Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 3.6e-155 551.6 291 100.0
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 2.9e-152 542.0 291 97.6
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 5.4e-151 537.7 291 97.3
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 3.3e-148 528.5 309 91.9
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 5.6e-148 527.7 311 91.0
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 4.7e-147 524.6 291 90.7
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 4.6e-126 454.9 290 77.2
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 1.0e-125 453.8 290 76.6
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 1.3e-125 453.4 290 77.6
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 2.3e-125 452.6 290 76.6
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 6.7e-125 451.1 290 76.2
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 8.7e-125 450.7 291 76.6
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 1.5e-124 449.9 290 76.9
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 2.5e-124 449.1 290 76.2
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 4.3e-124 448.4 292 76.7
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 4.3e-124 448.4 290 75.9
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 5.6e-124 448.0 290 76.2
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 7.4e-124 447.6 290 75.5
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 9.6e-124 447.2 292 79.5
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 2.1e-123 446.0 291 80.1
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 3.7e-123 445.3 290 76.2
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 4.8e-123 444.9 290 75.2
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 8.2e-123 444.1 292 75.7
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 1.1e-122 443.7 291 75.9
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 1.4e-122 443.4 291 74.2
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 2.4e-122 442.6 290 77.2
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 4.0e-122 441.8 289 78.2
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 5.3e-122 441.4 292 78.8
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 5.3e-122 441.4 290 75.9
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 6.9e-122 441.0 291 73.9
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 6.9e-122 441.0 290 74.8
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 6.9e-122 441.0 290 75.2
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 1.2e-121 440.3 291 73.9
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.5e-121 439.9 291 77.3
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 3.4e-121 438.7 291 80.1
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 4.5e-121 438.3 291 73.5
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 4.5e-121 438.3 324 69.1
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 1.7e-120 436.4 290 77.9
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 1.7e-120 436.4 290 73.8
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 3.8e-120 435.3 321 68.8
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 4.9e-120 434.9 292 73.6
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 4.9e-120 434.9 290 73.8
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 8.4e-120 434.1 290 73.4
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 1.4e-119 433.3 290 73.4
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 1.4e-119 433.3 292 73.6
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 1.9e-119 433.0 291 79.7
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 2.5e-119 432.6 281 74.7
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 7.1e-119 431.0 290 73.4
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 7.1e-119 431.0 304 71.4
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 1.2e-118 430.3 290 72.1
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 2.1e-118 429.5 291 72.5
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 2.7e-118 429.1 295 76.3
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 3.5e-118 428.7 290 74.5
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 4.6e-118 428.3 290 71.7
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 6.0e-118 427.9 290 75.5
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 7.9e-118 427.6 290 73.1
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 3.9e-117 425.2 292 78.8
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 3.9e-117 425.2 291 75.6
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 5.1e-117 424.9 290 72.4
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 8.7e-117 424.1 290 72.4
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 1.5e-116 423.3 290 73.1
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 1.5e-116 423.3 291 72.2
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 5.7e-116 421.4 290 72.8
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 5.7e-116 421.4 290 72.8
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 1.3e-115 420.2 292 71.6
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 2.2e-115 419.5 290 71.7
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 6.3e-115 417.9 319 67.4
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 8.2e-115 417.5 271 76.8
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 1.1e-114 417.2 290 71.7
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 2.4e-114 416.0 292 71.9
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 2.4e-114 416.0 290 70.7
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 2.4e-114 416.0 292 72.3
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 4.1e-114 415.2 290 71.4
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 6.9e-114 414.5 290 75.9
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 6.9e-114 414.5 290 75.9
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 1.5e-113 413.3 296 68.9
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 2.0e-113 412.9 290 69.0
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 2.0e-113 412.9 294 68.7
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 5.9e-113 411.4 291 73.2
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 2.2e-112 409.5 290 71.7
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 2.9e-112 409.1 290 72.4
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 1.1e-111 407.1 297 71.7
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 1.1e-111 407.1 290 73.8
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 1.1e-111 407.1 290 70.0
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 1.9e-111 406.4 290 70.0
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 4.2e-111 405.2 291 70.8
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 6.1e-110 401.4 290 69.3
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 1.4e-109 400.2 283 72.4
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 1.4e-109 400.2 267 73.0
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 1.5e-108 396.7 290 72.1
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 2.5e-108 396.0 290 69.0
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 6.3e-107 391.3 290 68.6
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 6.3e-107 391.3 290 68.6
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 1.4e-106 390.2 320 63.8
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 1.8e-106 389.8 290 66.6
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 2.4e-106 389.4 291 70.4
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 4.1e-106 388.7 290 71.0
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 6.9e-106 387.9 291 71.1
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 9.1e-106 387.5 290 66.6
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 1.5e-105 386.7 290 72.1
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 4.5e-105 385.2 386 56.5
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 5.9e-105 384.8 290 71.7
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 1.3e-104 383.6 290 69.3
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 2.9e-104 382.5 290 68.3
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 5.0e-104 381.7 291 70.8
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 1.4e-103 380.2 290 68.6
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 4.2e-103 378.6 290 70.3
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 2.1e-102 376.3 290 66.9
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 2.7e-102 375.9 221 82.4
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 3.6e-102 375.6 290 64.8
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 3.6e-102 375.6 294 65.0
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 4.7e-102 375.2 290 66.9
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 4.1e-98 362.1 298 65.8
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 5.0e-96 355.1 291 61.2
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 2.7e-94 349.4 222 75.7
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 5.7e-92 341.7 260 71.5
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 4.1e-90 335.5 239 71.1
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 1.6e-89 333.6 221 71.5
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 3.5e-89 332.4 290 60.3
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 1.1e-87 327.4 218 72.5
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 3.2e-87 325.9 290 61.4
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 7.2e-87 324.7 293 59.0
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.6e-86 323.6 297 58.2
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 1.8e-85 320.1 189 81.0
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 5.7e-84 315.1 208 75.0
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 1.4e-82 310.5 286 55.9
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 1.9e-79 300.1 285 57.2
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 9.1e-74 281.2 297 49.8
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 1.0e-72 277.7 188 69.7
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 1.1e-71 274.2 296 49.7
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 9.5e-71 271.2 208 65.9
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 2.3e-69 266.5 187 68.4
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 4.5e-65 252.3 294 48.6
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.9e-58 230.3 291 47.4
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 3.4e-52 209.5 293 45.4
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 3.4e-52 209.5 293 45.4
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 3.4e-52 209.5 293 45.4
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 2.1e-49 200.3 267 48.3
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 1.7e-40 170.6 106 77.4
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 8.6e-40 168.3 103 79.6
CANSAT78G2262 Cannabis sativa HOM05D004410 ORTHO05D006134 1.2e-38 164.5 153 56.2
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 3.1e-37 159.8 157 56.1
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 8.9e-37 158.3 157 55.4
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 8.9e-37 158.3 157 55.4
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 2.0e-36 157.1 228 42.5
PSO210G2992 Papaver somniferum HOM05D004410 ORTHO05D006134 3.9e-32 142.9 85 81.2
MCO02G313 Micromonas commoda HOM05D004410 ORTHO05D006134 2.4e-29 133.7 194 38.1
CDE02G0278 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 1.9e-26 124.0 107 56.1
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 6.0e-25 119.0 73 76.7
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 6.0e-25 119.0 73 76.7
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 1.7e-24 117.5 72 76.4
TAR383G0746 Trochodendron aralioides HOM05D004410 ORTHO05D006134 3.0e-24 116.7 92 59.8
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 4.0e-21 106.3 79 67.1
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 6.9e-21 105.5 95 63.2
A02p08640 Brassica napus HOM05D004410 ORTHO05D097625 2.0e-20 104.0 188 41.0
Psat2g093080 Pisum sativum HOM05D000872 ORTHO05D000777 9.9e-20 101.7 60 76.7
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 6.4e-19 99.0 81 60.5
PSO724G1151 Papaver somniferum HOM05D004410 ORTHO05D305184 1.1e-13 81.6 86 52.3
Medtr4g007390 Medicago truncatula HOM05D004410 ORTHO05D006134 1.5e-12 77.8 57 63.2
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 2.2e-11 73.9 231 30.3
GSVIVG01006242001 Vitis vinifera HOM05D004410 ORTHO05D006134 1.1e-07 61.6 56 58.9
GSVIVG01012952001 Vitis vinifera HOM05D004410 ORTHO05D439300 6.2e-06 55.8 44 54.5


User provided reference genes

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