Brassica rapa HOM05D003777 ORTHO05D004690 1.1e-180 637.5 559 65.3
COL.COLO4_23602 Corchorus olitorius HOM05D003777 ORTHO05D004690 4.3e-180 635.6 669 56.4
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 2.2e-179 633.3 651 58.4
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 3.1e-178 629.4 673 57.1
CSS0018349 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 2.0e-177 626.7 504 66.9
Sc04g0009890 Simmondsia chinensis HOM05D003777 ORTHO05D004690 1.5e-172 610.5 509 70.1
Nitab4.5_0001925g0190 Nicotiana tabacum HOM05D003777 ORTHO05D004690 9.1e-170 601.3 634 57.1
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 1.2e-169 600.9 654 55.5
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 6.7e-165 585.1 666 55.0
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 2.9e-160 569.7 674 52.5
AL2G26340 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 3.2e-159 566.2 647 53.2
Carub.0002s1402 Capsella rubella HOM05D003777 ORTHO05D004690 7.2e-159 565.1 543 62.1
Lj2C633G4 Lonicera japonica HOM05D003777 ORTHO05D004690 4.7e-158 562.4 514 65.0
Lalb_Chr12g0206451 Lupinus albus HOM05D003777 ORTHO05D004690 2.6e-156 556.6 468 74.4
Lalb_Chr12g0206431 Lupinus albus HOM05D003777 ORTHO05D004690 2.0e-153 547.0 455 75.4
PGSC0003DMG400032494 Solanum tuberosum HOM05D003777 ORTHO05D004690 5.7e-148 528.9 484 59.5
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 1.3e-139 501.1 631 50.1
Zm00001eb145240 Zea mays HOM05D003777 ORTHO05D004690 7.3e-135 485.3 501 57.5
Mapoly0007s0138 Marchantia polymorpha HOM05D003777 ORTHO05D004690 8.3e-131 471.9 636 45.8
CSS0034811 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.3e-128 464.5 453 62.0
Pp3c19_7700 Physcomitrium patens HOM05D003777 ORTHO05D004690 6.8e-125 452.2 678 42.5
SHI17928 Sapria himalayana HOM05D003777 ORTHO05D004690 7.5e-124 448.7 672 47.0
C06p38540 Brassica napus HOM05D003777 ORTHO05D004690 1.3e-123 448.0 463 55.5
SEGI_14731 Sequoiadendron giganteum HOM05D003777 ORTHO05D004690 5.4e-122 442.6 556 49.8
Lalb_Chr12g0206401 Lupinus albus HOM05D003777 ORTHO05D004690 6.6e-120 435.6 342 74.6
CBR_g26341 Chara braunii HOM05D003777 ORTHO05D004690 3.9e-104 383.3 635 41.7
SMO356G0370 Selaginella moellendorffii HOM05D003777 ORTHO05D004690 7.3e-103 379.0 590 43.1
TAR622G1358 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.3e-102 378.3 339 68.1
BolC6t38947H Brassica oleracea HOM05D003777 ORTHO05D004690 2.1e-102 377.5 385 55.8
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 1.3e-94 351.7 418 49.5
AUR62017138 Chenopodium quinoa HOM05D003777 ORTHO05D004690 2.3e-88 330.9 352 62.5
ECA238G3243 Erigeron canadensis HOM05D003777 ORTHO05D004690 3.9e-64 250.4 225 60.4
MCO13G157 Micromonas commoda HOM05D003777 ORTHO05D004690 8.8e-64 249.2 647 33.7
Hma1.2p1_0075F.1_g039220 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 4.8e-62 243.4 247 57.5
Nn4g21997 Nelumbo nucifera HOM05D003777 ORTHO05D004690 8.5e-59 232.6 178 75.3
CSS0039153 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 2.1e-57 228.0 190 63.7
Oeu007469.1 Olea europaea HOM05D003777 ORTHO05D004690 1.5e-55 221.9 325 47.4
PGSC0003DMG400024128 Solanum tuberosum HOM05D003777 ORTHO05D004690 2.0e-55 221.5 188 64.4
BraA07t30871Z Brassica rapa HOM05D003777 ORTHO05D004690 1.8e-53 214.9 206 54.9
Cre03.g182500 Chlamydomonas reinhardtii HOM05D003777 ORTHO05D004690 2.5e-50 204.5 742 29.5
PGSC0003DMG400024126 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.8e-48 198.4 172 70.9
TAR622G0547 Trochodendron aralioides HOM05D003777 ORTHO05D004690 8.8e-48 196.1 168 60.1
Psat3g102200 Pisum sativum HOM05D003777 ORTHO05D004690 7.7e-44 183.0 155 60.6
Psat5g044680 Pisum sativum HOM05D003777 ORTHO05D004690 2.2e-43 181.4 155 60.6
PRCOL_00006597 Prasinoderma coloniale HOM05D003777 ORTHO05D004690 1.9e-42 178.3 640 30.5
PGSC0003DMG400017991 Solanum tuberosum HOM05D003777 ORTHO05D004690 5.5e-42 176.8 151 63.6
Solyc10g044443.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 7.5e-39 166.4 176 51.7
Aqoxy6G02120 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 8.3e-38 162.9 136 68.4
Sopen01g018830 Solanum pennellii HOM05D003777 ORTHO05D004690 3.1e-37 161.0 176 50.0
Aqoxy6G02118 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 2.7e-36 157.9 128 66.4
Haze_17766 Corylus avellana HOM05D001576 ORTHO05D000401 1.0e-35 156.0 117 70.9
Sopen01g018820 Solanum pennellii HOM05D003777 ORTHO05D004690 3.5e-28 131.0 150 50.7
Psat3g103880 Pisum sativum HOM05D003777 ORTHO05D004690 7.7e-28 129.8 188 40.4
CAN.G1295.1 Capsicum annuum HOM05D003777 ORTHO05D004690 1.3e-27 129.0 148 50.7
Lalb_Chr12g0206411 Lupinus albus HOM05D003777 ORTHO05D004690 1.7e-22 112.1 92 65.2
Lalb_Chr12g0206441 Lupinus albus HOM05D003777 ORTHO05D004690 1.7e-22 112.1 92 65.2
Lalb_Chr12g0206461 Lupinus albus HOM05D003777 ORTHO05D004690 1.7e-22 112.1 92 65.2
Lalb_Chr12g0206421 Lupinus albus HOM05D003777 ORTHO05D004690 2.9e-22 111.3 107 55.1
Aqoxy6G02119 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 2.0e-20 105.1 101 58.4
CAN.G1310.4 Capsicum annuum HOM05D003777 ORTHO05D004690 5.9e-20 103.6 92 59.8
MBI11_g11081_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 1.6e-17 95.5 94 53.2
MBI11_g45427_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 1.6e-17 95.5 94 53.2
TAR622G0255 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.6e-17 95.5 91 58.2
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 2.3e-16 91.7 94 47.9
C06p38550 Brassica napus HOM05D003777 ORTHO05D004690 3.4e-15 87.8 110 63.6
BcaC03g14865 Brassica carinata HOM05D003777 ORTHO05D004690 1.3e-14 85.9 79 67.1
Psat4g130680 Pisum sativum HOM05D003777 ORTHO05D037365 1.1e-13 82.8 93 43.0
BcaC03g14858 Brassica carinata HOM05D003777 ORTHO05D004690 1.4e-13 82.4 76 64.5
Solyc01g047580.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 5.4e-13 80.5 121 47.9
SEGI_18986 Sequoiadendron giganteum HOM05D003777 ORTHO05D000001 1.3e-11 75.9 82 46.3
SHI17930 Sapria himalayana HOM05D003777 ORTHO05D012379 3.9e-11 74.3 92 42.4
PGSC0003DMG400024133 Solanum tuberosum HOM05D003777 ORTHO05D004690 9.5e-10 69.7 73 56.2
Nitab4.5_0004629g0100 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.1e-08 66.2 49 59.2
Actinidia09282 Actinidia chinensis HOM05D003777 ORTHO05D004690 3.7e-06 57.8 160 35.6
TAR625G1055 Trochodendron aralioides HOM05D003777 ORTHO05D012379 4.9e-06 57.4 62 46.8
CAN.G151.20 Capsicum annuum HOM05D000329 ORTHO05D000833 8.3e-06 56.6 48 58.3


User provided reference genes

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