Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.9e-95 352.4 168 100.0
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 1.5e-92 342.8 166 97.0
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.5e-92 342.8 166 97.0
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 3.4e-89 331.6 166 94.6
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 6.4e-88 327.4 166 94.6
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.9e-87 325.9 166 94.0
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 1.3e-83 313.2 165 89.7
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 4.5e-73 278.1 177 75.1
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 1.9e-68 262.7 177 71.2
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 2.0e-65 252.7 180 67.2
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 2.9e-64 248.8 174 68.4
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 2.9e-64 248.8 174 68.4
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 2.9e-64 248.8 173 67.6
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 6.5e-64 247.7 195 63.6
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 1.1e-63 246.9 195 63.6
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.1e-63 246.9 120 93.3
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 4.2e-63 245.0 174 68.4
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 5.5e-63 244.6 175 66.3
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 7.2e-63 244.2 174 67.8
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 1.0e-61 240.4 172 68.6
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 1.8e-61 239.6 195 62.6
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 3.0e-61 238.8 172 67.4
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 3.9e-61 238.4 169 65.7
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 6.7e-61 237.7 179 62.0
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 1.5e-60 236.5 175 64.6
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 2.5e-60 235.7 180 62.2
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.6e-59 233.0 172 62.2
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 2.8e-59 232.3 180 62.2
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 3.7e-59 231.9 169 63.9
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 6.3e-59 231.1 177 62.1
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 6.3e-59 231.1 176 64.2
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 6.9e-58 227.6 180 58.9
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 9.0e-58 227.3 175 61.1
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 1.2e-57 226.9 174 64.4
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 2.6e-57 225.7 171 61.4
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 5.9e-57 224.6 163 63.8
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 5.9e-57 224.6 170 64.1
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 1.0e-56 223.8 175 61.1
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 2.9e-56 222.2 179 59.2
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 5.0e-56 221.5 176 58.5
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 2.5e-55 219.2 171 61.4
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 4.2e-55 218.4 179 60.3
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 4.2e-55 218.4 157 63.7
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 5.5e-55 218.0 206 52.4
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 9.4e-55 217.2 175 60.6
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 1.2e-54 216.9 164 61.6
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 1.0e-53 213.8 160 62.5
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 1.0e-53 213.8 174 58.6
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 1.4e-53 213.4 207 52.2
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 1.8e-53 213.0 163 62.0
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 1.8e-53 213.0 171 58.5
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 5.1e-53 211.5 147 66.7
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.5e-52 209.9 166 60.2
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 2.0e-52 209.5 163 60.1
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 2.5e-52 209.1 166 61.4
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 5.7e-52 208.0 173 59.5
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 1.7e-51 206.5 185 54.1
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 2.2e-51 206.1 164 61.6
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 2.8e-51 205.7 168 59.5
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 3.7e-51 205.3 129 69.0
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 3.7e-51 205.3 129 69.8
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 4.8e-51 204.9 165 60.6
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 4.8e-51 204.9 171 55.6
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 4.8e-51 204.9 166 59.0
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 1.4e-50 203.4 168 59.5
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 1.4e-50 203.4 163 62.6
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 1.4e-50 203.4 151 60.3
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 1.4e-50 203.4 169 59.2
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 1.4e-50 203.4 163 58.3
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 1.8e-50 203.0 168 58.3
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 3.1e-50 202.2 168 59.5
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 3.1e-50 202.2 174 54.6
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 4.1e-50 201.8 177 57.1
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 4.1e-50 201.8 177 57.1
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 5.3e-50 201.4 156 59.6
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 5.3e-50 201.4 156 59.6
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 5.3e-50 201.4 156 59.6
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 5.3e-50 201.4 156 59.6
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 5.3e-50 201.4 169 60.4
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 6.9e-50 201.1 163 60.1
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 1.2e-49 200.3 156 59.0
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 1.2e-49 200.3 156 59.0
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 1.5e-49 199.9 127 70.1
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 3.4e-49 198.7 170 52.9
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 3.4e-49 198.7 159 59.1
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 4.5e-49 198.4 117 73.5
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 7.7e-49 197.6 126 68.3
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 7.7e-49 197.6 126 68.3
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 1.0e-48 197.2 115 72.2
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 1.3e-48 196.8 148 60.8
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 1.7e-48 196.4 160 55.6
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 1.7e-48 196.4 156 57.7
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 1.7e-48 196.4 174 54.6
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 2.9e-48 195.7 117 70.1
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.9e-48 195.7 162 58.6
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 8.5e-48 194.1 169 57.4
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 2.5e-47 192.6 126 66.7
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 1.6e-46 189.9 160 57.5
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.6e-46 189.9 175 54.3
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 2.1e-46 189.5 158 55.7
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 6.1e-46 188.0 174 53.4
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 1.0e-45 187.2 171 52.0
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 1.8e-45 186.4 171 52.0
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 2.3e-45 186.0 160 56.2
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 8.8e-45 184.1 159 56.0
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 8.8e-45 184.1 159 56.0
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 8.8e-45 184.1 159 56.0
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 1.5e-44 183.3 161 53.4
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 3.3e-44 182.2 156 56.4
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 3.3e-44 182.2 118 67.8
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 4.4e-44 181.8 170 53.5
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 9.7e-44 180.6 149 54.4
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 9.7e-44 180.6 173 50.3
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 9.7e-44 180.6 117 66.7
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 1.7e-43 179.9 121 64.5
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 3.7e-43 178.7 153 54.9
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 6.3e-43 177.9 159 51.6
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 1.1e-42 177.2 126 61.1
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 7.0e-42 174.5 126 61.9
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 9.1e-42 174.1 117 62.4
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 1.6e-41 173.3 116 63.8
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 1.6e-41 173.3 170 51.2
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 4.5e-41 171.8 144 53.5
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 1.0e-40 170.6 129 58.9
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 1.0e-40 170.6 165 52.7
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 1.3e-40 170.2 155 52.9
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 1.3e-40 170.2 192 45.3
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.3e-40 170.2 123 59.3
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 2.2e-40 169.5 159 52.2
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 3.8e-40 168.7 145 55.9
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 5.5e-39 164.9 122 58.2
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.4e-37 160.2 119 58.0
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 6.7e-37 157.9 112 59.8
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 2.6e-36 156.0 181 45.3
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 1.3e-35 153.7 167 45.5
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 8.2e-35 151.0 128 53.9
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.1e-34 149.1 108 60.2
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 1.2e-33 147.1 115 55.7
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 4.5e-33 145.2 125 53.6
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 1.0e-32 144.1 168 40.5
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 1.7e-32 143.3 119 49.6
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 1.9e-31 139.8 164 44.5
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 5.5e-31 138.3 109 61.5
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 2.7e-30 136.0 116 52.6
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 2.3e-29 132.9 123 47.2
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 6.8e-29 131.3 96 58.3
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 8.8e-29 131.0 109 57.8
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 4.4e-28 128.6 112 51.8
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 6.3e-27 124.8 96 58.3
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.1e-26 124.0 88 62.5
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 1.4e-26 123.6 114 50.0
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.6e-25 120.2 84 57.1
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 7.7e-25 117.9 107 43.9
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 2.2e-24 116.3 118 45.8
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 2.9e-24 115.9 137 45.3
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 2.5e-23 112.8 150 38.7
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 4.2e-23 112.1 119 43.7
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 4.2e-23 112.1 117 50.4
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 7.2e-23 111.3 130 43.8
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 4.0e-21 105.5 114 43.9
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 2.0e-20 103.2 145 39.3
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.6e-20 102.8 107 45.8
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 9.8e-20 100.9 53 81.1
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.3e-19 100.5 72 61.1
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 1.7e-19 100.1 127 44.1
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 1.4e-18 97.1 114 40.4
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.5e-17 92.4 68 52.9
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 7.3e-15 84.7 100 40.0
Zm00001eb275620 Zea mays HOM05D004187 ORTHO05D004890 2.0e-12 76.6 49 69.4
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 4.9e-11 72.0 99 38.4
Potri.010G083751 Populus trichocarpa HOM05D004187 ORTHO05D004890 7.0e-10 68.2 41 65.9
BcaB03g14654 Brassica carinata HOM05D004187 ORTHO05D004890 2.0e-09 66.6 75 38.7


User provided reference genes

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