Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G1679 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.7e-182 642.5 308 100.0
FAN21G3611 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.7e-182 642.5 308 100.0
FvH4_3g22400 Fragaria vesca HOM05D003931 ORTHO05D004577 5.0e-171 604.4 305 95.1
FAN11G2983 Fragaria x ananassa HOM05D003931 ORTHO05D004577 6.5e-171 604.0 305 95.1
FAN16G2486 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.2e-169 599.7 305 94.8
RcHm_v2.0_Chr5g0039071 Rosa chinensis HOM05D003931 ORTHO05D004577 2.0e-167 592.4 306 92.2
Prupe.4G210600 Prunus persica HOM05D003931 ORTHO05D004577 4.6e-140 501.5 308 80.2
MD11G1221200 Malus domestica HOM05D003931 ORTHO05D004577 6.4e-134 481.1 311 75.6
MD03G1205300 Malus domestica HOM05D003931 ORTHO05D004577 1.1e-133 480.3 320 74.1
QL08p011429 Quercus lobata HOM05D003931 ORTHO05D004577 6.0e-132 474.6 308 75.6
QL08p011634 Quercus lobata HOM05D003931 ORTHO05D004577 6.0e-132 474.6 308 75.6
QL08p011649 Quercus lobata HOM05D003931 ORTHO05D004577 6.0e-132 474.6 308 75.6
CiPaw.11G187800 Carya illinoinensis HOM05D003931 ORTHO05D004577 6.2e-129 464.5 301 75.1
Cfa020372 Carpinus fangiana HOM05D003931 ORTHO05D004577 5.8e-127 458.0 301 72.8
Haze_09657 Corylus avellana HOM05D003931 ORTHO05D004577 9.9e-127 457.2 305 72.1
Hma1.2p1_1271F.1_g271720 Hydrangea macrophylla HOM05D003931 ORTHO05D004577 1.4e-125 453.4 307 73.9
TWI38G0918 Tripterygium wilfordii HOM05D003931 ORTHO05D004577 2.1e-124 449.5 301 71.4
ClCG10G005490 Citrullus lanatus HOM05D003931 ORTHO05D004577 1.0e-123 447.2 315 68.9
Atru.chr2.3378 Acer truncatum HOM05D003931 ORTHO05D004577 1.7e-123 446.4 310 69.7
MELO3C025390.2 Cucumis melo HOM05D003931 ORTHO05D004577 3.6e-121 438.7 312 67.9
CsaV3_3G005230 Cucumis sativus L. HOM05D003931 ORTHO05D004577 3.1e-120 435.6 310 67.4
Manes.15G073200 Manihot esculenta HOM05D003931 ORTHO05D004577 1.2e-119 433.7 304 68.4
CANSAT64G1454 Cannabis sativa HOM05D003931 ORTHO05D004577 2.0e-119 433.0 297 70.7
Ca_14721_v3 Cicer arietinum L. HOM05D003931 ORTHO05D004577 2.0e-119 433.0 307 69.1
Potri.001G424700 Populus trichocarpa HOM05D003931 ORTHO05D004577 2.6e-119 432.6 303 67.7
Dinv40740 Davidia involucrata HOM05D003931 ORTHO05D004577 4.4e-119 431.8 288 72.6
Sed0028072 Sechium edule HOM05D003931 ORTHO05D004577 4.4e-119 431.8 311 67.5
Eucgr.F00963 Eucalyptus grandis HOM05D003931 ORTHO05D004577 1.1e-117 427.2 291 70.8
Sabra11G0123500 Salix brachista HOM05D003931 ORTHO05D004577 1.2e-116 423.7 300 66.0
Glyma.18G099500 Glycine max HOM05D003931 ORTHO05D004577 1.6e-116 423.3 292 69.9
Gorai.002G087700 Gossypium raimondii HOM05D003931 ORTHO05D004577 2.7e-116 422.5 299 67.6
Carub.0007s1381 Capsella rubella HOM05D003931 ORTHO05D004577 4.6e-116 421.8 287 68.3
Gohir.D01G065800 Gossypium hirsutum HOM05D003931 ORTHO05D004577 6.0e-116 421.4 299 67.2
Gohir.A01G078700 Gossypium hirsutum HOM05D003931 ORTHO05D004577 7.8e-116 421.0 299 67.6
Medtr3g051220 Medicago truncatula HOM05D003931 ORTHO05D004577 1.3e-115 420.2 311 66.6
TPR.G16574 Trifolium pratense HOM05D003931 ORTHO05D004577 1.7e-115 419.9 309 68.3
Migut.M01779 Erythranthe guttata HOM05D003931 ORTHO05D004577 2.3e-115 419.5 281 69.0
Actinidia09908 Actinidia chinensis HOM05D003931 ORTHO05D004577 5.1e-115 418.3 291 71.1
THA.LOC104809192 Tarenaya hassleriana HOM05D003931 ORTHO05D004577 5.1e-115 418.3 270 72.6
Oeu042929.1 Olea europaea HOM05D003931 ORTHO05D004577 6.6e-115 417.9 304 65.1
Sabra16G0288300 Salix brachista HOM05D003931 ORTHO05D004577 6.6e-115 417.9 305 65.2
Thhalv10027264m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 8.7e-115 417.5 298 67.8
Lsat_1_v5_gn_5_6120 Lactuca sativa HOM05D003931 ORTHO05D004577 1.1e-114 417.2 273 71.8
Ciclev10009005m.g Citrus clementina HOM05D003931 ORTHO05D004577 2.5e-114 416.0 293 69.6
Phvul.006G040800 Phaseolus vulgaris HOM05D003931 ORTHO05D004577 2.1e-113 412.9 297 65.7
VMungo0540G1582 Vigna mungo HOM05D003931 ORTHO05D004577 2.1e-113 412.9 301 66.1
MSTRG.6909 Avicennia marina HOM05D003931 ORTHO05D004577 2.8e-113 412.5 247 75.7
AUR62015742 Chenopodium quinoa HOM05D003931 ORTHO05D004577 6.2e-113 411.4 282 67.0
Glyma.08G314700 Glycine max HOM05D003931 ORTHO05D004577 6.2e-113 411.4 304 65.1
BraA01t01774Z Brassica rapa HOM05D003931 ORTHO05D004577 1.1e-112 410.6 306 65.7
AUR62020469 Chenopodium quinoa HOM05D003931 ORTHO05D004577 1.1e-112 410.6 310 63.5
vmacro11735 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 1.1e-112 410.6 310 64.2
BcaB03g12524 Brassica carinata HOM05D003931 ORTHO05D004577 1.4e-112 410.2 285 68.1
Psat5g180680 Pisum sativum HOM05D003931 ORTHO05D004577 1.4e-112 410.2 316 65.2
C01p23150 Brassica napus HOM05D003931 ORTHO05D004577 1.8e-112 409.8 309 65.7
A01p18190 Brassica napus HOM05D003931 ORTHO05D004577 3.1e-112 409.1 306 65.0
BolC1t02250H Brassica oleracea HOM05D003931 ORTHO05D004577 3.1e-112 409.1 306 65.0
Nitab4.5_0001604g0100 Nicotiana tabacum HOM05D003931 ORTHO05D004577 4.0e-112 408.7 290 67.2
Aqoxy1G03269 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 6.9e-112 407.9 303 63.7
BraA08t34014Z Brassica rapa HOM05D003931 ORTHO05D004577 6.9e-112 407.9 298 65.4
Aa31LG5G10360 Aethionema arabicum HOM05D003931 ORTHO05D004577 1.2e-111 407.1 303 65.7
Lj6g0018199 Lotus japonicus HOM05D003931 ORTHO05D004577 1.2e-111 407.1 315 64.8
Nn1g03571 Nelumbo nucifera HOM05D003931 ORTHO05D004577 1.5e-111 406.8 293 64.2
A08p20580 Brassica napus HOM05D003931 ORTHO05D004577 2.6e-111 406.0 298 65.1
Sc03g0008690 Simmondsia chinensis HOM05D003931 ORTHO05D004577 2.6e-111 406.0 302 64.2
BcaC07g38267 Brassica carinata HOM05D003931 ORTHO05D004577 9.9e-111 404.1 304 63.8
C08p10140 Brassica napus HOM05D003931 ORTHO05D004577 9.9e-111 404.1 304 63.8
BolC8t48692H Brassica oleracea HOM05D003931 ORTHO05D004577 9.9e-111 404.1 304 63.8
Sp7g25010 Schrenkiella parvula HOM05D003931 ORTHO05D004577 9.9e-111 404.1 305 64.3
Ah.04g165790 Amaranthus hybridus HOM05D003931 ORTHO05D004577 1.7e-110 403.3 284 66.9
Lsat_1_v5_gn_5_6180 Lactuca sativa HOM05D003931 ORTHO05D004577 1.7e-110 403.3 288 66.3
HanXRQChr05g0159031 Helianthus annuus HOM05D003931 ORTHO05D004577 2.9e-110 402.5 302 64.9
Lj1C870G17 Lonicera japonica HOM05D003931 ORTHO05D004577 2.9e-110 402.5 262 72.9
AL7G25800 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 8.4e-110 401.0 317 60.9
CARHR234700 Cardamine hirsuta HOM05D003931 ORTHO05D004577 8.4e-110 401.0 326 59.8
Cc05_g13590 Coffea canephora HOM05D003931 ORTHO05D004577 1.1e-109 400.6 333 62.2
EL10Ac4g07844 Beta vulgaris HOM05D003931 ORTHO05D004577 1.9e-109 399.8 287 66.2
TAR626G0527 Trochodendron aralioides HOM05D003931 ORTHO05D004577 2.4e-109 399.4 260 71.5
CAN.G337.115 Capsicum annuum HOM05D003931 ORTHO05D004577 3.2e-109 399.1 286 64.7
Lalb_Chr02g0155621 Lupinus albus HOM05D003931 ORTHO05D004577 4.2e-109 398.7 300 65.0
arahy.Tifrunner.gnm1.ann1.07EMGU Arachis hypogaea HOM05D003931 ORTHO05D004577 5.4e-109 398.3 305 63.3
PGSC0003DMG400022225 Solanum tuberosum HOM05D003931 ORTHO05D004577 1.2e-108 397.1 263 68.1
Thecc.07G042800 Theobroma cacao HOM05D003931 ORTHO05D004577 1.2e-108 397.1 238 73.1
PGR083G2742 Punica granatum HOM05D003931 ORTHO05D004577 2.1e-108 396.4 236 78.0
Solyc07g064410.1 Solanum lycopersicum HOM05D003931 ORTHO05D004577 7.8e-108 394.4 262 67.2
Sopen07g032620 Solanum pennellii HOM05D003931 ORTHO05D004577 1.7e-107 393.3 262 66.4
Lalb_Chr06g0171911 Lupinus albus HOM05D003931 ORTHO05D004577 3.9e-107 392.1 296 64.5
SGA_v2.0_scaffold172G38997 Striga asiatica HOM05D003931 ORTHO05D004577 1.9e-106 389.8 291 63.9
AT4G27030 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 5.6e-106 388.3 326 58.6
Thhalv10025879m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 9.0e-104 380.9 307 60.6
DCAR_008677 Daucus carota HOM05D003931 ORTHO05D004577 5.8e-103 378.3 292 62.7
Sp7g24990 Schrenkiella parvula HOM05D003931 ORTHO05D004577 1.4e-101 373.6 294 59.9
unitig_62.g23279 Utricularia gibba HOM05D003931 ORTHO05D004577 5.4e-101 371.7 274 62.4
Sc03g0008680 Simmondsia chinensis HOM05D003931 ORTHO05D004577 1.2e-100 370.5 311 59.2
CARHR049940 Cardamine hirsuta HOM05D003931 ORTHO05D004577 3.5e-100 369.0 272 61.4
QL08p011463 Quercus lobata HOM05D003931 ORTHO05D004577 6.0e-100 368.2 241 71.4
PSO675G5012 Papaver somniferum HOM05D003931 ORTHO05D004577 7.9e-100 367.9 308 58.1
Cfa009708 Carpinus fangiana HOM05D003931 ORTHO05D004577 3.0e-99 365.9 219 74.4
Duzib213G0550 Durio zibethinus HOM05D003931 ORTHO05D004577 3.0e-99 365.9 288 60.4
Peaxi162Scf00450g00075 Petunia axillaris HOM05D003931 ORTHO05D004577 3.0e-99 365.9 219 74.9
Carub.0002s0286 Capsella rubella HOM05D003931 ORTHO05D004577 1.9e-98 363.2 269 61.7
Haze_23062 Corylus avellana HOM05D003931 ORTHO05D004577 2.5e-98 362.8 235 71.1
AT1G62190 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 3.3e-98 362.5 272 61.0
Thhalv10026787m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 3.3e-98 362.5 298 59.1
PSO541G1838 Papaver somniferum HOM05D003931 ORTHO05D004577 5.6e-98 361.7 309 57.3
Aa31LG5G10380 Aethionema arabicum HOM05D003931 ORTHO05D004577 3.7e-97 359.0 271 61.6
Prupe.4G210500 Prunus persica HOM05D003931 ORTHO05D004577 6.2e-97 358.2 210 78.1
CDE05G0277 Ceratophyllum demersum HOM05D003931 ORTHO05D007395 2.4e-96 356.3 232 68.5
Nitab4.5_0004336g0020 Nicotiana tabacum HOM05D003931 ORTHO05D004577 3.1e-96 355.9 252 65.9
BcaC06g32716 Brassica carinata HOM05D003931 ORTHO05D004577 5.3e-96 355.1 295 57.6
Rhsim06G0216100 Rhododendron simsii HOM05D003931 ORTHO05D004577 9.0e-96 354.4 199 81.4
ATR0752G116 Amborella trichopoda HOM05D003931 ORTHO05D004577 1.5e-95 353.6 234 68.4
AL4G12480 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 1.7e-94 350.1 291 58.8
C07p55050 Brassica napus HOM05D003931 ORTHO05D004577 2.9e-94 349.4 278 58.3
BolC7t46007H Brassica oleracea HOM05D003931 ORTHO05D004577 1.1e-93 347.4 278 57.6
Sp7g25000 Schrenkiella parvula HOM05D003931 ORTHO05D004577 1.1e-93 347.4 279 60.6
Atru.chr2.3340 Acer truncatum HOM05D003931 ORTHO05D004577 1.4e-93 347.1 233 68.2
BraA03t14771Z Brassica rapa HOM05D003931 ORTHO05D004577 1.9e-93 346.7 274 57.7
A03p57020 Brassica napus HOM05D003931 ORTHO05D004577 2.4e-93 346.3 284 56.0
Atru.chr2.3337 Acer truncatum HOM05D003931 ORTHO05D004577 7.1e-93 344.7 237 68.4
AT2G22890 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 7.1e-93 344.7 292 56.8
vmacro11734 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 9.3e-93 344.4 237 65.8
BcaB03g12523 Brassica carinata HOM05D003931 ORTHO05D004577 3.9e-91 339.0 294 58.5
Carub.0004s0202 Capsella rubella HOM05D003931 ORTHO05D004577 5.1e-91 338.6 219 66.2
Lsat_1_v5_gn_5_5140 Lactuca sativa HOM05D003931 ORTHO05D004577 6.7e-91 338.2 295 55.6
PGSC0003DMG400004435 Solanum tuberosum HOM05D003931 ORTHO05D004577 4.8e-89 332.0 240 63.8
Sc03g0008670 Simmondsia chinensis HOM05D003931 ORTHO05D004577 5.3e-88 328.6 301 55.1
BcaC07g38266 Brassica carinata HOM05D003931 ORTHO05D004577 9.0e-88 327.8 294 57.5
C08p10100 Brassica napus HOM05D003931 ORTHO05D004577 9.0e-88 327.8 294 57.5
BolC8t48689H Brassica oleracea HOM05D003931 ORTHO05D004577 9.0e-88 327.8 294 57.5
BcaC07g38264 Brassica carinata HOM05D003931 ORTHO05D004577 2.6e-87 326.2 294 57.5
BraA08t34015Z Brassica rapa HOM05D003931 ORTHO05D004577 3.4e-87 325.9 294 57.5
CSS0050113 Camellia sinensis var. sinensis HOM05D003931 ORTHO05D004577 2.9e-86 322.8 197 73.6
AUR62015741 Chenopodium quinoa HOM05D003931 ORTHO05D004577 3.8e-86 322.4 228 61.4
Lj6g0018599 Lotus japonicus HOM05D003931 ORTHO05D004577 8.4e-86 321.2 299 51.8
A08p20590 Brassica napus HOM05D003931 ORTHO05D004577 1.4e-85 320.5 294 56.8
CANSAT11G0562 Cannabis sativa HOM05D003931 ORTHO05D004577 1.5e-82 310.5 224 64.7
COL.COLO4_09644 Corchorus olitorius HOM05D003931 ORTHO05D004577 4.3e-82 308.9 284 55.6
FAN11G0561 Fragaria x ananassa HOM05D003931 ORTHO05D004577 5.7e-82 308.5 304 57.2
Oeu062594.1 Olea europaea HOM05D003931 ORTHO05D004577 1.8e-80 303.5 228 61.0
Cpa.g.sc97.27 Carica papaya HOM05D003931 ORTHO05D004577 4.1e-80 302.4 248 60.5
CANSAT11G1176 Cannabis sativa HOM05D003931 ORTHO05D004577 1.8e-75 287.0 221 59.7
BolC8t48691H Brassica oleracea HOM05D003931 ORTHO05D004577 3.7e-73 279.3 199 65.3
QL09p032903 Quercus lobata HOM05D003931 ORTHO05D004577 1.2e-71 274.2 158 77.2
SEGI_34207 Sequoiadendron giganteum HOM05D003931 ORTHO05D004577 1.5e-71 273.9 299 49.8
Eucgr.L01106 Eucalyptus grandis HOM05D003931 ORTHO05D004577 2.0e-71 273.5 288 53.5
Zm00001eb413170 Zea mays HOM05D003931 ORTHO05D004577 2.0e-71 273.5 299 47.8
Aqoxy1G03270 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 6.5e-70 268.5 232 55.6
Mapoly0034s0071 Marchantia polymorpha HOM05D003931 ORTHO05D004577 1.1e-69 267.7 229 53.7
Os08g0187900 Oryza sativa ssp. japonica HOM05D003931 ORTHO05D004577 6.1e-68 261.9 247 51.0
AagrBONN_evm.TU.Sc2ySwM_368.1941 Anthoceros agrestis HOM05D003931 ORTHO05D004577 3.7e-65 252.7 243 51.4
Migut.H01834 Erythranthe guttata HOM05D003931 ORTHO05D004577 6.3e-65 251.9 227 52.9
FvH4_3g22391 Fragaria vesca HOM05D003931 ORTHO05D004577 6.3e-65 251.9 298 49.3
SMO364G0503 Selaginella moellendorffii HOM05D003931 ORTHO05D004577 1.8e-64 250.4 230 53.0
SGA_v2.0_scaffold9G05067 Striga asiatica HOM05D003931 ORTHO05D004577 2.4e-64 250.0 238 50.0
Cfa009711 Carpinus fangiana HOM05D003931 ORTHO05D004577 3.5e-63 246.1 172 68.6
Pp3c13_12570 Physcomitrium patens HOM05D003931 ORTHO05D004577 2.9e-62 243.0 240 47.9
Migut.H01835 Erythranthe guttata HOM05D003931 ORTHO05D004577 1.9e-61 240.4 229 48.9
CDE05G0281 Ceratophyllum demersum HOM05D003931 ORTHO05D004577 1.2e-60 237.7 154 68.2
unitig_749.g13966 Utricularia gibba HOM05D003931 ORTHO05D004577 2.3e-59 233.4 226 48.2
Migut.H01836 Erythranthe guttata HOM05D003931 ORTHO05D004577 2.4e-56 223.4 223 47.5
SGA_v2.0_scaffold9G05070 Striga asiatica HOM05D003931 ORTHO05D004577 3.5e-55 219.5 241 44.4
Haze_23061 Corylus avellana HOM05D003931 ORTHO05D004577 5.9e-55 218.8 133 75.9
COL.COLO4_07219 Corchorus olitorius HOM05D003931 ORTHO05D004577 1.9e-53 213.8 130 71.5
Cre16.g673001 Chlamydomonas reinhardtii HOM05D003931 ORTHO05D004577 8.0e-52 208.4 227 46.7
MCO05G373 Micromonas commoda HOM05D003931 ORTHO05D004577 4.0e-51 206.1 191 50.8
Zm00001eb413200 Zea mays HOM05D003931 ORTHO05D004577 1.7e-49 200.7 229 45.4
PRCOL_00003954 Prasinoderma coloniale HOM05D003931 ORTHO05D004577 2.7e-47 193.4 220 42.3
ECA246G1165 Erigeron canadensis HOM05D003931 ORTHO05D004577 1.0e-46 191.4 152 57.9
CBR_g30523 Chara braunii HOM05D003931 ORTHO05D004577 1.5e-45 187.6 317 34.7
COL.COLO4_07218 Corchorus olitorius HOM05D003931 ORTHO05D004577 5.2e-43 179.1 109 70.6
AL3G48190 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 8.0e-36 155.2 96 66.7
C01p23190 Brassica napus HOM05D003931 ORTHO05D004577 1.8e-35 154.1 87 78.2
C08p10120 Brassica napus HOM05D003931 ORTHO05D004577 3.1e-27 126.7 92 62.0
BcaC06g32715 Brassica carinata HOM05D003931 ORTHO05D004577 5.4e-16 89.4 49 75.5
unitig_26.g9960 Utricularia gibba HOM05D003931 ORTHO05D004577 3.0e-14 83.6 74 50.0
BcaC09g50623 Brassica carinata HOM05D003931 ORTHO05D004577 1.6e-12 77.8 100 46.0
unitig_26.g9959 Utricularia gibba HOM05D001404 ORTHO05D026306 5.4e-08 62.8 43 65.1


User provided reference genes

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