Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G0293 Fragaria x ananassa HOM05D002824 ORTHO05D008771 3.3e-56 221.5 112 100.0
FAN10G1907 Fragaria x ananassa HOM05D002824 ORTHO05D005776 6.5e-44 180.6 100 93.0
RcHm_v2.0_CPg0501881 Rosa chinensis HOM05D002824 ORTHO05D008771 3.0e-17 92.0 55 85.5
HanXRQChr00c0394g0574551 Helianthus annuus HOM05D002824 ORTHO05D008771 3.8e-12 75.1 80 55.0
HanXRQChr00c0593g0576361 Helianthus annuus HOM05D002824 ORTHO05D008771 3.8e-12 75.1 80 55.0
HanXRQChr00c0925g0577891 Helianthus annuus HOM05D002824 ORTHO05D008771 3.8e-12 75.1 80 55.0
HanXRQChr01g0020221 Helianthus annuus HOM05D002824 ORTHO05D008771 3.8e-12 75.1 80 55.0
HanXRQChr04g0127491 Helianthus annuus HOM05D002824 ORTHO05D008771 3.8e-12 75.1 80 55.0
HanXRQChr05g0152571 Helianthus annuus HOM05D002824 ORTHO05D008771 3.8e-12 75.1 80 55.0
HanXRQChr10g0284381 Helianthus annuus HOM05D002824 ORTHO05D008771 3.8e-12 75.1 80 55.0
HanXRQChr10g0318061 Helianthus annuus HOM05D002824 ORTHO05D008771 3.8e-12 75.1 80 55.0
HanXRQChr11g0321091 Helianthus annuus HOM05D002824 ORTHO05D008771 3.8e-12 75.1 80 55.0
HanXRQChr11g0326961 Helianthus annuus HOM05D002824 ORTHO05D008771 3.8e-12 75.1 80 55.0
HanXRQChr12g0369851 Helianthus annuus HOM05D002824 ORTHO05D008771 3.8e-12 75.1 80 55.0
HanXRQChr15g0486561 Helianthus annuus HOM05D002824 ORTHO05D008771 3.8e-12 75.1 80 55.0
HanXRQCPg0580181 Helianthus annuus HOM05D002824 ORTHO05D008771 3.8e-12 75.1 80 55.0
DCAR_032520 Daucus carota HOM05D002824 ORTHO05D008771 8.5e-12 73.9 80 53.8
Sc25g0002050 Simmondsia chinensis HOM05D000964 ORTHO05D001488 1.9e-11 72.8 80 53.8
PSO548G0003 Papaver somniferum HOM05D002824 ORTHO05D008771 9.4e-11 70.5 80 51.2
Ah.10g027210 Amaranthus hybridus HOM05D000964 ORTHO05D001488 3.6e-10 68.6 80 51.2
Ah.10g027340 Amaranthus hybridus HOM05D000964 ORTHO05D001488 3.6e-10 68.6 80 51.2
Ah.10g027460 Amaranthus hybridus HOM05D000964 ORTHO05D001488 3.6e-10 68.6 80 51.2
Ah.10g028980 Amaranthus hybridus HOM05D000964 ORTHO05D001488 3.6e-10 68.6 80 51.2
EL10Ac5g11668 Beta vulgaris HOM05D002824 ORTHO05D008771 3.6e-10 68.6 80 51.2
Hma1.2p1_0818F.1_g223320 Hydrangea macrophylla HOM05D002824 ORTHO05D008771 8.0e-10 67.4 75 53.3
Eucgr.G00343 Eucalyptus grandis HOM05D002824 ORTHO05D008771 1.0e-09 67.0 78 48.7
Oeu054718.1 Olea europaea HOM05D002824 ORTHO05D008771 1.8e-09 66.2 80 51.2
PGR042G2139 Punica granatum HOM05D002824 ORTHO05D008771 1.8e-09 66.2 78 48.7
Lj3g0012155 Lotus japonicus HOM05D002824 ORTHO05D008771 2.3e-09 65.9 62 53.2
Lalb_Chr01g0006541 Lupinus albus HOM05D002824 ORTHO05D008771 4.0e-09 65.1 62 53.2
Sc20g0004270 Simmondsia chinensis HOM05D000964 ORTHO05D001488 4.0e-09 65.1 61 55.7
arahy.Tifrunner.gnm1.ann1.RFE8PP Arachis hypogaea HOM05D002824 ORTHO05D008771 5.2e-09 64.7 62 51.6
TPR.G40092 Trifolium pratense HOM05D002824 ORTHO05D008771 6.8e-09 64.3 65 50.8
MELO3C027648.2 Cucumis melo HOM05D002824 ORTHO05D008771 8.8e-09 63.9 80 50.0
Sc16g0004450 Simmondsia chinensis HOM05D002824 ORTHO05D008771 1.2e-08 63.5 80 48.8
Psat4g172920 Pisum sativum HOM05D002824 ORTHO05D008771 1.5e-08 63.2 65 49.2
Aqoxy7G01548 Aquilegia oxysepala HOM05D002824 ORTHO05D008771 2.6e-08 62.4 77 44.2
Medtr8g061130 Medicago truncatula HOM05D002824 ORTHO05D008771 3.4e-08 62.0 62 48.4
Phvul.003G183400 Phaseolus vulgaris HOM05D002824 ORTHO05D008771 3.4e-08 62.0 62 50.0
VMungo1215G1991 Vigna mungo HOM05D002824 ORTHO05D008771 3.4e-08 62.0 62 50.0
HanXRQChr02g0052601 Helianthus annuus HOM05D002824 ORTHO05D008771 4.4e-08 61.6 59 57.6
Prupe.4G182300 Prunus persica HOM05D002824 ORTHO05D008771 4.4e-08 61.6 70 44.3
Cpa.g.sc321.5 Carica papaya HOM05D002824 ORTHO05D008771 5.7e-08 61.2 74 48.6
Duzib205G1549 Durio zibethinus HOM05D002824 ORTHO05D008771 5.7e-08 61.2 76 42.1
Nitab4.5_0000676g0190 Nicotiana tabacum HOM05D002824 ORTHO05D008771 5.7e-08 61.2 66 50.0
Nitab4.5_0005206g0060 Nicotiana tabacum HOM05D002824 ORTHO05D008771 5.7e-08 61.2 66 50.0
Peaxi162Scf00652g00418 Petunia axillaris HOM05D002824 ORTHO05D008771 5.7e-08 61.2 66 50.0
Thecc.03G290100 Theobroma cacao HOM05D002824 ORTHO05D008771 5.7e-08 61.2 76 42.1
Glyma.17G080200 Glycine max HOM05D002824 ORTHO05D008771 7.5e-08 60.8 62 48.4
CsaV3_4G033730 Cucumis sativus L. HOM05D002824 ORTHO05D008771 9.8e-08 60.5 78 41.0
Gohir.A12G232300 Gossypium hirsutum HOM05D002824 ORTHO05D008771 9.8e-08 60.5 75 42.7
Gohir.D12G235100 Gossypium hirsutum HOM05D002824 ORTHO05D008771 9.8e-08 60.5 75 42.7
Gorai.008G251300 Gossypium raimondii HOM05D002824 ORTHO05D008771 9.8e-08 60.5 75 42.7
ClCG11G018100 Citrullus lanatus HOM05D002824 ORTHO05D008771 1.7e-07 59.7 78 44.9
COL.COLO4_21755 Corchorus olitorius HOM05D002824 ORTHO05D008771 1.7e-07 59.7 62 45.2
MELO3C016702.2 Cucumis melo HOM05D002824 ORTHO05D008771 1.7e-07 59.7 62 48.4
MELO3C032365.2 Cucumis melo HOM05D002824 ORTHO05D008771 1.7e-07 59.7 80 47.5
FAN11G2965 Fragaria x ananassa HOM05D002824 ORTHO05D008771 1.7e-07 59.7 78 39.7
FAN21G0827 Fragaria x ananassa HOM05D002824 ORTHO05D008771 1.7e-07 59.7 78 39.7
Glyma.05G019600 Glycine max HOM05D002824 ORTHO05D008771 1.7e-07 59.7 62 46.8
Lsat_1_v5_gn_2_92080 Lactuca sativa HOM05D000964 ORTHO05D004047 1.7e-07 59.7 83 48.2
Lsat_1_v5_gn_3_81720 Lactuca sativa HOM05D000964 ORTHO05D003870 1.7e-07 59.7 83 48.2
Lsat_1_v5_gn_6_69061 Lactuca sativa HOM05D000964 ORTHO05D004047 1.7e-07 59.7 83 48.2
Lsat_1_v5_gn_8_146180 Lactuca sativa HOM05D000964 ORTHO05D003870 1.7e-07 59.7 83 48.2
Manes.07G025200 Manihot esculenta HOM05D002824 ORTHO05D008771 1.7e-07 59.7 78 41.0
Manes.10G116800 Manihot esculenta HOM05D002824 ORTHO05D008771 1.7e-07 59.7 78 41.0
Solyc12g098350.1 Solanum lycopersicum HOM05D002824 ORTHO05D008771 1.7e-07 59.7 66 48.5
Sopen12g033130 Solanum pennellii HOM05D002824 ORTHO05D008771 1.7e-07 59.7 66 48.5
PGSC0003DMG400007705 Solanum tuberosum HOM05D002824 ORTHO05D008771 1.7e-07 59.7 66 48.5
CAN.G767.42 Capsicum annuum HOM05D002824 ORTHO05D008771 2.2e-07 59.3 63 49.2
QL08p021656 Quercus lobata HOM05D002824 ORTHO05D008771 2.2e-07 59.3 63 49.2
Sed0016999 Sechium edule HOM05D002824 ORTHO05D008771 2.2e-07 59.3 80 43.8
Ciclev10022760m.g Citrus clementina HOM05D002824 ORTHO05D008771 3.7e-07 58.5 64 45.3
Duzib084G0020 Durio zibethinus HOM05D002824 ORTHO05D008771 4.8e-07 58.2 76 40.8
Lsat_1_v5_gn_0_41600 Lactuca sativa HOM05D000964 ORTHO05D004047 6.3e-07 57.8 66 53.0
Potri.006G241100 Populus trichocarpa HOM05D002824 ORTHO05D008771 6.3e-07 57.8 62 45.2
Potri.018G038900 Populus trichocarpa HOM05D002824 ORTHO05D008771 6.3e-07 57.8 62 45.2
CiPaw.11G169000 Carya illinoinensis HOM05D002824 ORTHO05D008771 1.1e-06 57.0 76 39.5
Atru.chr9.2077 Acer truncatum HOM05D002824 ORTHO05D008771 1.4e-06 56.6 63 42.9
Lsat_1_v5_gn_2_136980 Lactuca sativa HOM05D002824 ORTHO05D008771 1.4e-06 56.6 62 46.8
Atru.chr1.2540 Acer truncatum HOM05D002824 ORTHO05D008771 1.8e-06 56.2 63 41.3
Lsat_1_v5_gn_5_50421 Lactuca sativa HOM05D000964 ORTHO05D003870 2.4e-06 55.8 95 42.1
Sabra06G0188500 Salix brachista HOM05D002824 ORTHO05D008771 2.4e-06 55.8 65 43.1
Hund04057 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-06 55.8 78 44.9
Hund08802 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-06 55.8 78 44.9
Hund12527 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-06 55.8 78 44.9
Hund19320 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-06 55.8 78 44.9
Hund27962 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-06 55.8 78 44.9
Hund27985 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-06 55.8 78 44.9
Hund28109 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-06 55.8 78 44.9
Hund28268 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-06 55.8 78 44.9
Hund28459 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-06 55.8 78 44.9
Hund28519 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-06 55.8 78 44.9
Hund28529 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-06 55.8 78 44.9
Hund28632 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-06 55.8 78 44.9
Hund28678 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-06 55.8 78 44.9
Hund28746 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-06 55.8 78 44.9
Hund28759 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-06 55.8 78 44.9
Hund28778 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-06 55.8 78 44.9
Hund28846 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-06 55.8 78 44.9
Hund29022 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-06 55.8 78 44.9
Hund29036 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-06 55.8 78 44.9
Hund29217 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-06 55.8 78 44.9
Hund29505 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-06 55.8 78 44.9
Hund29525 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-06 55.8 78 44.9
Hund29537 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-06 55.8 78 44.9
Hund29554 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-06 55.8 78 44.9
Hund29593 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-06 55.8 78 44.9
Hund29605 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-06 55.8 78 44.9
Hund29612 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-06 55.8 78 44.9
Hund29682 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-06 55.8 78 44.9
Hund29957 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-06 55.8 78 44.9
Hund30031 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-06 55.8 78 44.9
Hund30069 Selenicereus undatus HOM05D002824 ORTHO05D008771 2.4e-06 55.8 78 44.9
Hund30272 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-06 55.8 78 44.9
Hund30490 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-06 55.8 78 44.9
Hund30495 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-06 55.8 78 44.9
Hund30544 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-06 55.8 78 44.9
Aa31LG9G11000 Aethionema arabicum HOM05D002824 ORTHO05D008771 4.1e-06 55.1 64 43.8
AL6G45360 Arabidopsis lyrata HOM05D002824 ORTHO05D008771 4.1e-06 55.1 63 44.4
AT4G11175 Arabidopsis thaliana HOM05D002824 ORTHO05D008771 4.1e-06 55.1 63 44.4
BcaB01g01596 Brassica carinata HOM05D002824 ORTHO05D008771 4.1e-06 55.1 63 44.4
Carub.0006s3001 Capsella rubella HOM05D002824 ORTHO05D008771 4.1e-06 55.1 63 44.4
CARHR255400 Cardamine hirsuta HOM05D002824 ORTHO05D008771 4.1e-06 55.1 63 44.4
Thhalv10029051m.g Eutrema salsugineum HOM05D002824 ORTHO05D008771 4.1e-06 55.1 63 44.4
Sp6g06240 Schrenkiella parvula HOM05D002824 ORTHO05D008771 4.1e-06 55.1 63 44.4
BcaB05g23855 Brassica carinata HOM05D002824 ORTHO05D008771 5.4e-06 54.7 60 45.0
A09p28030 Brassica napus HOM05D002824 ORTHO05D008771 5.4e-06 54.7 60 45.0
BraA09t38371Z Brassica rapa HOM05D002824 ORTHO05D008771 5.4e-06 54.7 60 45.0
MD11G1244000 Malus domestica HOM05D002824 ORTHO05D008771 5.4e-06 54.7 62 45.2
Sc20g0003000 Simmondsia chinensis HOM05D002824 ORTHO05D008771 5.4e-06 54.7 55 50.9
BcaC04g21113 Brassica carinata HOM05D002824 ORTHO05D008771 7.0e-06 54.3 60 43.3
C09p35540 Brassica napus HOM05D002824 ORTHO05D008771 7.0e-06 54.3 60 43.3
BolC9t56393H Brassica oleracea HOM05D002824 ORTHO05D008771 7.0e-06 54.3 60 43.3


User provided reference genes

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