Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G1421 Fragaria x ananassa HOM05D003438 ORTHO05D012326 1.7e-134 482.6 233 100.0
FvH4_4g28800 Fragaria vesca HOM05D003438 ORTHO05D004235 4.7e-89 331.6 176 95.5
FAN17G0827 Fragaria x ananassa HOM05D003438 ORTHO05D004235 2.0e-87 326.2 189 89.4
FAN12G2600 Fragaria x ananassa HOM05D003438 ORTHO05D004235 7.5e-87 324.3 189 88.9
FAN07G2974 Fragaria x ananassa HOM05D003438 ORTHO05D004235 6.4e-86 321.2 189 88.4
RcHm_v2.0_Chr4g0436941 Rosa chinensis HOM05D003438 ORTHO05D004235 4.4e-79 298.5 176 86.4
Prupe.1G298000 Prunus persica HOM05D003438 ORTHO05D004235 4.2e-69 265.4 177 76.8
MD16G1052600 Malus domestica HOM05D003438 ORTHO05D004235 6.0e-68 261.5 173 77.5
QL03p047145 Quercus lobata HOM05D003438 ORTHO05D004235 6.2e-57 224.9 197 59.9
CANSAT64G0670 Cannabis sativa HOM05D003438 ORTHO05D004235 1.8e-56 223.4 172 65.7
Haze_11830 Corylus avellana HOM05D003438 ORTHO05D004235 6.9e-56 221.5 173 65.3
Cfa008813 Carpinus fangiana HOM05D003438 ORTHO05D004235 3.4e-55 219.2 173 65.9
CiPaw.05G119100 Carya illinoinensis HOM05D003438 ORTHO05D004235 4.5e-55 218.8 180 63.3
CSS0002113 Camellia sinensis var. sinensis HOM05D003438 ORTHO05D004235 2.7e-52 209.5 172 65.1
Hma1.2p1_0762F.1_g214440 Hydrangea macrophylla HOM05D003438 ORTHO05D004235 2.7e-52 209.5 170 62.9
Hma1.2p1_0762F.1_g214450 Hydrangea macrophylla HOM05D003438 ORTHO05D004235 2.7e-52 209.5 170 62.9
Dinv16582 Davidia involucrata HOM05D003438 ORTHO05D004235 4.6e-52 208.8 172 64.5
Thecc.02G318900 Theobroma cacao HOM05D003438 ORTHO05D004235 4.6e-52 208.8 174 63.8
Ciclev10030492m.g Citrus clementina HOM05D003438 ORTHO05D004235 1.0e-51 207.6 172 63.4
Duzib251G0072 Durio zibethinus HOM05D003438 ORTHO05D004235 1.0e-51 207.6 172 64.0
GSVIVG01010139001 Vitis vinifera HOM05D003438 ORTHO05D004235 5.1e-51 205.3 173 64.2
TAR629G1044 Trochodendron aralioides HOM05D003438 ORTHO05D004235 6.7e-51 204.9 182 60.4
Sc04g0007220 Simmondsia chinensis HOM05D003438 ORTHO05D004235 1.1e-50 204.1 172 60.5
Sabra10G0104100 Salix brachista HOM05D003438 ORTHO05D004235 3.3e-50 202.6 170 61.2
TWI75G0189 Tripterygium wilfordii HOM05D003438 ORTHO05D004235 3.3e-50 202.6 172 63.4
Glyma.15G276800 Glycine max HOM05D003438 ORTHO05D004235 4.3e-50 202.2 176 60.2
Lj3C1025G4 Lonicera japonica HOM05D003438 ORTHO05D004235 4.3e-50 202.2 172 61.6
arahy.Tifrunner.gnm1.ann1.KJ79M0 Arachis hypogaea HOM05D003438 ORTHO05D004235 7.4e-50 201.4 170 60.0
arahy.Tifrunner.gnm1.ann1.2XHE7W Arachis hypogaea HOM05D003438 ORTHO05D004235 9.6e-50 201.1 170 60.0
Gohir.A03G107400 Gossypium hirsutum HOM05D003438 ORTHO05D004235 9.6e-50 201.1 172 62.2
Atru.chr11.1518 Acer truncatum HOM05D003438 ORTHO05D004235 1.3e-49 200.7 172 62.2
Potri.010G135500 Populus trichocarpa HOM05D003438 ORTHO05D004235 1.6e-49 200.3 170 60.0
Gorai.005G148400 Gossypium raimondii HOM05D003438 ORTHO05D004235 4.8e-49 198.7 172 61.6
Lj4g0011234 Lotus japonicus HOM05D003438 ORTHO05D004235 8.2e-49 198.0 184 59.8
Sed0018972 Sechium edule HOM05D003438 ORTHO05D004235 1.4e-48 197.2 182 59.3
Gohir.D02G132466 Gossypium hirsutum HOM05D003438 ORTHO05D004235 4.0e-48 195.7 172 60.5
Aqoxy3G00578 Aquilegia oxysepala HOM05D005717 ORTHO05D004235 9.0e-48 194.5 179 55.3
Psat4g113520 Pisum sativum HOM05D003438 ORTHO05D004235 2.0e-47 193.4 171 62.0
Cc11_g11300 Coffea canephora HOM05D003438 ORTHO05D004235 2.6e-47 193.0 170 59.4
Medtr8g069840 Medicago truncatula HOM05D003438 ORTHO05D004235 2.6e-47 193.0 171 61.4
vmacro10455 Vaccinium macrocarpon HOM05D003438 ORTHO05D004235 2.6e-47 193.0 171 60.2
SalBow8G3833 Salvia bowleyana HOM05D003438 ORTHO05D004235 4.5e-47 192.2 170 61.2
EL10Ac6g14628 Beta vulgaris HOM05D003438 ORTHO05D004235 2.2e-46 189.9 172 58.7
Lalb_Chr16g0392021 Lupinus albus HOM05D003438 ORTHO05D004235 3.8e-46 189.1 183 57.9
Phvul.005G022900 Phaseolus vulgaris HOM05D003438 ORTHO05D004235 3.8e-46 189.1 193 53.4
Manes.14G092500 Manihot esculenta HOM05D003438 ORTHO05D004235 8.4e-46 188.0 170 58.8
MELO3C012178.2 Cucumis melo HOM05D003438 ORTHO05D004235 1.4e-45 187.2 175 58.9
Migut.L01140 Erythranthe guttata HOM05D003438 ORTHO05D004235 1.9e-45 186.8 170 59.4
PGR119G1138 Punica granatum HOM05D003438 ORTHO05D004235 1.9e-45 186.8 173 57.2
ECA234G3211 Erigeron canadensis HOM05D003438 ORTHO05D004235 7.1e-45 184.9 172 58.1
Eucgr.G02402 Eucalyptus grandis HOM05D003438 ORTHO05D004235 9.3e-45 184.5 166 59.6
HanXRQChr16g0528311 Helianthus annuus HOM05D003438 ORTHO05D004235 9.3e-45 184.5 171 59.1
BolC2t08622H Brassica oleracea HOM05D003438 ORTHO05D004235 1.2e-44 184.1 170 59.4
MSTRG.795 Avicennia marina HOM05D003438 ORTHO05D004235 3.5e-44 182.6 170 58.8
Nn4g23588 Nelumbo nucifera HOM05D003438 ORTHO05D004235 3.5e-44 182.6 179 56.4
SGA_v2.0_scaffold16G07841 Striga asiatica HOM05D003438 ORTHO05D004235 4.6e-44 182.2 170 58.2
C02p25570 Brassica napus HOM05D003438 ORTHO05D004235 6.0e-44 181.8 170 58.8
THA.LOC104821983 Tarenaya hassleriana HOM05D003438 ORTHO05D004235 6.0e-44 181.8 170 55.9
A02p15460 Brassica napus HOM05D003438 ORTHO05D004235 2.3e-43 179.9 170 57.1
BraA02t06607Z Brassica rapa HOM05D003438 ORTHO05D004235 2.3e-43 179.9 170 57.1
PSO478G2917 Papaver somniferum HOM05D003438 ORTHO05D004235 2.3e-43 179.9 180 53.3
BcaB05g24430 Brassica carinata HOM05D003438 ORTHO05D004235 3.0e-43 179.5 170 57.6
Thhalv10017999m.g Eutrema salsugineum HOM05D003438 ORTHO05D004235 3.0e-43 179.5 170 57.6
Cc11_g11330 Coffea canephora HOM05D003438 ORTHO05D004235 5.1e-43 178.7 172 54.7
Sp5g24020 Schrenkiella parvula HOM05D003438 ORTHO05D004235 6.7e-43 178.3 170 56.5
AUR62007840 Chenopodium quinoa HOM05D003438 ORTHO05D004235 8.7e-43 177.9 172 56.4
Ah.12g061010 Amaranthus hybridus HOM05D003438 ORTHO05D004235 1.1e-42 177.6 172 54.7
Nitab4.5_0000591g0100 Nicotiana tabacum HOM05D003438 ORTHO05D004235 1.5e-42 177.2 170 55.9
Peaxi162Scf00396g01321 Petunia axillaris HOM05D003438 ORTHO05D004235 1.5e-42 177.2 170 54.7
CAN.G263.2 Capsicum annuum HOM05D003438 ORTHO05D004235 1.9e-42 176.8 156 57.1
Nitab4.5_0000149g0230 Nicotiana tabacum HOM05D003438 ORTHO05D004235 2.5e-42 176.4 170 55.9
Aa31sc12G150 Aethionema arabicum HOM05D003438 ORTHO05D004235 3.3e-42 176.0 170 56.5
PSO017G4740 Papaver somniferum HOM05D003438 ORTHO05D004235 4.3e-42 175.6 180 51.7
Psat4g082840 Pisum sativum HOM05D003438 ORTHO05D004235 5.7e-42 175.3 155 61.9
Sopen04g001190 Solanum pennellii HOM05D003438 ORTHO05D004235 1.6e-41 173.7 170 55.9
Oeu027415.2 Olea europaea HOM05D003438 ORTHO05D004235 2.8e-41 172.9 170 54.7
HPP92_019404 Vanilla planifolia HOM05D003438 ORTHO05D004235 2.8e-41 172.9 179 50.8
Hund25139 Selenicereus undatus HOM05D003438 ORTHO05D004235 3.7e-41 172.6 172 54.1
Solyc04g005190.2 Solanum lycopersicum HOM05D003438 ORTHO05D004235 3.7e-41 172.6 170 55.3
Lsat_1_v5_gn_4_21341 Lactuca sativa HOM05D003438 ORTHO05D004235 4.8e-41 172.2 173 57.2
Carub.0002s1552 Capsella rubella HOM05D003438 ORTHO05D004235 1.4e-40 170.6 156 59.0
CsaV3_5G033620 Cucumis sativus L. HOM05D003438 ORTHO05D004235 1.4e-40 170.6 164 58.5
CARHR061750 Cardamine hirsuta HOM05D003438 ORTHO05D004235 2.4e-40 169.9 156 58.3
ATR0691G173 Amborella trichopoda HOM05D003438 ORTHO05D004235 5.3e-40 168.7 180 51.1
CDE02G1987 Ceratophyllum demersum HOM05D003438 ORTHO05D004235 1.5e-39 167.2 179 52.0
AT1G68890 Arabidopsis thaliana HOM05D003438 ORTHO05D004235 2.6e-39 166.4 156 57.7
MBI14_g11750_MAGBIO Magnolia biondii HOM05D003438 ORTHO05D004235 2.9e-38 162.9 143 60.1
VMungo1080G0632 Vigna mungo HOM05D003438 ORTHO05D004235 2.5e-37 159.8 158 53.8
Psat2g052880 Pisum sativum HOM05D003438 ORTHO05D004235 1.3e-35 154.1 141 60.3
Rhsim09G0118400 Rhododendron simsii HOM05D003438 ORTHO05D004235 3.9e-35 152.5 174 50.6
SEGI_27375 Sequoiadendron giganteum HOM05D003438 ORTHO05D004235 1.9e-34 150.2 183 46.4
Dinv16579 Davidia involucrata HOM05D003438 ORTHO05D004235 2.5e-34 149.8 172 52.3
COL.COLO4_27762 Corchorus olitorius HOM05D003438 ORTHO05D004235 1.3e-33 147.5 172 50.6
Rhsim13G0143500 Rhododendron simsii HOM05D003438 ORTHO05D004235 8.2e-33 144.8 170 47.1
Ca_22509_v3 Cicer arietinum L. HOM05D003438 ORTHO05D004235 4.1e-32 142.5 180 49.4
ClCG05G023390 Citrullus lanatus HOM05D003438 ORTHO05D004235 5.0e-30 135.6 164 50.6
unitig_699.g19901 Utricularia gibba HOM05D003438 ORTHO05D004235 1.4e-29 134.0 170 46.5
Pp3c9_10620 Physcomitrium patens HOM05D003438 ORTHO05D004235 3.2e-29 132.9 184 41.8
AagrBONN_evm.TU.Sc2ySwM_228.2269 Anthoceros agrestis HOM05D003438 ORTHO05D004235 4.7e-28 129.0 153 46.4
SMO270G0066 Selaginella moellendorffii HOM05D003438 ORTHO05D004235 6.7e-27 125.2 160 46.2
FAN17G2039 Fragaria x ananassa HOM05D010351 ORTHO05D012326 1.5e-26 124.0 55 96.4
Mapoly0195s0004 Marchantia polymorpha HOM05D003438 ORTHO05D004235 4.8e-25 119.0 174 39.7
Psat7g028040 Pisum sativum HOM05D003438 ORTHO05D004235 2.0e-23 113.6 110 58.2
CBR_g48055 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-19 100.1 211 32.2
DCAR_023734 Daucus carota HOM05D003438 ORTHO05D004235 3.3e-18 96.3 172 37.8
AUR62003034 Chenopodium quinoa HOM05D003438 ORTHO05D004235 1.1e-16 91.3 172 37.2
FAN16G2393 Fragaria x ananassa HOM05D010351 ORTHO05D012326 3.1e-16 89.7 49 75.5
FAN11G1620 Fragaria x ananassa HOM05D010351 ORTHO05D012326 1.2e-15 87.8 49 75.5
RcHm_v2.0_Chr4g0437001 Rosa chinensis HOM05D010351 ORTHO05D012326 1.1e-13 81.3 55 70.9
MD13G1054500 Malus domestica HOM05D010351 ORTHO05D012326 1.2e-12 77.8 46 65.2
MD16G1053300 Malus domestica HOM05D010351 ORTHO05D012326 1.2e-12 77.8 44 68.2
Prupe.1G297400 Prunus persica HOM05D010351 ORTHO05D012326 3.0e-11 73.2 46 65.2
Eucgr.G02405 Eucalyptus grandis HOM05D010351 ORTHO05D012326 6.3e-09 65.5 57 52.6
Sabra10G0104200 Salix brachista HOM05D010351 ORTHO05D012326 6.3e-09 65.5 44 59.1
MCO05G676 Micromonas commoda HOM05D003438 ORTHO05D004235 8.2e-09 65.1 222 28.4
Potri.010G135633 Populus trichocarpa HOM05D010351 ORTHO05D012326 5.3e-08 62.4 36 63.9
GSVIVG01014279001 Vitis vinifera HOM05D010351 ORTHO05D012326 5.3e-08 62.4 36 63.9
TPR.G8080 Trifolium pratense HOM05D010351 ORTHO05D012326 1.6e-07 60.8 33 69.7
Medtr5g029510 Medicago truncatula HOM05D010351 ORTHO05D012326 3.5e-07 59.7 33 66.7
PRCOL_00004179 Prasinoderma coloniale HOM05D003438 ORTHO05D004235 4.5e-07 59.3 183 24.0
arahy.Tifrunner.gnm1.ann1.3A7NAK Arachis hypogaea HOM05D010351 ORTHO05D012326 5.9e-07 58.9 33 66.7
arahy.Tifrunner.gnm1.ann1.HAF84V Arachis hypogaea HOM05D010351 ORTHO05D012326 1.0e-06 58.2 33 66.7
Sc04g0007230 Simmondsia chinensis HOM05D010351 ORTHO05D012326 1.0e-06 58.2 36 63.9
Lalb_Chr07g0194951 Lupinus albus HOM05D010351 ORTHO05D012326 5.0e-06 55.8 48 50.0
Thecc.02G319300 Theobroma cacao HOM05D010351 ORTHO05D012326 5.0e-06 55.8 35 62.9


User provided reference genes

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